+D GENES KO #

  KEGG Orthology (KO) - Rhodococcus qingshengii

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:rqi00010] D C1M55_05450 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_17630 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_04710 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_22340 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D C1M55_12465 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D C1M55_20915 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D C1M55_07165 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D C1M55_15105 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D C1M55_15095 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D C1M55_15100 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D C1M55_08205 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D C1M55_00350 histidine phosphatase family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D C1M55_11805 nucleotide pyrophosphatase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D C1M55_21535 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D C1M55_16655 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D C1M55_00310 pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D C1M55_18085 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D C1M55_23125 diaminohydroxyphosphoribosylaminopyrimidine deaminase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D C1M55_17810 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D C1M55_25440 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_07790 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_23120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_30485 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_20815 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D C1M55_18125 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D C1M55_12475 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D C1M55_29005 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D C1M55_07990 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_09155 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D C1M55_02775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_12980 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_29340 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_23215 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D C1M55_18220 hydrolase K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10] D C1M55_11860 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D C1M55_14200 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D C1M55_05380 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D C1M55_19670 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] C 00020 Citrate cycle (TCA cycle) [PATH:rqi00020] D C1M55_25465 2-methylcitrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D C1M55_23210 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D C1M55_23230 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D C1M55_15295 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D C1M55_10125 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D C1M55_25415 2-oxo acid dehydrogenase subunit E2 K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D C1M55_20345 kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61] D C1M55_25440 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_07790 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_23120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_30485 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_22305 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D C1M55_22310 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D C1M55_28550 propionyl-CoA--succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D C1M55_10310 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D C1M55_27885 sdhA; FAD-binding protein K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D C1M55_10305 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D C1M55_27890 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D C1M55_10320 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D C1M55_27880 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D C1M55_10315 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit D C1M55_20780 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D C1M55_20920 aspA; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D C1M55_14635 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D C1M55_13185 malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D C1M55_26710 mqo; malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D C1M55_12655 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D C1M55_05380 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D C1M55_00310 pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D C1M55_18085 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D C1M55_23125 diaminohydroxyphosphoribosylaminopyrimidine deaminase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D C1M55_17810 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:rqi00030] D C1M55_22340 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D C1M55_15170 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D C1M55_15160 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D C1M55_00015 gnd; 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D C1M55_15470 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D C1M55_15045 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D C1M55_15180 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D C1M55_15175 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D C1M55_18835 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D C1M55_19490 phosphoketolase family protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22] D C1M55_08075 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D C1M55_18645 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D C1M55_11860 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D C1M55_21705 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D C1M55_30530 hypothetical protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D C1M55_01480 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12] D C1M55_26795 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12] D C1M55_07165 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D C1M55_20915 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D C1M55_12465 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:rqi00040] D C1M55_06655 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D C1M55_06715 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D C1M55_06730 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D C1M55_06585 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D C1M55_22115 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D C1M55_15045 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D C1M55_22535 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D C1M55_18180 NAD(P)-dependent alcohol dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D C1M55_28050 aldehyde dehydrogenase K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-] D C1M55_22410 aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:rqi00051] D C1M55_06580 beta-mannosidase K19355 MAN; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D C1M55_18150 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D C1M55_10980 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D C1M55_10455 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D C1M55_10970 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D C1M55_10930 GDP-mannose pyrophosphorylase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D C1M55_06645 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D C1M55_06705 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D C1M55_21615 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D C1M55_06650 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D C1M55_06710 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D C1M55_21620 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D C1M55_22410 aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D C1M55_23600 SDR family NAD(P)-dependent oxidoreductase K21883 lra5; 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) [EC:1.1.1.401] D C1M55_12465 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D C1M55_20915 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D C1M55_13990 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D C1M55_18180 NAD(P)-dependent alcohol dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D C1M55_18185 mannitol dehydrogenase family protein K00045 E1.1.1.67; mannitol 2-dehydrogenase [EC:1.1.1.67] D C1M55_07165 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D C1M55_15105 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D C1M55_28680 DAK2 domain-containing protein K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15] D C1M55_18835 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D C1M55_13985 PTS lactose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] C 00052 Galactose metabolism [PATH:rqi00052] D C1M55_23215 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D C1M55_27930 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D C1M55_27925 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D C1M55_14120 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_08285 NAD-dependent dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_15555 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_16415 epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_01260 epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_06585 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D C1M55_22115 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D C1M55_11860 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D C1M55_05450 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_17630 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_04710 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_01080 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D C1M55_12465 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D C1M55_18885 DUF3459 domain-containing protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:rqi00053] D C1M55_06655 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D C1M55_06715 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D C1M55_06730 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D C1M55_30530 hypothetical protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00500 Starch and sucrose metabolism [PATH:rqi00500] D C1M55_18885 DUF3459 domain-containing protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D C1M55_06585 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D C1M55_22115 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D C1M55_18785 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D C1M55_14415 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D C1M55_17010 glycoside hydrolase family 1 protein K05350 bglB; beta-glucosidase [EC:3.2.1.21] D C1M55_20535 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D C1M55_12370 glycosyltransferase family 1 protein K16150 K16150; glycogen synthase [EC:2.4.1.11] D C1M55_19290 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D C1M55_12375 DUF1957 domain-containing protein K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D C1M55_19280 DUF3417 domain-containing protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D C1M55_19285 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16] D C1M55_20540 glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D C1M55_19670 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D C1M55_12325 glgX; glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D C1M55_17260 glgX; glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D C1M55_17265 treY; malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15] D C1M55_17350 treZ; malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] D C1M55_06485 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D C1M55_04810 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D C1M55_14650 otsB; trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] D C1M55_18530 glycoside hydrolase family 15 protein K22934 E3.2.1.28; alpha,alpha-trehalase [EC:3.2.1.28] D C1M55_11860 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D C1M55_05450 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_17630 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_04710 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_22340 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D C1M55_18150 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rqi00520] D C1M55_05510 beta-glucosidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D C1M55_19670 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D C1M55_19660 PTS N-acetylglucosamine transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D C1M55_04725 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D C1M55_19645 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D C1M55_06075 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D C1M55_04730 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D C1M55_19640 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D C1M55_18150 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D C1M55_09620 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D C1M55_09595 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D C1M55_21700 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D C1M55_06070 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D C1M55_06060 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D C1M55_19360 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D C1M55_08115 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D C1M55_04715 putative N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D C1M55_23630 gfo/Idh/MocA family oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D C1M55_05450 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_17630 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_04710 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_14200 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63] D C1M55_11860 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D C1M55_06585 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D C1M55_22115 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D C1M55_06655 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D C1M55_06715 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D C1M55_06730 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D C1M55_27930 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D C1M55_27925 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D C1M55_14120 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_08285 NAD-dependent dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_15555 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_16415 epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_01260 epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_01080 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D C1M55_22340 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D C1M55_10980 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D C1M55_10455 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D C1M55_10970 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D C1M55_10930 GDP-mannose pyrophosphorylase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D C1M55_06645 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D C1M55_06705 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D C1M55_21615 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D C1M55_06650 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D C1M55_06710 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D C1M55_21620 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D C1M55_02250 DegT/DnrJ/EryC1/StrS aminotransferase family protein K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D C1M55_20535 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:rqi00620] D C1M55_02775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_12980 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_29340 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_00310 pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D C1M55_18085 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D C1M55_23125 diaminohydroxyphosphoribosylaminopyrimidine deaminase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D C1M55_17810 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D C1M55_25440 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_07790 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_23120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_30485 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_04080 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D C1M55_29420 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D C1M55_12475 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D C1M55_29005 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D C1M55_18125 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D C1M55_07990 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D C1M55_07470 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D C1M55_07465 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D C1M55_16655 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D C1M55_11125 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D C1M55_10790 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D C1M55_06175 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D C1M55_18110 propionyl-CoA carboxylase subunit beta K18472 accD6; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15] D C1M55_12705 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_09155 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D C1M55_28550 propionyl-CoA--succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D C1M55_20815 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D C1M55_17370 pyruvate oxidase K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D C1M55_01325 alpha-hydroxy-acid oxidizing enzyme K00467 E1.13.12.4; lactate 2-monooxygenase [EC:1.13.12.4] D C1M55_14620 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D C1M55_06285 MBL fold metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D C1M55_20395 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D C1M55_12655 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D C1M55_14635 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D C1M55_13185 malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D C1M55_26710 mqo; malate dehydrogenase (quinone) K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4] D C1M55_20780 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D C1M55_20920 aspA; class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D C1M55_15120 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D C1M55_05380 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D C1M55_16050 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D C1M55_25770 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26145 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_01065 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_06015 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02155 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04430 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04600 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04625 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_05530 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26675 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_27635 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22640 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_19310 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21060 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21905 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22635 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_28955 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02310 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D C1M55_05290 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rqi00630] D C1M55_07975 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D C1M55_02775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_12980 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_29340 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_16050 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D C1M55_14635 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D C1M55_25465 2-methylcitrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D C1M55_23210 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D C1M55_23230 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D C1M55_15295 acnA; aconitate hydratase AcnA K01681 ACO; aconitate hydratase [EC:4.2.1.3] D C1M55_25770 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26145 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_01065 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_06015 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02155 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04430 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04600 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04625 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_05530 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26675 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_27635 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22640 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_19310 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21060 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21905 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22635 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_28955 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_19315 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D C1M55_10790 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D C1M55_06175 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D C1M55_10840 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15] D C1M55_18110 propionyl-CoA carboxylase subunit beta K18472 accD6; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15] D C1M55_15400 mutA; methylmalonyl-CoA mutase small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D C1M55_15405 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D C1M55_25910 FAD-binding oxidoreductase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D C1M55_00120 FAD-binding oxidoreductase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D C1M55_14080 FAD-binding oxidoreductase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D C1M55_20235 FAD-binding protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D C1M55_02435 catalase K03781 katE; catalase [EC:1.11.1.6] D C1M55_29390 catalase HPII K03781 katE; catalase [EC:1.11.1.6] D C1M55_18035 haloacid dehalogenase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D C1M55_25810 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_17840 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_17965 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_19045 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_30570 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_19425 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D C1M55_20975 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D C1M55_16065 gcvP; glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D C1M55_17795 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D C1M55_25440 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_07790 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_23120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_30485 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_16090 gcvH; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D C1M55_10250 hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22] D C1M55_17755 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D C1M55_20345 kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61] D C1M55_17940 cupin domain-containing protein K01569 oxdD; oxalate decarboxylase [EC:4.1.1.2] D C1M55_27555 kynB; arylformamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D C1M55_08070 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D C1M55_07955 acetamidase/formamidase family protein K01455 E3.5.1.49; formamidase [EC:3.5.1.49] C 00640 Propanoate metabolism [PATH:rqi00640] D C1M55_02775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_12980 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_29340 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_07470 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D C1M55_07465 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D C1M55_30500 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D C1M55_19770 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D C1M55_19775 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D C1M55_30495 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D C1M55_19780 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D C1M55_30490 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D C1M55_25440 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_07790 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_23120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_30485 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_08415 acyl-CoA oxidase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D C1M55_26115 oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D C1M55_19610 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_12340 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_02160 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D C1M55_11125 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D C1M55_10790 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D C1M55_06175 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D C1M55_18110 propionyl-CoA carboxylase subunit beta K18472 accD6; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15] D C1M55_03290 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_28045 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_10840 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15] D C1M55_19315 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D C1M55_15400 mutA; methylmalonyl-CoA mutase small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D C1M55_15405 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D C1M55_22310 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D C1M55_22305 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D C1M55_10170 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D C1M55_19630 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D C1M55_25475 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D C1M55_25470 prpB; methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D C1M55_20815 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] C 00650 Butanoate metabolism [PATH:rqi00650] D C1M55_25770 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26145 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_01065 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_06015 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02155 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04430 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04600 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04625 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_05530 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26675 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_27635 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22640 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_19310 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21060 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21905 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22635 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_28955 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_25285 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D C1M55_07980 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D C1M55_27985 3-hydroxyacyl-CoA dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D C1M55_28915 3-hydroxybutyryl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D C1M55_02160 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D C1M55_19610 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_12340 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_20290 enoyl-CoA hydratase/isomerase family protein K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_04080 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D C1M55_29420 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D C1M55_24795 alpha/beta hydrolase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D C1M55_10595 CoA transferase subunit A K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D C1M55_10590 3-oxoadipate--succinyl-CoA transferase subunit B K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D C1M55_10310 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D C1M55_27885 sdhA; FAD-binding protein K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D C1M55_10305 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D C1M55_27890 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D C1M55_10320 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D C1M55_27880 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D C1M55_10315 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit D C1M55_17420 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D C1M55_03290 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_28045 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_26345 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_00485 succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_03295 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_22335 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_28550 propionyl-CoA--succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D C1M55_02380 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D C1M55_17225 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D C1M55_06025 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D C1M55_09285 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D C1M55_26645 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D C1M55_06020 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D C1M55_09290 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D C1M55_26640 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D C1M55_10640 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D C1M55_03965 1,4-butanediol diacrylate esterase K18372 acmB; methyl acetate hydrolase [EC:3.1.1.114] D C1M55_26310 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D C1M55_12505 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D C1M55_12510 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D C1M55_19945 2,3-butanediol dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303] D C1M55_23380 alcohol dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303] D C1M55_25610 SDR family NAD(P)-dependent oxidoreductase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] D C1M55_03670 KR domain-containing protein K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] D C1M55_04090 SDR family NAD(P)-dependent oxidoreductase K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] C 00660 C5-Branched dibasic acid metabolism [PATH:rqi00660] D C1M55_26310 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D C1M55_12505 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D C1M55_12510 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D C1M55_26265 CoA transferase K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22] D C1M55_22310 ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D C1M55_22305 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D C1M55_01530 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D C1M55_12570 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D C1M55_12575 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D C1M55_12525 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D C1M55_16570 isocitrate/isopropylmalate dehydrogenase family protein K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:rqi00562] D C1M55_29055 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D C1M55_14205 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D C1M55_16960 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D C1M55_29945 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D C1M55_10180 inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D C1M55_10255 dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D C1M55_10290 dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D C1M55_04700 gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D C1M55_10185 2-keto-myo-inositol dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44] D C1M55_10285 inosose dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44] D C1M55_10190 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D C1M55_10195 iolB; 5-deoxy-glucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D C1M55_10205 iolC; 5-dehydro-2-deoxygluconokinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D C1M55_10170 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D C1M55_19630 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D C1M55_15105 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:rqi00190] D C1M55_13775 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D C1M55_13770 NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D C1M55_13765 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D C1M55_13760 NADH-quinone oxidoreductase subunit NuoD K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D C1M55_13755 NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D C1M55_13750 NADH oxidoreductase (quinone) subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D C1M55_13745 NADH-quinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D C1M55_13740 NADH-quinone oxidoreductase subunit NuoH K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D C1M55_13735 NADH-quinone oxidoreductase subunit NuoI K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D C1M55_13730 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D C1M55_13725 NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D C1M55_13720 NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D C1M55_13715 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D C1M55_13710 NADH-quinone oxidoreductase subunit NuoN K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D C1M55_15520 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D C1M55_22375 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D C1M55_28460 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D C1M55_12170 oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D C1M55_10310 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D C1M55_27885 sdhA; FAD-binding protein K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D C1M55_10305 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D C1M55_27890 succinate dehydrogenase/fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D C1M55_10320 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D C1M55_27880 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit D C1M55_10315 succinate dehydrogenase K00242 sdhD; succinate dehydrogenase membrane anchor subunit D C1M55_17710 menaquinol-cytochrome C reductase K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D C1M55_17715 cytochrome bc complex cytochrome b subunit K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8] D C1M55_17705 cytochrome C K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8] D C1M55_15185 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D C1M55_17730 cytochrome c oxidase subunit 4 K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9] D C1M55_17700 heme-copper oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D C1M55_06120 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D C1M55_12305 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D C1M55_22905 ctaD; cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D C1M55_17735 cytochrome C oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D C1M55_15200 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D C1M55_24550 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D C1M55_24545 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D C1M55_19390 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D C1M55_19380 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D C1M55_19385 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D C1M55_19395 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D C1M55_19375 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D C1M55_19410 atpB; ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D C1M55_19400 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D C1M55_19405 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D C1M55_03450 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D C1M55_17910 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D C1M55_12590 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D C1M55_07760 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D C1M55_23080 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:rqi00680] D C1M55_29780 aldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D C1M55_08995 mdo; NDMA-dependent methanol dehydrogenase K17067 mdo; formaldehyde dismutase / methanol dehydrogenase [EC:1.2.98.1 1.1.99.37] D C1M55_18125 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D C1M55_19425 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D C1M55_20975 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D C1M55_21535 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D C1M55_15120 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D C1M55_14635 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D C1M55_28680 DAK2 domain-containing protein K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15] D C1M55_07165 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D C1M55_20915 glpX; fructose-bisphosphatase class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D C1M55_12465 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D C1M55_27045 amine dehydrogenase K15228 mauA; methylamine dehydrogenase light chain [EC:1.4.9.1] D C1M55_07470 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D C1M55_07465 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D C1M55_02775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_12980 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_29340 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_08205 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D C1M55_00350 histidine phosphatase family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D C1M55_11805 nucleotide pyrophosphatase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D C1M55_12520 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D C1M55_23235 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D C1M55_12310 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D C1M55_28860 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] D C1M55_20650 fbiC; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase K11779 fbiC; FO synthase [EC:2.5.1.147 4.3.1.32] D C1M55_12595 cofC; 2-phospho-L-lactate guanylyltransferase K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105] D C1M55_10950 2-phospho-L-lactate transferase K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] D C1M55_10945 coenzyme F420-0:L-glutamate ligase K24998 fbiB; dehydro coenzyme F420 reductase / coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:1.3.8.17 6.3.2.31 6.3.2.34] C 00910 Nitrogen metabolism [PATH:rqi00910] D C1M55_07955 acetamidase/formamidase family protein K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D C1M55_11215 NarK/NasA family nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D C1M55_11220 nitrite reductase large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15] D C1M55_11225 nirD; nitrite reductase (NAD(P)H) small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15] D C1M55_26205 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D C1M55_18540 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D C1M55_29585 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D C1M55_25875 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D C1M55_03280 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D C1M55_18900 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D C1M55_19055 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D C1M55_25810 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_17840 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_17965 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_19045 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_30570 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_00265 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D C1M55_16665 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D C1M55_28925 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D C1M55_00270 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D C1M55_16660 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D C1M55_11430 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D C1M55_03780 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D C1M55_23070 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:rqi00920] D C1M55_18520 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D C1M55_18515 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D C1M55_18510 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D C1M55_18505 sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D C1M55_24765 aliphatic sulfonate ABC transporter substrate-binding protein K15551 tauA; taurine transport system substrate-binding protein D C1M55_24770 ABC transporter permease K15552 tauC; taurine transport system permease protein D C1M55_24760 ABC transporter ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D C1M55_22680 taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D C1M55_29990 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D C1M55_30025 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D C1M55_29995 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D C1M55_30000 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D C1M55_26905 LLM class flavin-dependent oxidoreductase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D C1M55_17915 LLM class flavin-dependent oxidoreductase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D C1M55_30010 LLM class flavin-dependent oxidoreductase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D C1M55_30015 LLM class flavin-dependent oxidoreductase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D C1M55_24825 msuE; FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D C1M55_00660 cysC; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D C1M55_08370 sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D C1M55_19540 cysC; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D C1M55_18485 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D C1M55_00665 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_08365 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_18480 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_19545 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_08360 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D C1M55_19535 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D C1M55_13340 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D C1M55_18475 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D C1M55_28930 sulfite reductase subunit alpha K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D C1M55_10065 reductase K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D C1M55_18470 nitrite/sulfite reductase K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1] D C1M55_06170 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_10805 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_24515 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_17925 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_19740 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_05390 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D C1M55_05385 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D C1M55_08475 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D C1M55_10115 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D C1M55_21045 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D C1M55_07325 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D C1M55_27795 sfnG; dimethyl sulfone monooxygenase SfnG K17228 sfnG; dimethylsulfone monooxygenase [EC:1.14.14.35] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:rqi00061] D C1M55_11125 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D C1M55_10790 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D C1M55_06175 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D C1M55_18110 propionyl-CoA carboxylase subunit beta K18472 accD6; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15] D C1M55_18100 acyl carrier protein K02078 acpP; acyl carrier protein D C1M55_18095 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D C1M55_19195 type I polyketide synthase K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-] D C1M55_26270 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_04420 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_05525 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_27485 KR domain-containing protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_27655 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_24665 KR domain-containing protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_18330 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_18960 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_25060 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_26415 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_24010 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_28485 KR domain-containing protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_24415 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D C1M55_26200 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_00450 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_00645 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_02120 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_27720 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_17655 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_19970 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_20225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_27695 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_28425 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_20285 CoA synthetase C 00062 Fatty acid elongation [PATH:rqi00062] D C1M55_28915 3-hydroxybutyryl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] C 00071 Fatty acid degradation [PATH:rqi00071] D C1M55_25770 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26145 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_01065 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_06015 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02155 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04430 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04600 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04625 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_05530 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26675 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_27635 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22640 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_19310 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21060 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21905 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22635 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_28955 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26190 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_00745 lipid-transfer protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_14325 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_07210 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_28700 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_02160 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D C1M55_28915 3-hydroxybutyryl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D C1M55_19610 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_12340 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_08415 acyl-CoA oxidase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D C1M55_18980 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_24945 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_25400 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_26425 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_11400 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_13255 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_02345 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_08875 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_27670 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_21670 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_23440 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_05915 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_01070 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_14010 acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D C1M55_26180 acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D C1M55_24690 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D C1M55_26200 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_00450 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_00645 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_02120 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_27720 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_17655 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_19970 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_20225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_27695 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_28425 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_04110 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D C1M55_06260 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D C1M55_10995 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D C1M55_12535 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D C1M55_27520 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D C1M55_04125 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D C1M55_18850 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D C1M55_18125 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D C1M55_12475 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D C1M55_29005 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_20285 CoA synthetase C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis [PATH:rqi00100] D C1M55_16810 cytochrome P450 K05917 CYP51; sterol 14alpha-demethylase [EC:1.14.14.154 1.14.15.36] C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:rqi00561] D C1M55_17755 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_07990 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D C1M55_28680 DAK2 domain-containing protein K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15] D C1M55_10610 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D C1M55_23175 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D C1M55_16310 HAD family hydrolase K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21] D C1M55_08245 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D C1M55_07100 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D C1M55_17625 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D C1M55_25320 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D C1M55_14335 wax ester/triacylglycerol synthase family O-acyltransferase K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75] D C1M55_05890 wax ester/triacylglycerol synthase family O-acyltransferase K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75] D C1M55_08250 DUF1298 domain-containing protein K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75] D C1M55_11065 wax ester/triacylglycerol synthase family O-acyltransferase K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75] D C1M55_06290 DUF1298 domain-containing protein K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75] D C1M55_01105 esterase family protein K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122] D C1M55_27325 esterase family protein K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122] D C1M55_17895 esterase family protein K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122] D C1M55_09320 esterase family protein K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122] D C1M55_15270 esterase family protein K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122] D C1M55_07440 esterase family protein K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122] D C1M55_07775 esterase family protein K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122] D C1M55_07780 esterase family protein K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122] D C1M55_20765 esterase family protein K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122] D C1M55_20770 esterase family protein K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122] D C1M55_11355 lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D C1M55_15020 lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D C1M55_03595 lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D C1M55_26770 alpha/beta hydrolase K01054 MGLL; acylglycerol lipase [EC:3.1.1.23] C 00564 Glycerophospholipid metabolism [PATH:rqi00564] D C1M55_12600 NAD(P)-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D C1M55_26810 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D C1M55_13885 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D C1M55_10615 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D C1M55_23170 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D C1M55_08245 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D C1M55_07100 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D C1M55_17625 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D C1M55_25320 diacylglycerol kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107] D C1M55_29055 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D C1M55_00885 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D C1M55_20825 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D C1M55_09170 ethanolamine ammonia-lyase subunit EutB K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D C1M55_09175 ethanolamine ammonia-lyase subunit EutC K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D C1M55_12920 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D C1M55_07675 phosphatidylcholine/phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D C1M55_07680 phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D C1M55_13835 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D C1M55_14470 CDP-alcohol phosphatidyltransferase family protein K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D C1M55_16110 CDP-alcohol phosphatidyltransferase family protein K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] D C1M55_03110 hypothetical protein C 00565 Ether lipid metabolism [PATH:rqi00565] D C1M55_25325 FAD-binding oxidoreductase K00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26] D C1M55_29055 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] C 00600 Sphingolipid metabolism [PATH:rqi00600] D C1M55_04195 alkaline ceramidase K12349 ASAH2; neutral ceramidase [EC:3.5.1.23] D C1M55_17060 aspartate aminotransferase family protein K01634 SGPL1; sphinganine-1-phosphate aldolase [EC:4.1.2.27] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:rqi00592] D C1M55_08415 acyl-CoA oxidase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D C1M55_26190 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_00745 lipid-transfer protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_14325 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_07210 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_28700 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:rqi01040] D C1M55_24415 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D C1M55_19070 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D C1M55_11085 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D C1M55_11080 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D C1M55_25675 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D C1M55_19075 ferredoxin reductase K22770 K22770; stearoyl-CoA 9-desaturase NADPH oxidoreductase D C1M55_11075 ferredoxin reductase K22770 K22770; stearoyl-CoA 9-desaturase NADPH oxidoreductase D C1M55_08415 acyl-CoA oxidase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D C1M55_04720 SGNH/GDSL hydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D C1M55_14510 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D C1M55_14520 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D C1M55_22655 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D C1M55_16650 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:rqi00230] D C1M55_11860 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D C1M55_21705 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D C1M55_24600 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D C1M55_05015 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D C1M55_22285 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D C1M55_07295 formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D C1M55_24620 phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D C1M55_05185 phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D C1M55_05190 phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D C1M55_24580 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D C1M55_10875 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D C1M55_10880 purE; 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D C1M55_05120 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D C1M55_05075 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D C1M55_22280 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D C1M55_14600 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D C1M55_01560 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D C1M55_07250 hypothetical protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D C1M55_07360 HAD family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D C1M55_10460 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D C1M55_17475 peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D C1M55_15420 nucleoside hydrolase K01239 E3.2.2.1; purine nucleosidase [EC:3.2.2.1] D C1M55_03470 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D C1M55_09730 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D C1M55_09735 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D C1M55_18715 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D C1M55_19230 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D C1M55_09755 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D C1M55_15455 GuaB1 family IMP dehydrogenase-related protein K26110 guaB1; GMP reductase [EC:1.7.1.7] D C1M55_20745 guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D C1M55_14985 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D C1M55_12270 class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D C1M55_09860 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D C1M55_12285 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D C1M55_18245 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D C1M55_14605 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D C1M55_08225 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D C1M55_21520 Ppx/GppA family phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D C1M55_09250 GTP pyrophosphokinase K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5] D C1M55_25555 adenylate/guanylate cyclase domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D C1M55_05305 HAMP domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D C1M55_07530 adenylate/guanylate cyclase domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D C1M55_25585 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D C1M55_07245 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D C1M55_17745 carbohydrate kinase family protein K00856 ADK; adenosine kinase [EC:2.7.1.20] D C1M55_10335 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D C1M55_20275 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2] D C1M55_09480 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D C1M55_21645 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D C1M55_20050 phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D C1M55_14465 HIT domain-containing protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] D C1M55_00660 cysC; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D C1M55_08370 sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D C1M55_19540 cysC; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D C1M55_18485 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D C1M55_00665 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_08365 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_18480 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_19545 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_10755 pucL; urate oxidase K00365 uaZ; urate oxidase [EC:1.7.3.3] D C1M55_10760 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D C1M55_10765 uraD; OHCU decarboxylase K16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97] D C1M55_03400 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase K16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97] D C1M55_19210 hydrogenase expression protein