+F Repair protein KO #

  DNA Repair and Recombination Proteins - Rhizobium johnstonii

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D RL0293 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RL1985 phr; putative deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E RL3673 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RL3782 putative methylpurine-DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E RL1078 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RL4207 putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D RL4294 putative NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RL2595 putative MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RL0346 dut; putative deoxyuridine 5'triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D RL0293 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RL4205 putative DNA repair methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RL0442 ada; putative ADA regulator (Methylated-DNA--protein-cysteine methyltransferase) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RL1985 phr; putative deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D RL0039 putative alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E RL3673 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E pRL110472 putative G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E RL3420 putative helicase/glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RL1451 putative uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E pRL110312 putative uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RL4312 putative DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E RL3782 putative methylpurine-DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E RL1078 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RL0871 tag; putative DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E RL0372 mutM; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E RL4207 putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E RL1832 exoA; putative exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RL2038 xthA; putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RL4561 xthA; putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E RL2099 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E RL3293 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E RL0160 polA; putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E RL2398 uvrA; putative UvrABC system protein A (UvrA protein) K03701 uvrA; excinuclease ABC subunit A E RL2957 uvrB; putative UVRABC system protein B (UvrB protein) (excinuclease ABC subunit B) K03702 uvrB; excinuclease ABC subunit B E RL1587 uvrC; putative uvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E RL3276 pcrA; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RL0607 uvrD; putative uvrD ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RL0160 polA; putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E RL3293 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F RL1766 rpoB; putative DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F RL1767 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F RL1798 rpoA; putative DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F RL1505 putative polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F RL2386 mfd; putative transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E RL0406 mutS; putative DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E RL0910 mutL; putative DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E RL0282 xseA; putative exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E RL0976 xseB; putative exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E pRL110524 putative exonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E RL4697 dnaE1; putative DNA polymerase I alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E RL1723 dnaE3; putative DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E RL0334 dnaN; putative DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E RL1572 putative DNA polymerase III subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E RL4734 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E RL2475 holB; putative DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E RL3291 putative DNA polymerase/exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RL0005 putative DNA polymerase subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E pRL110533 putative exonuclease/polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RL0134 dnaX; putative DNA polymerase III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E RL3293 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E RL3276 pcrA; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RL0607 uvrD; putative uvrD ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RL2399 ssb; putative single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E RL2637 recA; putative recombinase K03553 recA; recombination protein RecA E RL3989 ruvA; putative Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E RL3990 ruvB; putative Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RL3986 ruvC; putative crossover Holliday junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E RL4412 priA; putative primosomal protein N' (replication factor y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E RL2637 recA; putative recombinase K03553 recA; recombination protein RecA E RL1548 radA; putative DNA repair protein RadA homolog K04485 radA; DNA repair protein RadA/Sms E RL0148 recF; putative DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF E RL2384 recG; putative ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E RL2099 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E RL1515 recO; putative DNA repair protein (recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E RL0131A recR; putative recombination protein K06187 recR; recombination protein RecR E RL3295 recN; putative DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E RL3989 ruvA; putative Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E RL3990 ruvB; putative Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RL3986 ruvC; putative crossover Holliday junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E RL0026 putative ATP-dependent UvrD family DNA helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E RL0027 conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E RL1311 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E RL2141 conserved hypothetical exported protein K10979 ku; DNA end-binding protein Ku E RL2142 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku E pRL110108 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku E pRL110107 conserved hypothetical exported protein K10979 ku; DNA end-binding protein Ku E RL0832 putative DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E pRL110115 putative DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E pRL120212 putative DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E pRL120229 putative DNA ligase family protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F RL2401 gyrA; putative DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F RL0012 gyrB1; putative DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F RL1735 topA; putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F pRL110305 putative topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F RL1691 hupA; putative DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F pRL70019 hupA2; putative DNA-binding protein Hu-alpha K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F RL2099 recJ; putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F RL1515 recO; putative DNA repair protein (recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F RL0131A recR; putative recombination protein K06187 recR; recombination protein RecR F RL3293 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F RL1640 ihfA; putative integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha F RL0417 ihfB; putative integration host factor beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F RL3407 recQ; putative ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RL2398 uvrA; putative UvrABC system protein A (UvrA protein) K03701 uvrA; excinuclease ABC subunit A F RL2957 uvrB; putative UVRABC system protein B (UvrB protein) (excinuclease ABC subunit B) K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D RL1725 putative DinB DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D pRL100039 putative DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D RL2637 recA; putative recombinase K03553 recA; recombination protein RecA D RL2236 lexA; putative LexA repressor (SOS regulatory protein) K01356 lexA; repressor LexA [EC:3.4.21.88] D RL3295 recN; putative DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D RL2115 conserved hypothetical protein K14160 imuA; protein ImuA D pRL100042 conserved hypothetical protein K14160 imuA; protein ImuA D RL4699 conserved hypothetical protein K14160 imuA; protein ImuA D pRL80057 conserved hypothetical protein K14161 imuB; protein ImuB D RL4698 conserved hypothetical protein K14161 imuB; protein ImuB D RL2116 conserved hypothetical protein K14161 imuB; protein ImuB D RL2117 dnaE2; putative DNA polymerase II subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D RL2399 ssb; putative single-strand binding protein (ssb) K03111 ssb; single-strand DNA-binding protein D RL0260 Putative transcriptional regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D RL0582 putative ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D RL4294 putative NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RL2595 putative MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RL0346 dut; putative deoxyuridine 5'triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RL1945 putative vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RL4259 nrdE; putative ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RL4258 nrdF; putative ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024