+D Messenger RNA Biogenesis KO
#
Prokaryotic Defense System - Rhizobium johnstonii
%
!
ACRISPR-Cas system
B Universal Cas proteins
B Type I CRISPR-Cas system
C Type I signiture cas proteins
C Subtype I-A factors
C Subtype I-B factors
C Subtype I-C factors
C Subtype I-D factors
C Subtype I-E factors
C Subtype I-F factors
C Subtype I-U factors
B Type II CRISPR-Cas system
C Type II signiture cas proteins
C Subtype II-A factors
C Subtype II-B factors
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
C Subtype III-B factors
C Subtype III-U factors
#
ARestriction and modification system (R-M system)
B Type I R-M system
C pRL110101 hsdRp11; putative type I restriction-modification system HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C RL1100 hsdRch; putative type I restriction enzyme R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C RL1097 hsdSch; putative type I restriction enzyme specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C pRL110099 hsdSp11; putative type I restriction-modification system specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C pRL110098 hsdMp11; putative type I restriction enzyme K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C RL1099 hsdMch1; putative type I restriction enzyme modification methylase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
C RL1098 hsdMch2; putative type I restriction enzyme modification methylase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
B Type II R-M system
C Restriction endonucleases
C DNA methyltransferases
D RL1075 putative modification methylase K13581 ccrM; modification methylase [EC:2.1.1.72]
D pRL100027 putative restriction modification methylase K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D RL1932 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Type III R-M system
B Type IV R-M system
#
AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
C SymE-SymR
C Ldr-Rdl
C TisB-IstR
C Ibs-Sib
C ShoB-OhsC
C RalR-RalA
B Type II TA system
C MazF-MazE
C ChpB-ChpS
C YhaV-PrlF
C RelE/StbE-RelB/StbD
C YafQ-dinJ
D RL2523 putative DNA-damage-inducible protein K07473 dinJ; DNA-damage-inducible protein J
C YoeB-YefM
C HipA-HipB
D pRL110273 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D pRL110192 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D pRL110230 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
C HicA-HicB
C YafO-YafN
C Hha-TomB
C PspC-PspB
C CcdB-CcdA
C ParE-ParD
D pRL100321 conserved hypothetical protein K19092 parE1_3_4; toxin ParE1/3/4
D RL3203 putative DNA stabilisation protein K19092 parE1_3_4; toxin ParE1/3/4
D RL3202 conserved hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4
D pRL100012 conserved hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4
D pRL100322 conserved hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4
C Doc-Phd
D RL1611 doc; putative phage death on curing protein K07341 doc; death on curing protein
C HigB-HigA
C MqsR-MqsA
C VapC-VapB
D pRL120363 putative PIN domain signalling protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D pRL120364 putative virulence-associated protein homologue K18829 mvpT; antitoxin VapB
D pRL100005 conserved hypothetical PIN domain protein K19686 vapC; ribonuclease VapC [EC:3.1.-.-]
D pRL100006 conserved hypothetical protein K19687 vapB; antitoxin VapB
C PezT-PezA
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
D pRL120076 stbB; putative plasmid stability protein StbB K07062 fitB; toxin FitB [EC:3.1.-.-]
D pRL120133 stbB1; putative plasmid stability protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D RL1110 putative plasmid-stability like protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D RL0887 putative plasmid stability-like protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D pRL90095 putative plasmid stability protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D RL0432 putative plasmid stability protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D pRL120075 stbC; putative plasmid stability protein StbC K21495 fitA; antitoxin FitA
D pRL120134 stbC1; putative plasmid stability protein K21495 fitA; antitoxin FitA
C BC_0920-BC_0921
C Type II TA system related factors
D RL3071 ftsZ2; putative cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RL3298 ftsZ1; putative cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RL1609 parC; putative topoisomerase IV subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RL2515 gyrB2; putative DNA gyrase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RL4184 gltX; putative glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
D RL2385 conserved hypothetical protein K09159 cptB; antitoxin CptB
B Type V TA system
C GhoT-GhoS
#
ADNA phosphothiolation system
B Sulfur modification proteins
C RL2583 sufS2; putative cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
B DNA phosphorothioation-dependent restriction proteins
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023