HupH K16841 hpxA; allantoin racemase [EC:5.1.99.3] D C1M55_23925 Asp/Glu racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3] D C1M55_23970 allantoinase PuuE K16842 hpxB; allantoinase [EC:3.5.2.5] D C1M55_23975 allantoicase K01477 alc; allantoicase [EC:3.5.3.4] D C1M55_01450 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D C1M55_24455 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D C1M55_01445 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D C1M55_24460 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D C1M55_01440 urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D C1M55_24465 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00240 Pyrimidine metabolism [PATH:rqi00240] D C1M55_14965 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D C1M55_14960 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D C1M55_14945 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D C1M55_14950 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D C1M55_16010 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D C1M55_07080 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D C1M55_14970 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D C1M55_12910 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D C1M55_18715 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D C1M55_21645 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D C1M55_10830 maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D C1M55_16275 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D C1M55_16240 (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D C1M55_06955 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D C1M55_01560 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D C1M55_07250 hypothetical protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D C1M55_07360 HAD family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D C1M55_10450 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D C1M55_30130 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D C1M55_14940 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D C1M55_10325 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D C1M55_26745 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D C1M55_06335 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D C1M55_12270 class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D C1M55_09860 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D C1M55_12285 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D C1M55_11020 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D C1M55_14225 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D C1M55_10330 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D C1M55_22470 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D C1M55_13795 thyX; thymidylate synthase (FAD) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D C1M55_30125 ring-opening amidohydrolase K19794 bar; barbiturase [EC:3.5.2.1] D C1M55_30120 amidase K19795 E3.5.1.95; ureidomalonase [EC:3.5.1.95] D C1M55_24905 malonic semialdehyde reductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:rqi00250] D C1M55_01535 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D C1M55_17135 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D C1M55_27600 aspartate/glutamate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13] D C1M55_28775 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D C1M55_17740 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D C1M55_05195 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D C1M55_06745 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D C1M55_04340 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D C1M55_19525 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D C1M55_28765 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D C1M55_16375 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D C1M55_16370 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D C1M55_25585 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D C1M55_07245 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D C1M55_05075 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D C1M55_14945 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D C1M55_17420 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D C1M55_03290 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_28045 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_26345 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_00485 succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_03295 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_22335 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_00265 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D C1M55_16665 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D C1M55_28925 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D C1M55_00270 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D C1M55_16660 gltD; glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D C1M55_25875 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D C1M55_03280 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D C1M55_18900 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D C1M55_19055 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D C1M55_23680 pruA; 1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D C1M55_25810 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_17840 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_17965 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_19045 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_30570 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_14965 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D C1M55_14960 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D C1M55_14290 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D C1M55_05190 phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D C1M55_09620 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D C1M55_24600 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:rqi00260] D C1M55_02325 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D C1M55_02330 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D C1M55_19465 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D C1M55_19455 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D C1M55_19460 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D C1M55_28665 threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D C1M55_19425 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D C1M55_20975 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D C1M55_17755 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D C1M55_08205 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D C1M55_00350 histidine phosphatase family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D C1M55_11805 nucleotide pyrophosphatase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D C1M55_12520 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D C1M55_23235 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D C1M55_12310 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D C1M55_06365 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D C1M55_16065 gcvP; glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D C1M55_17795 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D C1M55_25440 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_07790 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_23120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_30485 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_16090 gcvH; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D C1M55_07675 phosphatidylcholine/phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D C1M55_28575 gamma-aminobutyraldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D C1M55_22220 gamma-aminobutyraldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D C1M55_30575 phenylacetaldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D C1M55_07385 N-methyl-L-tryptophan oxidase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1] D C1M55_21050 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D C1M55_12605 aminotransferase class V-fold PLP-dependent enzyme K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D C1M55_13045 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D C1M55_09920 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D C1M55_27505 pyridoxal-5'-phosphate-dependent protein subunit beta K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D C1M55_21040 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D C1M55_17365 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D C1M55_04915 amino acid deaminase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D C1M55_16685 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D C1M55_16690 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D C1M55_04310 TrpB-like pyridoxal phosphate-dependent enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D C1M55_18665 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D C1M55_18660 ectA; diaminobutyrate acetyltransferase K06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178] D C1M55_18670 ectC; L-ectoine synthase K06720 ectC; L-ectoine synthase [EC:4.2.1.108] C 00270 Cysteine and methionine metabolism [PATH:rqi00270] D C1M55_05390 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D C1M55_05385 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D C1M55_08475 PLP-dependent cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D C1M55_12605 aminotransferase class V-fold PLP-dependent enzyme K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D C1M55_21050 cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D C1M55_15895 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D C1M55_07985 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D C1M55_23730 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D C1M55_15000 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D C1M55_26315 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D C1M55_12235 nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D C1M55_17475 peptidoglycan editing factor PgeF K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D C1M55_11390 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D C1M55_01645 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_19585 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_31255 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_11015 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D C1M55_02325 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D C1M55_02330 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D C1M55_19465 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D C1M55_10115 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D C1M55_21045 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D C1M55_26045 bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D C1M55_10120 bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D C1M55_07325 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D C1M55_17790 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D C1M55_21760 egtA; ergothioneine biosynthesis glutamate--cysteine ligase EgtA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D C1M55_01535 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D C1M55_06170 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_10805 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_24515 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_17925 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_19740 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_20815 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D C1M55_14635 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D C1M55_27535 D-cysteine desulfhydrase family protein K17950 cuyA; L-cysteate sulfo-lyase [EC:4.4.1.25] D C1M55_13045 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D C1M55_12520 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D C1M55_23235 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:rqi00280] D C1M55_17790 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D C1M55_19895 Glu/Leu/Phe/Val dehydrogenase K00271 vdh; valine dehydrogenase (NAD+) [EC:1.4.1.23] D C1M55_30500 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D C1M55_19770 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D C1M55_19775 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D C1M55_30495 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D C1M55_19780 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D C1M55_30490 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D C1M55_25440 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_07790 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_23120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_30485 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_18980 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_24945 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_25400 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_26425 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_11400 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_13255 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_02345 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_08875 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_27670 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_21670 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_23440 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_05915 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_01070 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D C1M55_10695 acyl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D C1M55_09270 acyl-CoA dehydrogenase K11410 acdH; short-chain 2-methylacyl-CoA dehydrogenase [EC:1.3.8.5] D C1M55_19610 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_12340 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_02160 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D C1M55_28915 3-hydroxybutyryl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D C1M55_26190 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_00745 lipid-transfer protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_14325 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_07210 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_28700 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_10790 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D C1M55_06175 ATP-grasp domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14] D C1M55_10840 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15] D C1M55_18110 propionyl-CoA carboxylase subunit beta K18472 accD6; acetyl-CoA/propionyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.2 6.4.1.3 2.1.3.15] D C1M55_19315 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D C1M55_15400 mutA; methylmalonyl-CoA mutase small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D C1M55_15405 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D C1M55_19615 mmsB; 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D C1M55_10170 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D C1M55_19630 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_03290 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_28045 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_09265 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D C1M55_09260 methylcrotonoyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D C1M55_06180 methylcrotonoyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D C1M55_02380 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D C1M55_17225 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D C1M55_06025 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D C1M55_09285 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D C1M55_26645 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D C1M55_06020 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D C1M55_09290 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D C1M55_26640 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D C1M55_25770 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26145 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_01065 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_06015 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02155 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04430 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04600 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04625 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_05530 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26675 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_27635 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22640 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_19310 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21060 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21905 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22635 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_28955 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rqi00290] D C1M55_09920 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D C1M55_27505 pyridoxal-5'-phosphate-dependent protein subunit beta K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D C1M55_21040 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D C1M55_17365 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D C1M55_12570 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D C1M55_12575 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D C1M55_12525 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D C1M55_16570 isocitrate/isopropylmalate dehydrogenase family protein K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D C1M55_26310 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D C1M55_12505 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D C1M55_12510 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D C1M55_12515 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D C1M55_25540 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D C1M55_12495 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D C1M55_17790 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D C1M55_05195 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D C1M55_06745 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D C1M55_02310 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D C1M55_05290 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:rqi00300] D C1M55_19465 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D C1M55_02325 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D C1M55_02330 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D C1M55_13800 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D C1M55_04705 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D C1M55_17120 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D C1M55_22415 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D C1M55_13590 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D C1M55_20595 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D C1M55_16390 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D C1M55_23515 putative succinyldiaminopimelate transaminase DapC K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D C1M55_26615 hydrolase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D C1M55_20590 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D C1M55_13960 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D C1M55_19120 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D C1M55_19470 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D C1M55_10585 PLP-dependent aminotransferase family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D C1M55_17520 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D C1M55_17515 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:rqi00310] D C1M55_10720 aldehyde dehydrogenase family protein K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase D C1M55_25415 2-oxo acid dehydrogenase subunit E2 K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D C1M55_25440 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_07790 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_23120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_30485 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_24690 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D C1M55_19610 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_12340 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_02160 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D C1M55_28915 3-hydroxybutyryl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D C1M55_25770 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26145 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_01065 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_06015 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02155 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04430 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04600 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04625 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_05530 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26675 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_27635 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22640 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_19310 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21060 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21905 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22635 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_28955 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_03275 FAD-dependent oxidoreductase K00468 davB; lysine 2-monooxygenase [EC:1.13.12.2] D C1M55_03270 carbon-nitrogen hydrolase K01506 davA; 5-aminopentanamidase [EC:3.5.1.30] D C1M55_03290 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_28045 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_26345 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_00485 succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_03295 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_22335 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:rqi00220] D C1M55_16385 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D C1M55_16375 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D C1M55_16370 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D C1M55_14720 urea amidolyase K01941 uca; urea carboxylase [EC:6.3.4.6] D C1M55_07820 atzF; allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D C1M55_01450 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D C1M55_24455 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D C1M55_01445 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D C1M55_24460 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D C1M55_01440 urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D C1M55_24465 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D C1M55_22045 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D C1M55_07040 nitric oxide synthase oxygenase K00491 nos; nitric-oxide synthase, bacterial [EC:1.14.14.47] D C1M55_14290 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D C1M55_05190 phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D C1M55_25810 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_17840 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_17965 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_19045 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_30570 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_14965 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D C1M55_14960 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D C1M55_25875 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D C1M55_03280 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D C1M55_18900 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D C1M55_19055 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D C1M55_01535 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D C1M55_05195 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D C1M55_06745 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D C1M55_13830 amino-acid N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1] D C1M55_16400 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D C1M55_07550 N-acetyltransferase K22476 K22476; N-acetylglutamate synthase [EC:2.3.1.1] D C1M55_16395 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D C1M55_16405 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D C1M55_16390 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D C1M55_02015 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:rqi00330] D C1M55_26745 nucleoside deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D C1M55_30085 hydantoinase/oxoprolinase family protein K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D C1M55_30080 hydantoinase K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D C1M55_22245 agmatine deiminase family protein K10536 aguA; agmatine deiminase [EC:3.5.3.12] D C1M55_28980 agmatine deiminase family protein K10536 aguA; agmatine deiminase [EC:3.5.3.12] D C1M55_22240 hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D C1M55_26315 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D C1M55_14045 aspartate aminotransferase family protein K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D C1M55_30115 aspartate aminotransferase family protein K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D C1M55_22210 FAD-dependent oxidoreductase K03343 puo; putrescine oxidase [EC:1.4.3.10] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_06365 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D C1M55_03260 speB; agmatinase K25365 gbh; guanidinobutyrase / D-arginase [EC:3.5.3.7 3.5.3.10] D C1M55_25260 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_00105 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_00770 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_02755 amiE; acylamide amidohydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_18385 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_19160 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_29640 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_30190 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_30325 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_29185 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_07040 nitric oxide synthase oxygenase K00491 nos; nitric-oxide synthase, bacterial [EC:1.14.14.47] D C1M55_08270 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D C1M55_00495 proline dehydrogenase K00318 PRODH; proline dehydrogenase [EC:1.5.5.2] D C1M55_23685 proline dehydrogenase K00318 PRODH; proline dehydrogenase [EC:1.5.5.2] D C1M55_23680 pruA; 1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D C1M55_18690 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D C1M55_18630 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D C1M55_07135 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit K01259 pip; proline iminopeptidase [EC:3.4.11.5] D C1M55_17985 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D C1M55_28895 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D C1M55_01535 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:rqi00340] D C1M55_15870 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D C1M55_15875 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D C1M55_16935 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D C1M55_16965 bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24] D C1M55_16975 imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D C1M55_16955 imidazole glycerol phosphate synthase cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D C1M55_16985 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D C1M55_25905 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_01565 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_16990 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_18030 threonine-phosphate decarboxylase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_11425 hisN; histidinol-phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15] D C1M55_16995 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D C1M55_25900 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D C1M55_25965 aromatic amino acid lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D C1M55_25920 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D C1M55_25925 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D C1M55_25930 hutG; formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_06365 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D C1M55_21745 egtD; L-histidine N(alpha)-methyltransferase K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44] D C1M55_21755 ergothioneine biosynthesis protein EgtB K18912 egtB; gamma-glutamyl hercynylcysteine S-oxide synthase [EC:1.14.99.50] D C1M55_21750 egtC; ergothioneine biosynthesis protein EgtC K07008 egtC; gamma-glutamyl hercynylcysteine S-oxide hydrolase [EC:3.5.1.118] C 00350 Tyrosine metabolism [PATH:rqi00350] D C1M55_01535 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D C1M55_25905 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_01565 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_16990 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_18030 threonine-phosphate decarboxylase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_25575 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D C1M55_23750 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D C1M55_23760 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D C1M55_06365 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D C1M55_09205 betaine-aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D C1M55_18125 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D C1M55_12475 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D C1M55_29005 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D C1M55_27390 Pyoverdin chromophore biosynthetic protein pvcC K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9] D C1M55_26345 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_00485 succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_03295 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_22335 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_24375 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] D C1M55_11240 maleylpyruvate isomerase family mycothiol-dependent enzyme K16163 K16163; maleylpyruvate isomerase [EC:5.2.1.4] C 00360 Phenylalanine metabolism [PATH:rqi00360] D C1M55_06365 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D C1M55_09205 betaine-aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D C1M55_27950 paaF; phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D C1M55_28010 paaD; phenylacetic acid degradation protein PaaD K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-] D C1M55_27975 1,2-phenylacetyl-CoA epoxidase subunit A K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D C1M55_27970 1,2-phenylacetyl-CoA epoxidase