+E Transcription factors KO
#
Transcription Factors - Rhizobium johnstonii
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D RL1932 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D RL3904 pobR; putative AraC family transcriptional regulator for P-hydroxybenzoate hydroxylase K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D pRL90287 putative AraC family transcriptional regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D pRL120257 melR; putative AraC family transcriptional regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D RL0301 putative AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D RL2634 putative AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D RL4182 putative AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D pRL110507 putative AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D RL1967 putative AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D RL4205 putative DNA repair methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RL0442 ada; putative ADA regulator (Methylated-DNA--protein-cysteine methyltransferase) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RL3709 putative AraC family transcriptional regulator K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
C LysR family
D RL1186 putative LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RL3573 putative LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D RL4588 putative LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D pRL110090 pcaQ; putative LysR family transcriptional regulator PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D pRL120361 oxyR; putative peroxide-inducible genes transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D RL2857 putative LysR family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D pRL100184 nodD; Nodulation protein D (LysR type regulator) K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator
D pRL120275 putative LysR family transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D RL3158 putative HTH-type transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D pRL100430 putative LysR family transcriptional regulatory protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D pRL120410 putative LysR family transcriptional regulatory protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
C DeoR family
D RL2743 putative transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D pRL120160 putative deoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D pRL120016 putative deoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D pRL90073 putative deoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D pRL120255 putative deoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D pRL120115 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D pRL110623 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RL2797 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RL2447 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RL3793 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RL1418 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RL4237 conserved hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RL4253 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RL4378 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D pRL120677 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D pRL90226 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RL0652 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RL0744 aglR; putative HTH LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RL4178 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D pRL120732 putative LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D pRL90265 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D pRL120261 putative HTH-type transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RL3595 putative HTH-type transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D pRL100261 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D pRL100275 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RL4175 putative LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D pRL120189 putative transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D RL1252 putative GntR family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D RL1995 putative LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D pRL120618 putative LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D pRL100388 putative transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D RL0178 putative GntR family transcriptional regulator K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D pRL110208 putative GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D pRL110210 hutC; putative histidine utilization transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D RL3361 putative GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D RL4604 putative GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D RL3849 putative GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D pRL90107 putative GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RL4574 putative GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RL2337 putative GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D pRL110362 putative GntR family transcription regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D RL3248 putative GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D pRL90257 putative GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
D pRL100241 gstR; putative GntR family transcriptional regulator K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator
C TetR/AcrR family
D RL1272 putative TetR family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D RL3715 putative TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D pRL80046 putative TetR family transcriptional regulatory protein K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D RL1228 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RL4303 putative TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D RL3873 rmeR; putative TetR family transcriptional regulator K18905 ameR; TetR/AcrR family transcriptional regulator, repressor of the ameABC operon
D RL3679 putative TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D RL0344 putative AsnC family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D pRL120552 putative AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RL0194 putative AsnC transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RL1965 aldR; AscN family transcriptional regulator of aldA K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D pRL120045 putative AsnC family transcriptional regulatory protein K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes
D RL2776 putative AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D RL2986 putative AsnC family transcriptional regulator K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D pRL100172 rhiR; Putative transcriptional regulatory protein K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
D RL4639 expR; LuxR-family regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D pRL90180 putative LuxR family transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D pRL80131 traRp8; putative LuxR-type transcriptional regulator protein TraR K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids
D RL3377 bisR; putative AHL-dependent transcriptional regulator K20252 cinR; LuxR family transcriptional regulator, quorum-sensing system regulator CinR
C MarR family
D RL0159 putative MarR family transcriptional regulator protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D RL3552 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RL3196 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RL2924 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D RL1301A putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D pRL120291 putative MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D pRL110330 hmrR2; putative MerR family heavy metal dependent transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D pRL110009 hmrR1; putative MerR family copper export transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D RL4397 putative transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D RL0397 mur; manganese responsive transcriptional regulator member of Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RL3175 zur; putative zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D RL0115 irrA; iron response regulator K09826 irr; Fur family transcriptional regulator, iron response regulator
D pRL110146 irrB; putative FUR family transcriptional regulator K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D pRL110286 putative IclR transcriptional regulatory protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D pRL100133 putative IclR family transcriptional regulatory protein K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor
C CRP/FNR family
D RL2818 fnrN; putative FNR family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D pRL90019 fixK; putative FNR/CRP transcriptional regulator FixK K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D pRL90025 putative FNR/CRP family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D RL0777 rirA; Rhizobium iron regulator K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator
C ArsR family
C XRE family
D RL0762 putative HTH transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
D RL3102 putative PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D RL1715 birA; putative biotin transcriptional regulator bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D pRL100196 nifA; nifA transcriptional regulator K02584 nifA; Nif-specific regulatory protein
D RL4688 mopB; putative molybdenum-pterin binding protein K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D pRL120554 putA; delta-1-pyrroline-5-carboxylate dehydrogenase(p5c dehydrogenase)] K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D RL4735 parB; putative chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D pRL70007 putative plasmid stabilisation protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D pRL90002 repBp9; putative replication protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D pRL80002 repBp8; replication protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D pRL100002 repBp10; putative RepB replication protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D pRL110002 repBp11; putative replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RL4615 putative CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D RL1379 rosR; putative nodulation competitiveness transcriptional regulator K25884 mucR; MucR family transcriptional regulator, transcriptional regulator of exopolysaccharide biosynthesis
D RL0381 hrcA; putative heat-inducible transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D RL0255 putative transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D pRL90219 putative TenA family transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RL1035 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D RL2643 dksA; putative dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RL3316 mraZ; conserved hypothetical protein MraZ K03925 mraZ; transcriptional regulator MraZ
D RL2037 exoR; exopolysaccharide production negative regulator K25885 exoR; exopolysaccharide production negative regulator
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0