+E Transcription factors KO #

  Transcription Factors - Rhizobium johnstonii

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D RL1932 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D RL3904 pobR; putative AraC family transcriptional regulator for P-hydroxybenzoate hydroxylase K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D pRL90287 putative AraC family transcriptional regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D pRL120257 melR; putative AraC family transcriptional regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D RL0301 putative AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D RL2634 putative AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D RL4182 putative AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D pRL110507 putative AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D RL1967 putative AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D RL4205 putative DNA repair methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RL0442 ada; putative ADA regulator (Methylated-DNA--protein-cysteine methyltransferase) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RL3709 putative AraC family transcriptional regulator K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA C LysR family D RL1186 putative LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D RL3573 putative LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D RL4588 putative LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D pRL110090 pcaQ; putative LysR family transcriptional regulator PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D pRL120361 oxyR; putative peroxide-inducible genes transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D RL2857 putative LysR family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D pRL100184 nodD; Nodulation protein D (LysR type regulator) K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator D pRL120275 putative LysR family transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D RL3158 putative HTH-type transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D pRL100430 putative LysR family transcriptional regulatory protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D pRL120410 putative LysR family transcriptional regulatory protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein C DeoR family D RL2743 putative transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D pRL120160 putative deoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D pRL120016 putative deoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D pRL90073 putative deoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D pRL120255 putative deoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor C LacI family D pRL120115 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D pRL110623 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RL2797 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RL2447 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RL3793 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RL1418 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RL4237 conserved hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RL4253 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RL4378 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D pRL120677 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D pRL90226 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RL0652 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RL0744 aglR; putative HTH LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RL4178 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D pRL120732 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D pRL90265 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D pRL120261 putative HTH-type transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RL3595 putative HTH-type transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D pRL100261 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D pRL100275 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RL4175 putative LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D pRL120189 putative transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D RL1252 putative GntR family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D RL1995 putative LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D pRL120618 putative LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D pRL100388 putative transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D RL0178 putative GntR family transcriptional regulator K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D pRL110208 putative GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D pRL110210 hutC; putative histidine utilization transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D RL3361 putative GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D RL4604 putative GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D RL3849 putative GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D pRL90107 putative GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RL4574 putative GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RL2337 putative GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D pRL110362 putative GntR family transcription regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D RL3248 putative GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D pRL90257 putative GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator D pRL100241 gstR; putative GntR family transcriptional regulator K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator C TetR/AcrR family D RL1272 putative TetR family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D RL3715 putative TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D pRL80046 putative TetR family transcriptional regulatory protein K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D RL1228 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RL4303 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D RL3873 rmeR; putative TetR family transcriptional regulator K18905 ameR; TetR/AcrR family transcriptional regulator, repressor of the ameABC operon D RL3679 putative TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D RL0344 putative AsnC family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D pRL120552 putative AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RL0194 putative AsnC transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RL1965 aldR; AscN family transcriptional regulator of aldA K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D pRL120045 putative AsnC family transcriptional regulatory protein K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes D RL2776 putative AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D RL2986 putative AsnC family transcriptional regulator K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon C LuxR family D pRL100172 rhiR; Putative transcriptional regulatory protein K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D RL4639 expR; LuxR-family regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D pRL90180 putative LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D pRL80131 traRp8; putative LuxR-type transcriptional regulator protein TraR K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids D RL3377 bisR; putative AHL-dependent transcriptional regulator K20252 cinR; LuxR family transcriptional regulator, quorum-sensing system regulator CinR C MarR family D RL0159 putative MarR family transcriptional regulator protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D RL3552 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RL3196 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RL2924 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RL1301A putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D pRL120291 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D pRL110330 hmrR2; putative MerR family heavy metal dependent transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D pRL110009 hmrR1; putative MerR family copper export transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D RL4397 putative transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D RL0397 mur; manganese responsive transcriptional regulator member of Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RL3175 zur; putative zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D RL0115 irrA; iron response regulator K09826 irr; Fur family transcriptional regulator, iron response regulator D pRL110146 irrB; putative FUR family transcriptional regulator K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family D pRL110286 putative IclR transcriptional regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D pRL100133 putative IclR family transcriptional regulatory protein K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor C CRP/FNR family D RL2818 fnrN; putative FNR family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D pRL90019 fixK; putative FNR/CRP transcriptional regulator FixK K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D pRL90025 putative FNR/CRP family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D RL0777 rirA; Rhizobium iron regulator K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator C ArsR family C XRE family D RL0762 putative HTH transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family D RL3102 putative PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator C Other families D RL1715 birA; putative biotin transcriptional regulator bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D pRL100196 nifA; nifA transcriptional regulator K02584 nifA; Nif-specific regulatory protein D RL4688 mopB; putative molybdenum-pterin binding protein K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family C Other families D pRL120554 putA; delta-1-pyrroline-5-carboxylate dehydrogenase(p5c dehydrogenase)] K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D RL4735 parB; putative chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D pRL70007 putative plasmid stabilisation protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D pRL90002 repBp9; putative replication protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D pRL80002 repBp8; replication protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D pRL100002 repBp10; putative RepB replication protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D pRL110002 repBp11; putative replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RL4615 putative CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D RL1379 rosR; putative nodulation competitiveness transcriptional regulator K25884 mucR; MucR family transcriptional regulator, transcriptional regulator of exopolysaccharide biosynthesis D RL0381 hrcA; putative heat-inducible transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor D RL0255 putative transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D pRL90219 putative TenA family transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D RL1035 conserved hypothetical protein K07735 algH; putative transcriptional regulator D RL2643 dksA; putative dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D RL3316 mraZ; conserved hypothetical protein MraZ K03925 mraZ; transcriptional regulator MraZ D RL2037 exoR; exopolysaccharide production negative regulator K25885 exoR; exopolysaccharide production negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0