subunit B K02610 paaB; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB D C1M55_27965 paaI; phenylacetate-CoA oxygenase subunit PaaI K02611 paaC; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] D C1M55_27960 paaJ; phenylacetate-CoA oxygenase subunit PaaJ K02612 paaD; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD D C1M55_27955 paaK; phenylacetate-CoA oxygenase/reductase subunit PaaK K02613 paaE; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE D C1M55_12635 enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D C1M55_27980 enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D C1M55_28000 phenylacetic acid degradation bifunctional protein PaaZ K02618 paaZ; oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.3.2.12 1.2.1.91] D C1M55_19610 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_12340 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_25285 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D C1M55_07980 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D C1M55_27985 3-hydroxyacyl-CoA dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D C1M55_01535 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D C1M55_25905 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_01565 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_16990 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_18030 threonine-phosphate decarboxylase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_24375 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] D C1M55_25575 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D C1M55_07705 FAD-dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D C1M55_06100 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D C1M55_25260 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_00105 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_00770 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_02755 amiE; acylamide amidohydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_18385 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_19160 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_29640 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_30190 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_30325 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_29185 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_04125 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D C1M55_18850 FAD-dependent oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D C1M55_19510 FAD-dependent oxidoreductase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] D C1M55_01885 catechol 1,2-dioxygenase K05713 mhpB; 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [EC:1.13.11.16] D C1M55_30820 alpha/beta hydrolase K05714 mhpC; 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase [EC:3.7.1.14] D C1M55_01860 hydrolase K05714 mhpC; 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase [EC:3.7.1.14] D C1M55_01890 alpha/beta hydrolase K05714 mhpC; 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase [EC:3.7.1.14] D C1M55_04075 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D C1M55_29415 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D C1M55_04085 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D C1M55_29425 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D C1M55_04080 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D C1M55_29420 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] C 00380 Tryptophan metabolism [PATH:rqi00380] D C1M55_04935 tryptophan 2,3-dioxygenase K00453 TDO2; tryptophan 2,3-dioxygenase [EC:1.13.11.11] D C1M55_27555 kynB; arylformamidase K07130 kynB; arylformamidase [EC:3.5.1.9] D C1M55_27550 kynU; kynureninase K01556 KYNU; kynureninase [EC:3.7.1.3] D C1M55_02660 3-hydroxyanthranilate 3,4-dioxygenase K00452 HAAO; 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6] D C1M55_02665 aminocarboxymuconate-semialdehyde decarboxylase K03392 ACMSD; aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] D C1M55_02645 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D C1M55_02655 RidA family protein K15067 amnD; 2-aminomuconate deaminase [EC:3.5.99.5] D C1M55_25415 2-oxo acid dehydrogenase subunit E2 K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D C1M55_25440 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_07790 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_23120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_30485 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_24690 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D C1M55_19610 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_12340 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_02160 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D C1M55_28915 3-hydroxybutyryl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D C1M55_25770 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26145 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_01065 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_06015 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02155 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04430 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04600 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04625 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_05530 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26675 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_27635 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22640 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_19310 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21060 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21905 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22635 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_28955 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_06365 FAD-dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_30330 nthA; nitrile hydratase subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D C1M55_30335 nthB; nitrile hydratase subunit beta K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D C1M55_25260 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_00105 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_00770 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_02755 amiE; acylamide amidohydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_18385 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_19160 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_29640 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_30190 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_30325 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_29185 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_02435 catalase K03781 katE; catalase [EC:1.11.1.6] D C1M55_29390 catalase HPII K03781 katE; catalase [EC:1.11.1.6] D C1M55_06100 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rqi00400] D C1M55_17615 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D C1M55_23645 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D C1M55_14910 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D C1M55_14915 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D C1M55_18775 aroQ; type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D C1M55_18765 sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein K26400 quiC1; 3-dehydroshikimate dehydratase [EC:4.2.1.118] D C1M55_18770 shikimate dehydrogenase K25901 qsuD; quinate/shikimate dehydrogenase (NAD+) [EC:1.1.1.24] D C1M55_23615 shikimate dehydrogenase K25901 qsuD; quinate/shikimate dehydrogenase (NAD+) [EC:1.1.1.24] D C1M55_14905 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D C1M55_11095 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D C1M55_14900 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D C1M55_16705 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D C1M55_17690 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D C1M55_24655 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D C1M55_16965 bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24] D C1M55_16695 indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D C1M55_16685 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D C1M55_16690 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D C1M55_04310 TrpB-like pyridoxal phosphate-dependent enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D C1M55_22330 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5] D C1M55_01655 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D C1M55_00965 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D C1M55_01535 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D C1M55_25905 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_01565 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_16990 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_18030 threonine-phosphate decarboxylase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:rqi00410] D C1M55_03550 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D C1M55_17420 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D C1M55_03290 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_28045 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_03545 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D C1M55_19610 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_12340 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_02160 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D C1M55_08415 acyl-CoA oxidase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6] D C1M55_10170 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D C1M55_19630 mmsA; methylmalonate-semialdehyde dehydrogenase (CoA acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:rqi00430] D C1M55_17420 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D C1M55_22680 taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D C1M55_04340 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D C1M55_19525 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D C1M55_25875 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D C1M55_03280 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D C1M55_18900 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D C1M55_07465 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D C1M55_07470 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:rqi00450] D C1M55_21045 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D C1M55_15895 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D C1M55_07985 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D C1M55_23730 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D C1M55_12605 aminotransferase class V-fold PLP-dependent enzyme K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D C1M55_15245 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D C1M55_21770 aminotransferase class V-fold PLP-dependent enzyme K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D C1M55_19920 response regulator K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D C1M55_29830 cyclic nucleotide-binding protein K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D C1M55_30705 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D C1M55_00660 cysC; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D C1M55_08370 sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D C1M55_19540 cysC; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D C1M55_18485 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D C1M55_00665 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_08365 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_18480 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_19545 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_22000 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:rqi00460] D C1M55_18785 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D C1M55_14415 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D C1M55_17010 glycoside hydrolase family 1 protein K05350 bglB; beta-glucosidase [EC:3.2.1.21] D C1M55_28775 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D C1M55_19425 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D C1M55_20975 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D C1M55_07955 acetamidase/formamidase family protein K01455 E3.5.1.49; formamidase [EC:3.5.1.49] C 00470 D-Amino acid metabolism [PATH:rqi00470] D C1M55_09635 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D C1M55_12610 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D C1M55_14290 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D C1M55_05190 phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D C1M55_08965 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D C1M55_17505 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D C1M55_27600 aspartate/glutamate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13] D C1M55_04915 amino acid deaminase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D C1M55_13960 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D C1M55_19120 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D C1M55_19470 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D C1M55_03260 speB; agmatinase K25365 gbh; guanidinobutyrase / D-arginase [EC:3.5.3.7 3.5.3.10] D C1M55_20010 alanine racemase K21898 orr; ornithine racemase [EC:5.1.1.12] D C1M55_07705 FAD-dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:rqi00480] D C1M55_01500 hypothetical protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D C1M55_03880 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D C1M55_01505 allophanate hydrolase subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9] D C1M55_01510 allophanate hydrolase K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D C1M55_05810 glutamate--cysteine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D C1M55_07575 glutamate--cysteine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D C1M55_29375 glutamate--cysteine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D C1M55_21760 egtA; ergothioneine biosynthesis glutamate--cysteine ligase EgtA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D C1M55_17800 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D C1M55_16135 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D C1M55_18855 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D C1M55_10125 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D C1M55_00015 gnd; 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D C1M55_15470 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D C1M55_15170 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D C1M55_05165 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D C1M55_26315 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis [PATH:rqi00515] D C1M55_22015 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] C 00514 Other types of O-glycan biosynthesis [PATH:rqi00514] D C1M55_22015 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation D C1M55_21655 glycosyl hydrolase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25] C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis [PATH:rqi00542] D C1M55_19420 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rqi00541] D C1M55_06585 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D C1M55_22115 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D C1M55_14120 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_08285 NAD-dependent dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_15555 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_16415 epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_01260 epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D C1M55_01080 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D C1M55_06655 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D C1M55_06715 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D C1M55_06730 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D C1M55_01250 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D C1M55_01255 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D C1M55_01245 dTDP-4-keto-6-deoxy-D-glucose epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D C1M55_10920 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D C1M55_12790 dTDP-4-amino-4,6-dideoxygalactose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] D C1M55_02250 DegT/DnrJ/EryC1/StrS aminotransferase family protein K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D C1M55_10980 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D C1M55_10455 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D C1M55_10970 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D C1M55_06645 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D C1M55_06705 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D C1M55_21615 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D C1M55_06650 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D C1M55_06710 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D C1M55_21620 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D C1M55_21700 glmU; bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D C1M55_23630 gfo/Idh/MocA family oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] C 00550 Peptidoglycan biosynthesis [PATH:rqi00550] D C1M55_19360 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D C1M55_08115 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D C1M55_17490 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D C1M55_17505 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D C1M55_17520 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D C1M55_12610 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D C1M55_17515 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D C1M55_18305 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D C1M55_15965 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D C1M55_17510 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D C1M55_19600 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D C1M55_17495 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D C1M55_17525 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D C1M55_00160 penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A D C1M55_10160 penicillin-binding protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D C1M55_03455 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D C1M55_09805 peptidase M15 K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D C1M55_02290 DUF1727 domain-containing protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D C1M55_02285 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] C 00552 Teichoic acid biosynthesis [PATH:rqi00552] D C1M55_15965 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D C1M55_19420 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D C1M55_06700 glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:rqi00543] D C1M55_21610 glycosyltransferase WbuB K03208 wcaI; putative colanic acid biosynthesis glycosyltransferase WcaI D C1M55_21625 putative colanic acid biosynthesis acetyltransferase K03818 wcaF; putative colanic acid biosynthesis acetyltransferase WcaF [EC:2.3.1.-] D C1M55_19420 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D C1M55_05390 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:rqi00730] D C1M55_07535 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D C1M55_12405 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D C1M55_07500 thiO; glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19] D C1M55_14295 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D C1M55_07510 thiG; thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D C1M55_17920 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D C1M55_07495 thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D C1M55_12620 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D C1M55_01290 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D C1M55_11090 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D C1M55_09995 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D C1M55_09480 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D C1M55_26570 transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D C1M55_19850 TenA family transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] C 00740 Riboflavin metabolism [PATH:rqi00740] D C1M55_15060 riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D C1M55_15050 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D C1M55_15065 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D C1M55_19905 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D C1M55_15055 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D C1M55_13375 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D C1M55_31210 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D C1M55_24825 msuE; FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D C1M55_12190 bluB; 5,6-dimethylbenzimidazole synthase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D C1M55_17920 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] C 00750 Vitamin B6 metabolism [PATH:rqi00750] D C1M55_21820 pyridoxal 5'-phosphate synthase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D C1M55_23225 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D C1M55_16140 thiD; bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D C1M55_23235 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D C1M55_19460 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D C1M55_14490 pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D C1M55_14525 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:rqi00760] D C1M55_17135 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D C1M55_17140 quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72] D C1M55_17130 nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D C1M55_19265 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D C1M55_10460 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D C1M55_01560 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D C1M55_07250 hypothetical protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D C1M55_07360 HAD family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D C1M55_18615 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D C1M55_21645 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D C1M55_11295 NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D C1M55_12230 NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D C1M55_13840 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D C1M55_19270 bifunctional nicotinamidase/pyrazinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D C1M55_16295 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D C1M55_23850 Si-specific NAD(P)(+) transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1] D C1M55_19800 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D C1M55_19805 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D C1M55_19795 NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D C1M55_26345 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_00485 succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_03295 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D C1M55_22335 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:rqi00770] D C1M55_26310 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D C1M55_12505 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D C1M55_12510 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D C1M55_12515 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D C1M55_25540 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D C1M55_12495 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D C1M55_17975 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D C1M55_03545 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D C1M55_20985 type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D C1M55_03555 type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D C1M55_14995 coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D C1M55_21645 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D C1M55_12665 phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D C1M55_16535 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D C1M55_21680 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D C1M55_19190 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D C1M55_17790 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D C1M55_03550 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:rqi00780] D C1M55_26270 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_04420 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_05525 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_27485 KR domain-containing protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_27655 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_24665 KR domain-containing protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_18330 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_18960 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_25060 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_26415 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_24010 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_28485 KR domain-containing protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_17250 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D C1M55_06190 aminotransferase class I and II K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D C1M55_17255 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D C1M55_17245 ATP-dependent dethiobiotin synthetase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D C1M55_17175 biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6] D C1M55_10845 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D C1M55_14360 molybdopterin guanine dinucleotide-containing S/N-oxide reductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] C 00785 Lipoic acid metabolism [PATH:rqi00785] D C1M55_17820 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D C1M55_25390 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D C1M55_17825 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D C1M55_13560 lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D C1M55_25440 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_07790 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_23120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_30485 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_00310 pyruvate dehydrogenase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D C1M55_18085 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D C1M55_23125 diaminohydroxyphosphoribosylaminopyrimidine deaminase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D C1M55_17810 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D C1M55_25415 2-oxo acid dehydrogenase subunit E2 K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D C1M55_20345 kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61] D C1M55_30500 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D C1M55_19770 pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D C1M55_19775 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D C1M55_30495 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D C1M55_19780 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D C1M55_30490 2-oxo acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D C1M55_16065 gcvP; glycine dehydrogenase (aminomethyl-transferring) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D C1M55_17795 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D C1M55_16090 gcvH; glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:rqi00790] D C1M55_03510 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D C1M55_09995 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D C1M55_25530 alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D C1M55_03520 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D C1M55_03525 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D C1M55_03515 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D C1M55_20570 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D C1M55_22475 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D C1M55_18725 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D C1M55_15060 riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D C1M55_00145 aminodeoxychorismate/anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D C1M55_09355 pabB; aminodeoxychorismate synthase, component I K13950 pabAB; para-aminobenzoate synthetase [EC:2.6.1.85] D C1M55_24555 4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D C1M55_20700 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D C1M55_12215 GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D C1M55_12205 bifunctional molybdenum cofactor biosynthesis protein MoaC/MoaB K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D C1M55_12200 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D C1M55_12210 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D C1M55_22110 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] C 00670 One carbon pool by folate [PATH:rqi00670] D C1M55_22475 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D C1M55_10095 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D C1M55_16640 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D C1M55_31140 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D C1M55_19425 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D C1M55_20975 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D C1M55_22285 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D C1M55_22280 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D C1M55_15030 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D C1M55_04825 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D C1M55_17795 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D C1M55_15895 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D C1M55_22470 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D C1M55_13795 thyX; thymidylate synthase (FAD) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D C1M55_08070 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D C1M55_17575 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D C1M55_22120 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:rqi00860] D C1M55_01995 tRNA glutamyl-Q(34) synthetase GluQRS K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D C1M55_12540 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D C1M55_08310 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D C1M55_08425 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D C1M55_08325 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D C1M55_08315 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D C1M55_11230 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D C1M55_20670 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D C1M55_14345 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D C1M55_14350 protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15] D C1M55_15340 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D C1M55_14355 hypothetical protein K00435 hemQ; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5] D C1M55_08320 bifunctional uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D C1M55_13215 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D C1M55_15185 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D C1M55_15200 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D C1M55_15685 precorrin-3B C(17)-methyltransferase K13540 cobIJ; precorrin-2 C20-methyltransferase / precorrin-3B C17-methyltransferase [EC:2.1.1.130 2.1.1.131] D C1M55_15675 cobG; precorrin-3B synthase K02229 cobG; precorrin-3B synthase [EC:1.14.13.83] D C1M55_15745 cobM; precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D C1M55_13210 cobalamin biosynthesis protein CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D C1M55_22465 precorrin-6A synthase (deacetylating) K02228 cobF; precorrin-6A synthase [EC:2.1.1.152] D C1M55_15740 cobalt-precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D C1M55_15750 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D C1M55_15680 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D C1M55_13205 cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D C1M55_15670 cobaltochelatase subunit CobN K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D C1M55_19365 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D C1M55_13200 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D C1M55_13140 cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D C1M55_18050 cobalamin biosynthesis protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D C1M55_27020 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D C1M55_17765 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D C1M55_17775 adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D C1M55_17770 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D C1M55_18015 bifunctional RNase H/acid phosphatase K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73] D C1M55_13195 VWA domain-containing protein K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1] D C1M55_22255 magnesium chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1] D C1M55_15975 biliverdin-producing heme oxygenase K21480 HO; heme oxygenase (biliverdin-producing, ferredoxin) [EC:1.14.15.20] D C1M55_15760 PPOX class F420-dependent oxidoreductase K23825 K23825; F420H(2)-dependent biliverdin reductase [EC:1.3.98.-] D C1M55_00900 bacterioferritin K22336 bfrB; bacterioferritin B [EC:1.16.3.1] D C1M55_00935 bacterioferritin K22336 bfrB; bacterioferritin B [EC:1.16.3.1] D C1M55_27095 multicopper oxidase family protein K22552 mmcO; multicopper oxidase [EC:1.16.3.1] D C1M55_27055 multicopper oxidase family protein K22552 mmcO; multicopper oxidase [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rqi00130] D C1M55_08625 demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D C1M55_13615 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2] D C1M55_05500 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2] D C1M55_08610 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D C1M55_25250 menC; o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D C1M55_04950 menC; o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D C1M55_08590 O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D C1M55_08525 2-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D C1M55_08580 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D C1M55_15515 PaaI family thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D C1M55_08505 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D C1M55_09905 flavodoxin family protein K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D C1M55_07805 SDR family NAD(P)-dependent oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D C1M55_27435 hypothetical protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D C1M55_22420 SDR family NAD(P)-dependent oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D C1M55_30075 nmra family transcriptional regulator K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D C1M55_29075 hydroxylase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D C1M55_25575 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:rqi00900] D C1M55_14295 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D C1M55_12950 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D C1M55_03815 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D C1M55_21925 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D C1M55_03820 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D C1M55_12960 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D C1M55_20890 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D C1M55_25770 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26145 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_01065 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_06015 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02155 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04430 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04600 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04625 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_05530 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26675 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_27635 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22640 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_19310 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21060 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21905 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22635 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_28955 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_17220 hydroxymethylglutaryl-CoA reductase, degradative K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] D C1M55_17580 geranylgeranyl pyrophosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D C1M55_20990 isoprenyl transferase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68] D C1M55_18305 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:rqi00906] D C1M55_17595 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D C1M55_17585 phytoene desaturase K10027 crtI; phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31] D C1M55_15275 lycopene cyclase family protein K06443 lcyB; lycopene beta-cyclase [EC:5.5.1.19] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:rqi00903] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_23375 LLM class flavin-dependent oxidoreductase K14733 limB; limonene 1,2-monooxygenase [EC:1.14.13.107] D C1M55_23100 LLM class flavin-dependent oxidoreductase K14733 limB; limonene 1,2-monooxygenase [EC:1.14.13.107] D C1M55_19530 limonene-1,2-epoxide hydrolase K10533 E3.3.2.8; limonene-1,2-epoxide hydrolase [EC:3.3.2.8] D C1M55_20950 epoxide hydrolase K10533 E3.3.2.8; limonene-1,2-epoxide hydrolase [EC:3.3.2.8] D C1M55_29755 hypothetical protein K10533 E3.3.2.8; limonene-1,2-epoxide hydrolase [EC:3.3.2.8] D C1M55_22570 nuclear transport factor 2 family protein K10533 E3.3.2.8; limonene-1,2-epoxide hydrolase [EC:3.3.2.8] D C1M55_26785 alpha/beta hydrolase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D C1M55_20365 steryl acetyl hydrolase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation [PATH:rqi00907] D C1M55_19610 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_12340 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_02160 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D C1M55_02255 KR domain-containing protein K13775 atuG; citronellol/citronellal dehydrogenase D C1M55_26815 short chain dehydrogenase K13775 atuG; citronellol/citronellal dehydrogenase D C1M55_02380 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D C1M55_17225 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D C1M55_26190 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_00745 lipid-transfer protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_14325 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_07210 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_28700 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_28915 3-hydroxybutyryl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D C1M55_15180 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics D C1M55_02140 KR domain-containing protein K15314 sgcE; enediyne polyketide synthase C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:rqi00523] D C1M55_01250 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D C1M55_01255 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D C1M55_01245 dTDP-4-keto-6-deoxy-D-glucose epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D C1M55_10920 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures [PATH:rqi01054] D C1M55_27600 aspartate/glutamate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13] C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:rqi01053] D C1M55_13615 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2] D C1M55_05500 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2] D C1M55_13635 2,3-dihydro-2,3-dihydroxybenzoate synthetase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14] D C1M55_13625 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase K00216 entA; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [EC:1.3.1.28] D C1M55_13630 entE; 2,3-dihydroxybenzoate-AMP ligase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71] C 01055 Biosynthesis of vancomycin group antibiotics D C1M55_01255 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:rqi00946] D C1M55_18785 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D C1M55_14415 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D C1M55_17010 glycoside hydrolase family 1 protein K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism D C1M55_10755 pucL; urate oxidase K00365 uaZ; urate oxidase [EC:1.7.3.3] C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D C1M55_04960 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:rqi00332] D C1M55_18690 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D C1M55_18630 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:rqi00261] D C1M55_04865 MbtH family protein K05375 mbtH; MbtH protein D C1M55_00660 cysC; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D C1M55_08370 sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D C1M55_19540 cysC; adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D C1M55_18485 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D C1M55_00665 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_08365 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_18480 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_19545 sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D C1M55_02325 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D C1M55_02330 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D C1M55_13800 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D C1M55_04705 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D C1M55_17120 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D C1M55_22415 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D C1M55_13590 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:rqi00521] D C1M55_05450 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_17630 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_04710 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_11860 alpha-D-glucose phosphate-specific phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D C1M55_29945 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D C1M55_14205 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D C1M55_16960 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D C1M55_10180 inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D C1M55_10255 dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D C1M55_10290 dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D C1M55_04700 gfo/Idh/MocA family oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D C1M55_01250 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D C1M55_01255 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D C1M55_01245 dTDP-4-keto-6-deoxy-D-glucose epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D C1M55_10920 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D C1M55_05450 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_17630 glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D C1M55_04710 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:rqi00525] D C1M55_01250 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D C1M55_01255 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:rqi00401] D C1M55_01655 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D C1M55_01535 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D C1M55_25905 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_01565 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_16990 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_18030 threonine-phosphate decarboxylase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D C1M55_16705 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D C1M55_18095 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D C1M55_26270 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_04420 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_05525 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_27485 KR domain-containing protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_27655 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_24665 KR domain-containing protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_18330 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_18960 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_25060 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_26415 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_24010 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_28485 KR domain-containing protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D C1M55_18100 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:rqi00999] D C1M55_15000 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D C1M55_18785 glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D C1M55_14415 beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21] D C1M55_17010 glycoside hydrolase family 1 protein K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites D C1M55_20010 alanine racemase K21898 orr; ornithine racemase [EC:5.1.1.12] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:rqi00362] D C1M55_27395 benA; benzoate 1,2-dioxygenase large subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D C1M55_27400 benB; benzoate 1,2-dioxygenase small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D C1M55_27405 FCD domain-containing protein K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D C1M55_27410 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D C1M55_27370 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D C1M55_27365 chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D C1M55_27360 catC; muconolactone delta-isomerase K03464 catC; muconolactone D-isomerase [EC:5.3.3.4] D C1M55_26665 3-oxoadipate enol-lactonase K14727 pcaL; 3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase [EC:3.1.1.24 4.1.1.44] D C1M55_26190 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_00745 lipid-transfer protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_14325 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_07210 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_28700 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_04075 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D C1M55_29415 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D C1M55_04085 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D C1M55_29425 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D C1M55_04080 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D C1M55_29420 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D C1M55_02645 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D C1M55_02650 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D C1M55_04350 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] D C1M55_29715 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] D C1M55_26655 pcaG; protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D C1M55_26650 pcaH; protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D C1M55_26660 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] D C1M55_20955 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D C1M55_16850 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D C1M55_01530 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] D C1M55_28450 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D C1M55_02160 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D C1M55_24690 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D C1M55_19610 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_12340 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_25285 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D C1M55_07980 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D C1M55_27985 3-hydroxyacyl-CoA dehydrogenase family protein K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D C1M55_25770 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26145 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_01065 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_06015 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02155 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04430 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04600 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04625 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_05530 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26675 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_27635 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22640 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_19310 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21060 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21905 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22635 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_28955 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:rqi00627] D C1M55_24845 NAD(P)/FAD-dependent oxidoreductase K10215 ethA; monooxygenase [EC:1.14.13.-] D C1M55_27225 NAD(P)/FAD-dependent oxidoreductase K10215 ethA; monooxygenase [EC:1.14.13.-] D C1M55_30330 nthA; nitrile hydratase subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D C1M55_30335 nthB; nitrile hydratase subunit beta K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D C1M55_25260 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_00105 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_00770 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_02755 amiE; acylamide amidohydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_18385 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_19160 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_29640 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_30190 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_30325 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_29185 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_12705 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D C1M55_27350 benzaldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D C1M55_28470 benzaldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D C1M55_19610 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_12340 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00364 Fluorobenzoate degradation [PATH:rqi00364] D C1M55_27395 benA; benzoate 1,2-dioxygenase large subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D C1M55_27400 benB; benzoate 1,2-dioxygenase small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D C1M55_27405 FCD domain-containing protein K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D C1M55_27410 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D C1M55_27370 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D C1M55_01570 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D C1M55_26690 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D C1M55_27540 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D C1M55_27365 chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D C1M55_30330 nthA; nitrile hydratase subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D C1M55_30335 nthB; nitrile hydratase subunit beta K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D C1M55_04350 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] D C1M55_29715 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] C 00625 Chloroalkane and chloroalkene degradation [PATH:rqi00625] D C1M55_05860 haloalkane dehalogenase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5] D C1M55_12475 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D C1M55_29005 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D C1M55_18125 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D C1M55_16835 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02905 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_02975 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_05435 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29270 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D C1M55_29780 aldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D C1M55_08995 mdo; NDMA-dependent methanol dehydrogenase K17067 mdo; formaldehyde dismutase / methanol dehydrogenase [EC:1.2.98.1 1.1.99.37] D C1M55_29115 alpha/beta hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] D C1M55_30415 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:rqi00361] D C1M55_05860 haloalkane dehalogenase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5] D C1M55_27370 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D C1M55_01570 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D C1M55_26690 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D C1M55_27540 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D C1M55_04350 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] D C1M55_29715 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] D C1M55_30810 hypothetical protein K10676 tfdB; 2,4-dichlorophenol 6-monooxygenase [EC:1.14.13.20] D C1M55_27365 chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D C1M55_30415 haloacid dehalogenase type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D C1M55_29115 alpha/beta hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] C 00623 Toluene degradation [PATH:rqi00623] D C1M55_24375 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] D C1M55_27350 benzaldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D C1M55_28470 benzaldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D C1M55_27370 catA; catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1] D C1M55_27365 chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D C1M55_01570 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D C1M55_26690 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D C1M55_27540 dienelactone hydrolase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D C1M55_04350 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] D C1M55_29715 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32] C 00622 Xylene degradation [PATH:rqi00622] D C1M55_24375 NAD(P)-dependent alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90] D C1M55_27350 benzaldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D C1M55_28470 benzaldehyde dehydrogenase K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] D C1M55_27395 benA; benzoate 1,2-dioxygenase large subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-] D C1M55_27400 benB; benzoate 1,2-dioxygenase small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-] D C1M55_27405 FCD domain-containing protein K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-] D C1M55_27410 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-] D C1M55_02645 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D C1M55_02650 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D C1M55_04075 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D C1M55_29415 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D C1M55_04085 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D C1M55_29425 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D C1M55_04080 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D C1M55_29420 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] C 00633 Nitrotoluene degradation D C1M55_13420 hydrogenase K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D C1M55_13415 hydrogenase expression protein HypE K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] C 00642 Ethylbenzene degradation D C1M55_26190 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_00745 lipid-transfer protein K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_14325 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_07210 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D C1M55_28700 acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:rqi00643] D C1M55_09205 betaine-aldehyde dehydrogenase K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39] D C1M55_23750 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D C1M55_23760 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D C1M55_30330 nthA; nitrile hydratase subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D C1M55_30335 nthB; nitrile hydratase subunit beta K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D C1M55_25260 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_00105 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_00770 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_02755 amiE; acylamide amidohydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_18385 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_19160 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_29640 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_30190 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_30325 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_29185 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D C1M55_10595 CoA transferase subunit A K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D C1M55_10590 3-oxoadipate--succinyl-CoA transferase subunit B K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] C 00791 Atrazine degradation [PATH:rqi00791] D C1M55_07820 atzF; allophanate hydrolase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D C1M55_14720 urea amidolyase K01941 uca; urea carboxylase [EC:6.3.4.6] D C1M55_01450 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D C1M55_24455 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D C1M55_01445 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D C1M55_24460 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D C1M55_01440 urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D C1M55_24465 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:rqi00930] D C1M55_04110 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D C1M55_06260 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D C1M55_10995 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D C1M55_12535 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D C1M55_27520 alkane 1-monooxygenase K00496 alkB1_2; alkane 1-monooxygenase [EC:1.14.15.3] D C1M55_30530 hypothetical protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D C1M55_26785 alpha/beta hydrolase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D C1M55_20365 steryl acetyl hydrolase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D C1M55_26275 acyl-CoA dehydrogenase K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-] D C1M55_19610 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_12340 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D C1M55_02160 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D C1M55_28915 3-hydroxybutyryl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] C 00363 Bisphenol degradation D C1M55_29730 NAD(P)/FAD-dependent oxidoreductase K14520 hapE; 4-hydroxyacetophenone monooxygenase [EC:1.14.13.84] C 00621 Dioxin degradation [PATH:rqi00621] D C1M55_02650 4-oxalocrotonate decarboxylase K01617 dmpH; 2-oxo-3-hexenedioate decarboxylase [EC:4.1.1.77] D C1M55_04075 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D C1M55_29415 2-keto-4-pentenoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D C1M55_04085 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D C1M55_29425 dmpG; 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D C1M55_04080 acetaldehyde dehydrogenase (acetylating) K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D C1M55_29420 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] C 00626 Naphthalene degradation [PATH:rqi00626] D C1M55_12475 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D C1M55_29005 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D C1M55_18125 NDMA-dependent alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation D C1M55_26655 pcaG; protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D C1M55_26650 pcaH; protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation [PATH:rqi00984] D C1M55_09740 GMC family oxidoreductase K03333 choD; cholesterol oxidase [EC:1.1.3.6] D C1M55_14315 cholesterol oxidase K03333 choD; cholesterol oxidase [EC:1.1.3.6] D C1M55_02420 GMC family oxidoreductase K03333 choD; cholesterol oxidase [EC:1.1.3.6] D C1M55_05020 GMC family oxidoreductase K03333 choD; cholesterol oxidase [EC:1.1.3.6] D C1M55_15665 GMC family oxidoreductase K03333 choD; cholesterol oxidase [EC:1.1.3.6] D C1M55_07640 cytochrome P450 K15981 CYP125A; cholest-4-en-3-one 26-monooxygenase [EC:1.14.15.29] D C1M55_04605 cytochrome P450 K15981 CYP125A; cholest-4-en-3-one 26-monooxygenase [EC:1.14.15.29] D C1M55_16785 cytochrome P450 K15981 CYP125A; cholest-4-en-3-one 26-monooxygenase [EC:1.14.15.29] D C1M55_04210 cytochrome P450 K16046 CYP142; cholest-4-en-3-one 26-monooxygenase [EC:1.14.15.28] D C1M55_14680 FAD-binding protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4] D C1M55_04065 FAD-binding protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4] D C1M55_18985 FAD-binding protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4] D C1M55_25780 FAD-binding protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4] D C1M55_06235 FAD-binding protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4] D C1M55_16725 FAD-binding protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4] D C1M55_25820 3-ketosteroid-9-alpha-hydroxylase subunit A K15982 kshA; 3-ketosteroid 9alpha-monooxygenase subunit A [EC:1.14.15.30] D C1M55_04145 3-ketosteroid-9-alpha-hydroxylase subunit A K15982 kshA; 3-ketosteroid 9alpha-monooxygenase subunit A [EC:1.14.15.30] D C1M55_04545 3-ketosteroid-9-alpha-hydroxylase subunit A K15982 kshA; 3-ketosteroid 9alpha-monooxygenase subunit A [EC:1.14.15.30] D C1M55_07005 3-ketosteroid-9-alpha-hydroxylase K15982 kshA; 3-ketosteroid 9alpha-monooxygenase subunit A [EC:1.14.15.30] D C1M55_08985 3-ketosteroid-9-alpha-hydroxylase K15983 kshB; 3-ketosteroid 9alpha-monooxygenase subunit B [EC:1.14.15.30] D C1M55_25815 flavin-dependent monooxygenase K16047 hsaA; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase [EC:1.14.14.12] D C1M55_04150 flavin-dependent monooxygenase K16047 hsaA; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase [EC:1.14.14.12] D C1M55_26055 hydroxylase K16047 hsaA; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase [EC:1.14.14.12] D C1M55_07000 hydroxylase K16047 hsaA; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase [EC:1.14.14.12] D C1M55_18915 hydroxylase K16047 hsaA; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase [EC:1.14.14.12] D C1M55_04165 flavin reductase K16048 hsaB; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase reductase component [EC:1.5.1.-] D C1M55_04160 2,3-dihydroxybiphenyl 1,2-dioxygenase K16049 hsaC; 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione 4,5-dioxygenase [EC:1.13.11.25] D C1M55_26050 bphC; biphenyl-2,3-diol 1,2-dioxygenase K16049 hsaC; 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione 4,5-dioxygenase [EC:1.13.11.25] D C1M55_06995 bphC; biphenyl-2,3-diol 1,2-dioxygenase K16049 hsaC; 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione 4,5-dioxygenase [EC:1.13.11.25] D C1M55_04155 alpha/beta hydrolase K16050 hsaD; 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase [EC:3.7.1.17] D C1M55_04410 fatty acid--CoA ligase K18687 fadD3; HIP---CoA ligase [EC:6.2.1.41] D C1M55_06975 steroid delta-isomerase K01822 E5.3.3.1; steroid Delta-isomerase [EC:5.3.3.1] D C1M55_30540 steroid delta-isomerase K01822 E5.3.3.1; steroid Delta-isomerase [EC:5.3.3.1] D C1M55_04615 ketosteroid isomerase K01822 E5.3.3.1; steroid Delta-isomerase [EC:5.3.3.1] D C1M55_08375 isomerase K01822 E5.3.3.1; steroid Delta-isomerase [EC:5.3.3.1] D C1M55_04070 FAD-binding protein K16051 tesI; 3-oxo-5alpha-steroid 4-dehydrogenase [EC:1.3.99.5] D C1M55_21775 FAD-binding protein K16051 tesI; 3-oxo-5alpha-steroid 4-dehydrogenase [EC:1.3.99.5] D C1M55_16855 FAD-binding protein K16051 tesI; 3-oxo-5alpha-steroid 4-dehydrogenase [EC:1.3.99.5] C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:rqi03020] D C1M55_08775 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D C1M55_08780 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D C1M55_09515 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D C1M55_14990 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D C1M55_23385 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:rqi03010] D C1M55_16545 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D C1M55_12900 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D C1M55_09405 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D C1M55_09510 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D C1M55_09460 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D C1M55_29870 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D C1M55_08920 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D C1M55_09445 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D C1M55_09590 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D C1M55_09370 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D C1M55_09505 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D C1M55_08915 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D C1M55_09500 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D C1M55_09440 30S ribosomal protein S14 type Z K02954 RP-S14; small subunit ribosomal protein S14 D C1M55_22190 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D C1M55_13380 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D C1M55_12745 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D C1M55_09420 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D C1M55_22195 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D C1M55_29860 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D C1M55_09395 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D C1M55_18575 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D C1M55_08700 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D C1M55_09390 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D C1M55_09375 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D C1M55_09380 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D C1M55_09435 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D C1M55_09450 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D C1M55_08715 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D C1M55_29855 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D C1M55_08710 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D C1M55_08695 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D C1M55_09585 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D C1M55_09425 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D C1M55_09470 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D C1M55_09410 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D C1M55_09520 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D C1M55_09455 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D C1M55_12810 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D C1M55_16450 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D C1M55_18705 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D C1M55_09400 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D C1M55_09385 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D C1M55_09430 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D C1M55_21790 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D C1M55_18700 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D C1M55_12640 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D C1M55_22180 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D C1M55_09415 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D C1M55_09465 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D C1M55_22170 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31 D C1M55_19445 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D C1M55_12680 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D C1M55_22165 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D C1M55_08665 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D C1M55_22185 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D C1M55_30770 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D C1M55_16455 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D C1M55_09495 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D C1M55_02890 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D C1M55_02895 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D C1M55_02900 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:rqi00970] D C1M55_11880 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D C1M55_00065 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D C1M55_22095 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D C1M55_01580 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D C1M55_19010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D C1M55_19495 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D C1M55_22670 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D C1M55_18225 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D C1M55_24050 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D C1M55_21355 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D C1M55_13685 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D C1M55_19590 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D C1M55_14440 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D C1M55_21695 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D C1M55_12545 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D C1M55_12550 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D C1M55_24055 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D C1M55_14430 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D C1M55_18820 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D C1M55_14445 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D C1M55_06330 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D C1M55_20830 tRNA-His K14226 tRNA-His; tRNA His D C1M55_28235 tRNA-His K14226 tRNA-His; tRNA His D C1M55_19135 tRNA-His K14226 tRNA-His; tRNA His D C1M55_00060 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D C1M55_21515 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D C1M55_16030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D C1M55_16630 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D C1M55_19205 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D C1M55_00185 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D C1M55_16025 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D C1M55_19155 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D C1M55_19165 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D C1M55_24075 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D C1M55_26565 tRNA-Met K14230 tRNA-Met; tRNA Met D C1M55_18210 tRNA-Met K14230 tRNA-Met; tRNA Met D C1M55_08660 tRNA-Met K14230 tRNA-Met; tRNA Met D C1M55_11350 tRNA-Met K14230 tRNA-Met; tRNA Met D C1M55_24045 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D C1M55_18815 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D C1M55_16230 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D C1M55_02600 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D C1M55_01335 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D C1M55_01575 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D C1M55_01675 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D C1M55_02055 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D C1M55_08655 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D C1M55_04875 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D C1M55_02870 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D C1M55_08680 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D C1M55_08650 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D C1M55_14425 tRNA-Val K14237 tRNA-Val; tRNA Val D C1M55_14450 tRNA-Val K14237 tRNA-Val; tRNA Val D C1M55_14435 tRNA-Val K14237 tRNA-Val; tRNA Val D C1M55_18060 tRNA-Val K14237 tRNA-Val; tRNA Val D C1M55_01995 tRNA glutamyl-Q(34) synthetase GluQRS K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D C1M55_12540 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D C1M55_12440 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D C1M55_20970 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D C1M55_12470 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D C1M55_12435 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D C1M55_14870 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D C1M55_14845 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D C1M55_18285 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D C1M55_14460 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D C1M55_04180 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D C1M55_01010 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D C1M55_03825 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D C1M55_22000 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D C1M55_15030 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D C1M55_04825 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D C1M55_18730 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D C1M55_30590 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D C1M55_17440 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D C1M55_00365 lysS; bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D C1M55_03585 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D C1M55_19475 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D C1M55_13240 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D C1M55_14625 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D C1M55_16440 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D C1M55_16435 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D C1M55_16335 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D C1M55_10150 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:rqi03060] D C1M55_09475 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D C1M55_08685 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D C1M55_15115 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D C1M55_14585 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D C1M55_14590 protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D C1M55_14580 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D C1M55_23890 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D C1M55_30755 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D C1M55_11050 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D C1M55_12735 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D C1M55_02060 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D C1M55_12715 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D C1M55_17640 arsenic-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D C1M55_06375 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D C1M55_15790 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D C1M55_20510 tatB; twin-arginine translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB D C1M55_15785 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC D C1M55_12815 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D C1M55_27900 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D C1M55_17405 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D C1M55_25005 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D C1M55_07345 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D C1M55_07860 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:rqi04122] D C1M55_12405 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D C1M55_06170 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_10805 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_24515 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_17925 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_19740 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D C1M55_12410 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D C1M55_12200 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D C1M55_12215 GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D C1M55_12220 MoaD/ThiS family protein K03636 moaD; sulfur-carrier protein D C1M55_11195 adenylyltransferase/sulfurtransferase MoeZ K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-] D C1M55_12205 bifunctional molybdenum cofactor biosynthesis protein MoaC/MoaB K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D C1M55_07505 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome [PATH:rqi03050] D C1M55_15845 arc; proteasome-associated ATPase K13527 mpa; proteasome-associated ATPase D C1M55_15815 prcA; proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D C1M55_15820 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03018 RNA degradation [PATH:rqi03018] D C1M55_18710 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D C1M55_21535 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D C1M55_13385 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D C1M55_20205 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D C1M55_18655 recombinase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D C1M55_19450 transcription termination factor Rho K03628 rho; transcription termination factor Rho D C1M55_13805 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D C1M55_06840 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D C1M55_29795 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D C1M55_09685 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D C1M55_07740 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D C1M55_12590 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D C1M55_07760 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D C1M55_23080 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D C1M55_30665 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:rqi03030] D C1M55_25255 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_11545 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_17680 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_17385 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D C1M55_02135 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D C1M55_02865 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D C1M55_18580 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D C1M55_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D C1M55_28305 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D C1M55_29850 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D C1M55_18235 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D C1M55_19000 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C1M55_29865 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C1M55_26120 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D C1M55_18015 bifunctional RNase H/acid phosphatase K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73] D C1M55_12820 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D C1M55_16595 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D C1M55_12420 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:rqi03410] D C1M55_02705 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D C1M55_12630 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D C1M55_03725 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D C1M55_16340 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D C1M55_12690 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D C1M55_22450 Fpg/Nei family DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D C1M55_10675 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D C1M55_18830 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D C1M55_26390 DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D C1M55_20555 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D C1M55_20790 mismatch-specific DNA-glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] D C1M55_07545 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D C1M55_10135 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D C1M55_16595 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D C1M55_12420 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:rqi03420] D C1M55_21650 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D C1M55_16485 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D C1M55_16525 excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D C1M55_15075 excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D C1M55_11280 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D C1M55_11305 ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D C1M55_22325 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D C1M55_16595 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D C1M55_12420 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D C1M55_23385 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03430 Mismatch repair [PATH:rqi03430] D C1M55_11280 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D C1M55_11305 ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D C1M55_22325 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D C1M55_20900 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D C1M55_20905 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D C1M55_19000 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C1M55_29865 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C1M55_17385 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D C1M55_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D C1M55_28305 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D C1M55_02135 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D C1M55_18580 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D C1M55_02865 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D C1M55_25255 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_11545 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_17680 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_12420 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:rqi03440] D C1M55_19000 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C1M55_29865 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C1M55_00020 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D C1M55_18310 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D C1M55_02210 recombination protein RecR K06187 recR; recombination protein RecR D C1M55_13900 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D C1M55_16595 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D C1M55_14570 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D C1M55_14575 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D C1M55_14565 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D C1M55_12650 DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D C1M55_04260 AAA family ATPase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D C1M55_04255 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D C1M55_04265 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D C1M55_17385 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D C1M55_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D C1M55_28305 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D C1M55_02135 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D C1M55_18580 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D C1M55_02865 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D C1M55_25255 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_11545 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_17680 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_15005 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:rqi03450] D C1M55_15265 Ku protein K10979 ku; DNA end-binding protein Ku D C1M55_22740 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:rqi03250] D C1M55_00090 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:rqi02010] D C1M55_18520 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D C1M55_18515 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D C1M55_18510 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D C1M55_18505 sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D C1M55_24765 aliphatic sulfonate ABC transporter substrate-binding protein K15551 tauA; taurine transport system substrate-binding protein D C1M55_24770 ABC transporter permease K15552 tauC; taurine transport system permease protein D C1M55_24760 ABC transporter ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D C1M55_29990 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D C1M55_30025 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D C1M55_29995 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D C1M55_30000 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D C1M55_23500 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D C1M55_23495 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D C1M55_23490 molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D C1M55_12985 ABC transporter permease K11082 phnV; 2-aminoethylphosphonate transport system permease protein D C1M55_12990 2-aminoethylphosphonate ABC transporter permease subunit K11083 phnU; 2-aminoethylphosphonate transport system permease protein D C1M55_12995 ABC transporter ATP-binding protein K11084 phnT; 2-aminoethylphosphonate transport system ATP-binding protein D C1M55_24925 glycine/betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D C1M55_25945 glycine/betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D C1M55_20370 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D C1M55_20375 glycine/betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D C1M55_24910 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D C1M55_24920 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D C1M55_25955 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D C1M55_25950 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D C1M55_20385 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D C1M55_20390 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D C1M55_24915 ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D C1M55_25960 glycine/betaine ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D C1M55_20380 proline/glycine betaine ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D C1M55_18155 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D C1M55_20455 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D C1M55_30235 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D C1M55_18170 sugar ABC transporter substrate-binding protein K10227 smoE; polyol transport system substrate-binding protein D C1M55_18165 sugar ABC transporter permease K10228 smoF; polyol transport system permease protein D C1M55_18160 carbohydrate ABC transporter permease K10229 smoG; polyol transport system permease protein D C1M55_30230 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D C1M55_20470 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D C1M55_30225 sugar ABC transporter permease K10237 thuF; trehalose/maltose transport system permease protein D C1M55_20465 sugar ABC transporter permease K10237 thuF; trehalose/maltose transport system permease protein D C1M55_20460 carbohydrate ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D C1M55_30220 carbohydrate ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D C1M55_03735 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_03740 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_03750 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_03755 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04490 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04495 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04505 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04510 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04770 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04775 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04780 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04785 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04790 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04795 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_08740 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_08745 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_08755 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_08760 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_23940 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_16745 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_16750 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_16755 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_16760 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_16765 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_16770 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_03745 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_03760 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04500 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04515 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_08735 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_08750 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_03765 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_03770 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_04520 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_04525 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_04760 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_04765 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_08725 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_08730 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_16775 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_16780 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_08720 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D C1M55_26595 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D C1M55_26585 ABC transporter permease K10440 rbsC; ribose transport system permease protein D C1M55_26590 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D C1M55_25130 ABC transporter substrate-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D C1M55_25140 sugar ABC transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D C1M55_25135 carbohydrate ABC transporter permease K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D C1M55_25125 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D C1M55_24485 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D C1M55_24480 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D C1M55_24475 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D C1M55_24470 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D C1M55_21980 glutamine ABC transporter permease K10036 glnH; glutamine transport system substrate-binding protein D C1M55_21985 amino acid ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D C1M55_13920 glutamate-binding protein K10005 gluB; glutamate transport system substrate-binding protein D C1M55_13915 amino acid ABC transporter permease K10006 gluC; glutamate transport system permease protein D C1M55_13910 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein D C1M55_13925 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1] D C1M55_07910 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D C1M55_06860 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D C1M55_22580 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D C1M55_16620 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D C1M55_06865 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_22590 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_07915 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_08555 ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_16600 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_06870 branched-chain amino acid ABC transporter substrate-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_16605 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D C1M55_07920 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D C1M55_22585 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D C1M55_08560 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_22600 livG; ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_16610 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_07925 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_07930 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_06875 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_08565 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_16615 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_22595 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_25660 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D C1M55_25670 ABC transporter permease K02072 metI; D-methionine transport system permease protein D C1M55_25665 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D C1M55_07900 urtA; urea ABC transporter substrate-binding protein K11959 urtA; urea transport system substrate-binding protein D C1M55_02765 hypothetical protein K11959 urtA; urea transport system substrate-binding protein D C1M55_30320 nitrile hydratase K11959 urtA; urea transport system substrate-binding protein D C1M55_07895 urtB; urea ABC transporter permease subunit UrtB K11960 urtB; urea transport system permease protein D C1M55_07890 urtC; urea ABC transporter permease subunit UrtC K11961 urtC; urea transport system permease protein D C1M55_07885 urtD; urea ABC transporter ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein D C1M55_07880 urtE; urea ABC transporter ATP-binding subunit UrtE K11963 urtE; urea transport system ATP-binding protein D C1M55_02780 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D C1M55_02785 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D C1M55_02790 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D C1M55_02795 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D C1M55_29310 Fe2+-enterobactin ABC transporter substrate-binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D C1M55_13650 iron siderophore-binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D C1M55_05095 Fe2+-enterobactin ABC transporter substrate-binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D C1M55_27295 ABC transporter substrate-binding protein K25287 desE; iron-desferrioxamine transport system substrate-binding protein D C1M55_21860 ABC transporter substrate-binding protein K25287 desE; iron-desferrioxamine transport system substrate-binding protein D C1M55_12840 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_18750 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_29495 iron ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_05030 ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_13110 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_17090 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_14305 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_18535 ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_28870 ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_23290 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_20755 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_07795 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_01590 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_12300 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_05160 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_02490 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_05115 ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_00785 ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_01595 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein D C1M55_15505 iron ABC transporter K23186 fepD; iron-siderophore transport system permease protein D C1M55_21880 Fe(3+)-siderophore ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein D C1M55_29305 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein D C1M55_29300 Fe(3+)-hydroxamate ABC transporter permease FhuB K23187 fepG; iron-siderophore transport system permease protein D C1M55_01600 ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein D C1M55_15500 iron ABC transporter K23187 fepG; iron-siderophore transport system permease protein D C1M55_21875 iron ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein D C1M55_29295 fecE; ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D C1M55_01605 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D C1M55_15495 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D C1M55_21870 fecE; ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D C1M55_30460 metal ABC transporter substrate-binding protein K11601 mntC; manganese transport system substrate-binding protein D C1M55_30450 metal ABC transporter permease K11602 mntB; manganese transport system permease protein D C1M55_30455 metal ABC transporter ATP-binding protein K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5] D C1M55_13870 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D C1M55_13860 energy-coupling factor transporter transmembrane protein EcfT K16783 bioN; biotin transport system permease protein D C1M55_13865 ABC transporter ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D C1M55_13580 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D C1M55_01305 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein D C1M55_01300 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D C1M55_00530 ABC transporter permease K09813 hrtB; hemin transport system permease protein D C1M55_25990 ABC transporter permease K09813 hrtB; hemin transport system permease protein D C1M55_25985 ABC transporter ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-] D C1M55_00535 ABC transporter ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-] D C1M55_11455 ABC transporter permease K09811 ftsX; cell division transport system permease protein D C1M55_11450 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D C1M55_21840 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D C1M55_27085 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D C1M55_21835 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D C1M55_27080 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D C1M55_01840 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D C1M55_07280 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D C1M55_01845 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D C1M55_07275 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D C1M55_24535 cydC; thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D C1M55_24540 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D C1M55_26955 ABC transporter ATP-binding protein K18230 tylC; macrolide transport system ATP-binding/permease protein D C1M55_13480 ABC transporter ATP-binding protein/permease K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:rqi02060] D C1M55_14000 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D C1M55_19650 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D C1M55_13980 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D C1M55_19655 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D C1M55_19670 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D C1M55_19660 PTS N-acetylglucosamine transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D C1M55_13985 PTS lactose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D C1M55_13990 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:rqi03070] D C1M55_14585 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D C1M55_14590 protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D C1M55_08685 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D C1M55_15115 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D C1M55_09475 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D C1M55_14580 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D C1M55_23890 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D C1M55_30755 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D C1M55_11050 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D C1M55_12715 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D C1M55_12735 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D C1M55_06375 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D C1M55_15790 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D C1M55_20510 tatB; twin-arginine translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB D C1M55_15785 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:rqi02020] D C1M55_09995 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D C1M55_25530 alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D C1M55_08210 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D C1M55_08215 DNA-binding response regulator K07776 regX3; two-component system, OmpR family, response regulator RegX3 D C1M55_24485 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D C1M55_20515 PDZ domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107] D C1M55_18360 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D C1M55_18355 DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D C1M55_18375 potassium-transporting ATPase subunit KdpA K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D C1M55_18370 kdpB; K(+)-transporting ATPase subunit B K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D C1M55_18365 potassium-transporting ATPase subunit C K01548 kdpC; potassium-transporting ATPase KdpC subunit D C1M55_17235 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D C1M55_07030 tripartite tricarboxylate transporter substrate binding protein K07795 tctC; putative tricarboxylic transport membrane protein D C1M55_15200 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D C1M55_22150 sensor histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] D C1M55_15735 HAMP domain-containing protein K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] D C1M55_22155 DNA-binding response regulator K07669 mprA; two-component system, OmpR family, response regulator MprA D C1M55_22145 PDZ domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D C1M55_09790 HAMP domain-containing protein K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D C1M55_11030 sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D C1M55_11025 DNA-binding response regulator K07670 mtrA; two-component system, OmpR family, response regulator MtrA D C1M55_00005 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D C1M55_02450 sensor histidine kinase K07655 prrB; two-component system, OmpR family, sensor histidine kinase PrrB [EC:2.7.13.3] D C1M55_23065 sensor histidine kinase K07655 prrB; two-component system, OmpR family, sensor histidine kinase PrrB [EC:2.7.13.3] D C1M55_02455 DNA-binding response regulator K07671 prrA; two-component system, OmpR family, response regulator PrrA D C1M55_23060 DNA-binding response regulator K07671 prrA; two-component system, OmpR family, response regulator PrrA D C1M55_30460 metal ABC transporter substrate-binding protein K11601 mntC; manganese transport system substrate-binding protein D C1M55_30455 metal ABC transporter ATP-binding protein K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5] D C1M55_30450 metal ABC transporter permease K11602 mntB; manganese transport system permease protein D C1M55_16120 DUF2156 domain-containing protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D C1M55_15490 DUF2156 domain-containing protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D C1M55_09805 peptidase M15 K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D C1M55_26165 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D C1M55_09280 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D C1M55_12930 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D C1M55_20480 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D C1M55_10685 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D C1M55_20395 NADP-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D C1M55_06890 DNA-binding response regulator K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D C1M55_23715 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D C1M55_30375 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D C1M55_23720 DNA-binding response regulator K07693 desR; two-component system, NarL family, response regulator DesR D C1M55_30370 DNA-binding response regulator K07693 desR; two-component system, NarL family, response regulator DesR D C1M55_22490 histidine kinase K07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3] D C1M55_06135 DNA-binding response regulator K07695 devR; two-component system, NarL family, response regulator DevR D C1M55_22495 DNA-binding response regulator K07695 devR; two-component system, NarL family, response regulator DevR D C1M55_02815 ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D C1M55_02820 secretion protein F K12510 tadB; tight adherence protein B D C1M55_12730 [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D C1M55_12725 transcriptional regulator K04751 glnB; nitrogen regulatory protein P-II 1 D C1M55_25810 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_17840 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_17965 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_19045 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_30570 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_25770 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26145 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_01065 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_06015 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02155 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04430 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04600 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04625 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_05530 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26675 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_27635 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22640 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_19310 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21060 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21905 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22635 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_28955 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_09240 glutamate/aspartate:proton symporter GltP K11103 dctA; aerobic C4-dicarboxylate transport protein D C1M55_05140 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein D C1M55_13415 hydrogenase expression protein HypE K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] D C1M55_13420 hydrogenase K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D C1M55_02695 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D C1M55_14290 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D C1M55_24550 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D C1M55_24545 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D C1M55_06725 low molecular weight phosphatase family protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D C1M55_18040 low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:rqi02024] D C1M55_16705 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D C1M55_17615 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D C1M55_23645 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D C1M55_18355 DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D C1M55_17420 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D C1M55_07910 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D C1M55_06860 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D C1M55_22580 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D C1M55_16620 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D C1M55_06865 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_22590 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_07915 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_08555 ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_16600 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_06870 branched-chain amino acid ABC transporter substrate-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_16605 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D C1M55_07920 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D C1M55_22585 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D C1M55_08560 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_22600 livG; ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_16610 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_07925 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_07930 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_06875 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_08565 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_16615 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_22595 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_19030 peptidase K20276 bapA; large repetitive protein D C1M55_30400 DUF11 domain-containing protein K20276 bapA; large repetitive protein D C1M55_26200 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_00450 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_00645 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_02120 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_27720 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_17655 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_19970 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_20225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_27695 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_28425 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_02695 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D C1M55_15050 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D C1M55_02780 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D C1M55_02785 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D C1M55_02790 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D C1M55_02795 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D C1M55_25210 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_25215 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_00305 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_00325 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_06160 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_14595 peptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_07395 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_03190 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_03245 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_04685 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_05010 transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_05060 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_08395 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_16180 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_23735 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_24040 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_02940 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_03010 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_25220 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_00330 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_07400 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_04680 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_05005 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_16185 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_03005 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_02935 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_25225 peptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_04675 ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_00335 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D C1M55_07405 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D C1M55_02930 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D C1M55_03000 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D C1M55_16190 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D C1M55_05000 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D C1M55_02925 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_00340 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_07410 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_04995 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_16170 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_02995 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_00345 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D C1M55_04670 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D C1M55_23890 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D C1M55_30755 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D C1M55_08685 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D C1M55_15115 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D C1M55_09475 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D C1M55_14580 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D C1M55_11050 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D C1M55_12715 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D C1M55_12735 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D C1M55_29055 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] D C1M55_20285 CoA synthetase C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis D C1M55_26595 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein C 02040 Flagellar assembly D C1M55_14195 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D C1M55_21535 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:rqi04980] D C1M55_19365 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D C1M55_15410 methylmalonyl Co-A mutase-associated GTPase MeaB K07588 MMAA; GTPase [EC:3.6.5.-] D C1M55_15400 mutA; methylmalonyl-CoA mutase small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D C1M55_15405 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D C1M55_15895 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:rqi01501] D C1M55_05510 beta-glucosidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D C1M55_02780 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D C1M55_02785 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D C1M55_02790 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D C1M55_02795 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D C1M55_15480 M56 family peptidase K02172 blaR1; bla regulator protein blaR1 D C1M55_15485 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D C1M55_04960 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D C1M55_17525 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:rqi01502] D C1M55_12610 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D C1M55_09635 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D C1M55_17515 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D C1M55_17510 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D C1M55_19600 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D C1M55_17495 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D C1M55_09805 peptidase M15 K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rqi01503] D C1M55_02200 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D C1M55_30715 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D C1M55_20515 PDZ domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107] D C1M55_00090 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D C1M55_16120 DUF2156 domain-containing protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D C1M55_15490 DUF2156 domain-containing protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:rqi01000] C 01001 Protein kinases [BR:rqi01001] D C1M55_07475 serine/threonine protein kinase K14949 pknG; serine/threonine-protein kinase PknG [EC:2.7.11.1] D C1M55_18240 serine/threonine protein kinase K22893 pknH; serine/threonine kinase PknH [EC:2.7.11.1] D C1M55_00150 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D C1M55_00155 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D C1M55_17605 PASTA domain-containing protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D C1M55_00220 protein kinase family protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D C1M55_09825 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D C1M55_06445 anti-sigma factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D C1M55_08000 anti-sigma factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D C1M55_06660 protein tyrosine kinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3] D C1M55_06720 protein tyrosine kinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3] D C1M55_21580 hypothetical protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3] D C1M55_21585 hypothetical protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3] D C1M55_08210 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D C1M55_18360 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D C1M55_22150 sensor histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] D C1M55_15735 HAMP domain-containing protein K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] D C1M55_09790 HAMP domain-containing protein K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D C1M55_11030 sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D C1M55_02450 sensor histidine kinase K07655 prrB; two-component system, OmpR family, sensor histidine kinase PrrB [EC:2.7.13.3] D C1M55_23065 sensor histidine kinase K07655 prrB; two-component system, OmpR family, sensor histidine kinase PrrB [EC:2.7.13.3] D C1M55_04910 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D C1M55_23715 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D C1M55_30375 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D C1M55_22490 histidine kinase K07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3] D C1M55_20445 ATP-binding protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D C1M55_07025 GHKL domain-containing protein K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D C1M55_22790 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D C1M55_11130 ATPase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:rqi01009] D C1M55_11015 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D C1M55_25335 molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D C1M55_00170 serine/threonine protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D C1M55_12310 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:rqi01002] D C1M55_17405 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D C1M55_14890 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D C1M55_29335 hypothetical protein K02506 hofD; leader peptidase HopD [EC:3.4.23.43] D C1M55_13445 peptidase M52 K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D C1M55_09755 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D C1M55_30560 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K07010 K07010; putative glutamine amidotransferase D C1M55_17670 peptidoglycan endopeptidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D C1M55_10440 hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D C1M55_23900 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D C1M55_22710 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D C1M55_17675 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D C1M55_15310 invasin K21473 ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-] D C1M55_31450 peptidase M23 K21473 ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-] D C1M55_24600 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D C1M55_00265 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D C1M55_16665 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D C1M55_28925 glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D C1M55_09620 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D C1M55_17740 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D C1M55_19035 class E sortase K07284 srtA; sortase A [EC:3.4.22.70] D C1M55_24610 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein D C1M55_31015 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein D C1M55_10025 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein D C1M55_20750 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein D C1M55_16135 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D C1M55_18855 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D C1M55_25115 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D C1M55_09805 peptidase M15 K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D C1M55_17800 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D C1M55_25860 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D C1M55_07785 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D C1M55_25240 glutamate carboxypeptidase K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D C1M55_04940 glutamate carboxypeptidase K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D C1M55_26615 hydrolase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D C1M55_20590 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D C1M55_19180 dipeptidase K23980 tpdA; cysteinylglycine-S-conjugate dipeptidase [EC:3.4.13.23] D C1M55_01170 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D C1M55_09485 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D C1M55_13135 map; type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D C1M55_03505 ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D C1M55_08640 zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D C1M55_04925 aminopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-] D C1M55_15480 M56 family peptidase K02172 blaR1; bla regulator protein blaR1 D C1M55_15595 PrsW family intramembrane metalloprotease K24131 prsW; protease PrsW [EC:3.4.-.-] D C1M55_20515 PDZ domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107] D C1M55_22145 PDZ domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-] D C1M55_06780 protease K18546 sprC; streptogrisin C [EC:3.4.21.-] D C1M55_09555 mycP; type VII secretion-associated serine protease mycosin K14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-] D C1M55_07770 S9 family peptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D C1M55_05125 S9 family peptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D C1M55_10160 penicillin-binding protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D C1M55_27490 peptidase S12 K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] D C1M55_03455 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D C1M55_18800 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D C1M55_18805 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D C1M55_30255 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D C1M55_30260 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D C1M55_11330 PDZ domain-containing protein K07177 K07177; Lon-like protease D C1M55_14015 transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D C1M55_27215 transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D C1M55_12815 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D C1M55_27900 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D C1M55_25005 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D C1M55_07345 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D C1M55_07860 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D C1M55_07135 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit K01259 pip; proline iminopeptidase [EC:3.4.11.5] D C1M55_17985 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D C1M55_28895 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D C1M55_17855 alpha/beta hydrolase K27108 ephA_B; epoxide hydrolase A/B [EC:3.3.2.-] D C1M55_30535 alpha/beta hydrolase K27108 ephA_B; epoxide hydrolase A/B [EC:3.3.2.-] D C1M55_26770 alpha/beta hydrolase K01054 MGLL; acylglycerol lipase [EC:3.1.1.23] D C1M55_19825 peptidase K05995 pepE; dipeptidase E [EC:3.4.13.21] D C1M55_10540 HK97 family phage prohead protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease D C1M55_15815 prcA; proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D C1M55_15820 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D C1M55_15645 TldD/PmbA family protein K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:rqi01003] D C1M55_18260 polyprenol monophosphomannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D C1M55_22015 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] D C1M55_14480 glycosyltransferase family 1 protein K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345] D C1M55_17660 glycosyltransferase family 1 protein K13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346] D C1M55_08620 glycosyltransferase family 1 protein K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-] D C1M55_12370 glycosyltransferase family 1 protein K16150 K16150; glycogen synthase [EC:2.4.1.11] D C1M55_20540 glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D C1M55_06700 glycosyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D C1M55_19420 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D C1M55_14975 DUF2029 domain-containing protein K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-] D C1M55_02070 DUF2029 domain-containing protein K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-] D C1M55_08980 DUF2029 domain-containing protein K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-] D C1M55_31205 glycosyltransferase K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-] D C1M55_17590 alpha-(1->6)-mannopyranosyltransferase A K14337 mptA; alpha-1,6-mannosyltransferase [EC:2.4.1.-] D C1M55_15220 hypothetical protein K14339 mptB; alpha-1,6-mannosyltransferase [EC:2.4.1.-] D C1M55_01155 arabinosyltransferase K11386 embB; arabinosyltransferase B [EC:2.4.2.-] D C1M55_01160 arabinosyltransferase K11387 embC; arabinosyltransferase C [EC:2.4.2.-] D C1M55_17005 arabinosyltransferase K11387 embC; arabinosyltransferase C [EC:2.4.2.-] D C1M55_01195 arabinofuranosyltransferase K13686 aftA; galactan 5-O-arabinofuranosyltransferase [EC:2.4.2.46] D C1M55_01100 hypothetical protein K13687 aftB; arabinofuranosyltransferase [EC:2.4.2.-] D C1M55_14385 DUF2029 domain-containing protein K16647 aftC; arabinofuranan 3-O-arabinosyltransferase [EC:2.4.2.47] D C1M55_05490 DUF3367 domain-containing protein K16648 aftD; arabinofuranan 3-O-arabinosyltransferase [EC:2.4.2.-] D C1M55_01295 glycosyltransferase family 2 protein K16649 glft1; rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,3/1,4-galactofuranosyltransferase [EC:2.4.1.287] D C1M55_01280 glycosyltransferase family 2 protein K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288] D C1M55_01085 glycosyltransferase family 2 protein K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288] D C1M55_10925 glycosyltransferase family 2 protein K16870 wbbL; N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase [EC:2.4.1.289] D C1M55_06485 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D C1M55_04810 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D C1M55_20565 glucosyl-3-phosphoglycerate synthase K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266] C 01005 Lipopolysaccharide biosynthesis proteins [BR:rqi01005] D C1M55_12785 mannosyltransferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] D C1M55_01265 mannosyltransferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] D C1M55_19420 undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rqi01011] D C1M55_19360 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D C1M55_08115 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D C1M55_17490 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D C1M55_17505 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D C1M55_17520 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D C1M55_12610 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D C1M55_09635 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D C1M55_08965 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D C1M55_17510 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D C1M55_19600 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D C1M55_17495 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D C1M55_15965 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D C1M55_05610 virulence factor MviN K03980 murJ; putative peptidoglycan lipid II flippase D C1M55_30680 peptidoglycan biosynthesis protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D C1M55_17525 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D C1M55_00160 penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A D C1M55_10160 penicillin-binding protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D C1M55_03455 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D C1M55_27490 peptidase S12 K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] D C1M55_09805 peptidase M15 K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D C1M55_17670 peptidoglycan endopeptidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D C1M55_10440 hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D C1M55_23900 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D C1M55_22710 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D C1M55_17675 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D C1M55_15310 invasin K21473 ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-] D C1M55_31450 peptidase M23 K21473 ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-] D C1M55_19035 class E sortase K07284 srtA; sortase A [EC:3.4.22.70] D C1M55_14880 endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D C1M55_02200 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D C1M55_30715 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:rqi01004] D C1M55_19195 type I polyketide synthase K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-] D C1M55_18095 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D C1M55_26270 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_04420 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_05525 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_27485 KR domain-containing protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_27655 3-oxoacyl-ACP reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_24665 KR domain-containing protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_18330 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_18960 short chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_25060 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_26415 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_24010 SDR family NAD(P)-dependent oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_28485 KR domain-containing protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D C1M55_04720 SGNH/GDSL hydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D C1M55_14510 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D C1M55_14520 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D C1M55_22655 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D C1M55_16650 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D C1M55_05605 ketoacyl-ACP synthase III K11608 mtfabH; mycobacterial beta-ketoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.301] D C1M55_18105 beta-ketoacyl-[acyl-carrier-protein] synthase II K11609 kasA; meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I [EC:2.3.1.293] D C1M55_15330 beta-ketoacyl-ACP reductase K11610 mabA; beta-ketoacyl ACP reductase [EC:1.1.1.100] D C1M55_15335 enoyl-[acyl-carrier-protein] reductase FabI K11611 inhA; meromycolic acid enoyl-[acyl-carrier-protein] reductase [EC:1.3.1.118] D C1M55_24415 acyl-ACP desaturase K03921 FAB2; acyl-[acyl-carrier-protein] desaturase [EC:1.14.19.2 1.14.19.11 1.14.19.26] D C1M55_19070 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D C1M55_11085 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D C1M55_11080 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D C1M55_25675 acyl-CoA desaturase K22769 desA3; NADPH-dependent stearoyl-CoA 9-desaturase [EC:1.14.19.-] D C1M55_01135 polyketide synthase K12437 pks13; polyketide synthase 13 D C1M55_02775 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_12980 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_29340 acyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D C1M55_26200 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_00450 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_00645 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_02120 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_27720 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_17655 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_19970 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_20225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_27695 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_28425 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_16365 acyl-CoA synthetase K03822 K03822; putative long chain acyl-CoA synthase [EC:6.2.1.-] D C1M55_03490 acyl-CoA synthetase K12429 fadD36; fatty acid CoA ligase FadD36 D C1M55_20625 acyl-CoA synthetase K12429 fadD36; fatty acid CoA ligase FadD36 D C1M55_01130 fatty-acid--CoA ligase K12428 fadD32; fatty acid CoA ligase FadD32 D C1M55_26280 acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D C1M55_09195 AMP-binding protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D C1M55_03615 long-chain fatty acid--CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D C1M55_04735 acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D C1M55_07015 acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D C1M55_21800 long-chain fatty acid--CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D C1M55_20575 long-chain-acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D C1M55_28555 long-chain fatty acid--CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D C1M55_23585 long-chain fatty acid--CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D C1M55_08245 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D C1M55_07100 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D C1M55_17625 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:rqi01008] D C1M55_02140 KR domain-containing protein K15314 sgcE; enediyne polyketide synthase D C1M55_04865 MbtH family protein K05375 mbtH; MbtH protein D C1M55_13635 2,3-dihydro-2,3-dihydroxybenzoate synthetase K01252 entB; bifunctional isochorismate lyase / aryl carrier protein [EC:3.3.2.1 6.3.2.14] D C1M55_13630 entE; 2,3-dihydroxybenzoate-AMP ligase K02363 entE; 2,3-dihydroxybenzoate---[aryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.71] D C1M55_27600 aspartate/glutamate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13] C 01006 Prenyltransferases [BR:rqi01006] D C1M55_17580 geranylgeranyl pyrophosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D C1M55_20990 isoprenyl transferase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68] D C1M55_18305 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D C1M55_17595 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D C1M55_13950 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D C1M55_08505 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D C1M55_15185 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D C1M55_01095 decaprenyl-phosphate phosphoribosyltransferase K14136 K14136; decaprenyl-phosphate phosphoribosyltransferase [EC:2.4.2.45] C 01007 Amino acid related enzymes [BR:rqi01007] D C1M55_01995 tRNA glutamyl-Q(34) synthetase GluQRS K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D C1M55_12540 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D C1M55_16335 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D C1M55_10150 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D C1M55_03825 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D C1M55_19475 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D C1M55_22000 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D C1M55_17440 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D C1M55_18730 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D C1M55_30590 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D C1M55_00365 lysS; bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D C1M55_03585 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D C1M55_14845 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D C1M55_14625 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D C1M55_18285 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D C1M55_01010 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D C1M55_13240 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D C1M55_14460 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D C1M55_04180 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D C1M55_14870 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D C1M55_16440 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D C1M55_16435 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D C1M55_01535 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D C1M55_05195 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D C1M55_06745 pyridoxal phosphate-dependent aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D C1M55_23515 putative succinyldiaminopimelate transaminase DapC K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D C1M55_25905 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_01565 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_16990 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_18030 threonine-phosphate decarboxylase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D C1M55_17250 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D C1M55_06190 aminotransferase class I and II K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D C1M55_10735 L-lysine 6-transaminase K03918 lat; L-lysine 6-transaminase [EC:2.6.1.36] D C1M55_16390 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D C1M55_03290 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_28045 gabT; 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D C1M55_18665 ectB; diaminobutyrate--2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D C1M55_14045 aspartate aminotransferase family protein K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D C1M55_30115 aspartate aminotransferase family protein K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113] D C1M55_17255 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D C1M55_08425 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D C1M55_17790 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D C1M55_23235 phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D C1M55_12790 dTDP-4-amino-4,6-dideoxygalactose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] C 00199 Cytochrome P450 [BR:rqi00199] D C1M55_16810 cytochrome P450 K05917 CYP51; sterol 14alpha-demethylase [EC:1.14.14.154 1.14.15.36] D C1M55_07640 cytochrome P450 K15981 CYP125A; cholest-4-en-3-one 26-monooxygenase [EC:1.14.15.29] D C1M55_04605 cytochrome P450 K15981 CYP125A; cholest-4-en-3-one 26-monooxygenase [EC:1.14.15.29] D C1M55_16785 cytochrome P450 K15981 CYP125A; cholest-4-en-3-one 26-monooxygenase [EC:1.14.15.29] D C1M55_05645 cytochrome P450 K21119 CYP130; cytochrome P450 family 130 D C1M55_04210 cytochrome P450 K16046 CYP142; cholest-4-en-3-one 26-monooxygenase [EC:1.14.15.28] C 00194 Photosynthesis proteins [BR:rqi00194] D C1M55_27060 copper-binding protein K02638 petE; plastocyanin D C1M55_27090 copper-binding protein K02638 petE; plastocyanin D C1M55_19375 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D C1M55_19380 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D C1M55_19385 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D C1M55_19390 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D C1M55_19395 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D C1M55_19400 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D C1M55_19405 atpE; ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D C1M55_19410 atpB; ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:rqi03000] D C1M55_01645 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_19585 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_31255 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_30305 AraC family transcriptional regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB D C1M55_26635 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D C1M55_14075 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D C1M55_28430 transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D C1M55_24410 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon D C1M55_26215 LysR family transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D C1M55_01495 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D C1M55_13995 DeoR/GlpR transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D C1M55_24695 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D C1M55_10300 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D C1M55_26610 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D C1M55_25870 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D C1M55_19675 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D C1M55_13015 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D C1M55_26560 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D C1M55_03500 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D C1M55_30555 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D C1M55_03045 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D C1M55_29960 PLP-dependent aminotransferase family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D C1M55_17180 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein D C1M55_26850 TetR/AcrR family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D C1M55_18415 TetR/AcrR family transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D C1M55_29540 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D C1M55_23005 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D C1M55_30645 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D C1M55_27240 TetR/AcrR family transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D C1M55_23040 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D C1M55_15290 TetR/AcrR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase D C1M55_00640 TetR/AcrR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase D C1M55_19080 TetR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D C1M55_25775 TetR/AcrR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D C1M55_03910 TetR/AcrR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D C1M55_23740 TetR/AcrR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D C1M55_24015 TetR/AcrR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D C1M55_28910 TetR/AcrR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D C1M55_07905 TetR/AcrR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D C1M55_04425 TetR/AcrR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D C1M55_18935 TetR/AcrR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D C1M55_00460 helix-turn-helix domain-containing protein K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D C1M55_02225 TetR/AcrR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D C1M55_29355 TetR/AcrR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D C1M55_29720 TetR/AcrR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D C1M55_09090 mftR; mycofactocin system transcriptional regulator K24699 mftR; TetR/AcrR family transcriptional regulator, regulator of mycofactocin system D C1M55_10730 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D C1M55_12975 helix-turn-helix transcriptional regulator K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism D C1M55_25265 DNA-binding response regulator K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism D C1M55_26440 LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D C1M55_03710 LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D C1M55_23825 helix-turn-helix transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D C1M55_28780 LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D C1M55_23745 MarR family transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D C1M55_23870 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D C1M55_22900 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D C1M55_15945 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D C1M55_02485 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D C1M55_02770 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D C1M55_05665 MerR family DNA-binding transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D C1M55_27305 MerR family DNA-binding transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D C1M55_31200 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D C1M55_27745 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D C1M55_22055 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D C1M55_06855 MerR family DNA-binding transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D C1M55_06475 MerR family DNA-binding transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D C1M55_13555 MerR family transcriptional regulator K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator D C1M55_23820 MerR family transcriptional regulator K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator D C1M55_18295 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D C1M55_06095 transcriptional repressor K22297 furA; Fur family transcriptional regulator, stress-responsive regulator D C1M55_02430 transcriptional repressor K22297 furA; Fur family transcriptional regulator, stress-responsive regulator D C1M55_30045 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D C1M55_26670 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D C1M55_27375 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D C1M55_02695 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D C1M55_27935 transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D C1M55_17335 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D C1M55_28825 ArsR family transcriptional regulator K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor D C1M55_26140 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D C1M55_18290 ArsR family transcriptional regulator K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D C1M55_25480 XRE family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D C1M55_07950 XRE family transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D C1M55_13845 XRE family transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator D C1M55_14125 metal-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor D C1M55_13370 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D C1M55_15485 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D C1M55_10845 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D C1M55_09200 Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D C1M55_08305 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D C1M55_22075 transcriptional regulator K27097 espR; ESX-1-secreted protein regulator D C1M55_31350 XRE family transcriptional regulator K27097 espR; ESX-1-secreted protein regulator D C1M55_24750 transcriptional regulator K07729 K07729; putative transcriptional regulator D C1M55_05550 transcriptional regulator K07729 K07729; putative transcriptional regulator D C1M55_22950 transcriptional regulator K07729 K07729; putative transcriptional regulator D C1M55_10955 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D C1M55_22745 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D C1M55_22540 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D C1M55_28655 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D C1M55_06455 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D C1M55_09705 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D C1M55_02620 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D C1M55_11135 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D C1M55_11310 WhiB family transcriptional regulator K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D C1M55_08350 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D C1M55_03235 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D C1M55_03285 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D C1M55_26750 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D C1M55_30135 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D C1M55_30155 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D C1M55_24130 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D C1M55_30725 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D C1M55_31090 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D C1M55_03810 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D C1M55_16380 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D C1M55_18445 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor D C1M55_26570 transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D C1M55_19850 TenA family transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D C1M55_03160 transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D C1M55_23595 hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D C1M55_07755 PspC domain-containing protein K03973 pspC; phage shock protein C D C1M55_23185 transcriptional regulator K05346 deoR; deoxyribonucleoside regulator D C1M55_18175 sugar-binding transcriptional regulator K05346 deoR; deoxyribonucleoside regulator D C1M55_14940 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D C1M55_29525 transcriptional regulator K07734 paiB; transcriptional regulator D C1M55_30625 DUF179 domain-containing protein K07735 algH; putative transcriptional regulator D C1M55_14025 transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D C1M55_17540 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:rqi03021] D C1M55_23385 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D C1M55_09515 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D C1M55_08775 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D C1M55_08780 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D C1M55_14990 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D C1M55_14195 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D C1M55_14140 RNA polymerase subunit sigma K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D C1M55_09040 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D C1M55_06515 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D C1M55_13145 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D C1M55_11115 RNA polymerase K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D C1M55_23430 RNA polymerase sigma factor SigJ K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D C1M55_09695 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D C1M55_30685 RNA polymerase sigma factor SigM K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D C1M55_09715 RNA polymerase sigma factor ShbA K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D C1M55_20105 RNA polymerase subunit sigma-70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D C1M55_20525 RNA polymerase sigma factor SigE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D C1M55_26520 RNA polymerase subunit sigma-24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D C1M55_07995 RNA polymerase sigma factor SigF K03090 sigB; RNA polymerase sigma-B factor D C1M55_13315 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D C1M55_14935 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D C1M55_08690 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D C1M55_08010 anti-sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist D C1M55_06445 anti-sigma factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D C1M55_08000 anti-sigma factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D C1M55_21020 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D C1M55_19450 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:rqi03019] D C1M55_18710 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D C1M55_12685 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D C1M55_13805 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-] D C1M55_10140 ribonuclease N K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D C1M55_19130 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D C1M55_20205 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D C1M55_18655 recombinase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D C1M55_21535 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D C1M55_13385 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D C1M55_19450 transcription termination factor Rho K03628 rho; transcription termination factor Rho D C1M55_06840 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D C1M55_29795 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D C1M55_09685 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D C1M55_07740 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D C1M55_12590 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D C1M55_07760 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D C1M55_23080 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D C1M55_30665 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D C1M55_00375 ribonuclease E inhibitor RraA K02553 rraA; regulator of ribonuclease activity A D C1M55_15080 RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ D C1M55_15780 RNA helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6] D C1M55_14030 hrpA; ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:rqi03011] D C1M55_16545 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D C1M55_12900 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D C1M55_09405 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D C1M55_09510 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D C1M55_09460 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D C1M55_29870 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D C1M55_08920 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D C1M55_09445 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D C1M55_09590 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D C1M55_09370 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D C1M55_09505 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D C1M55_08915 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D C1M55_09500 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D C1M55_09440 30S ribosomal protein S14 type Z K02954 RP-S14; small subunit ribosomal protein S14 D C1M55_22190 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D C1M55_13380 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D C1M55_12745 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D C1M55_09420 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D C1M55_22195 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D C1M55_29860 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D C1M55_09395 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D C1M55_18575 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D C1M55_08700 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D C1M55_09390 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D C1M55_09375 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D C1M55_09380 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D C1M55_09435 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D C1M55_09450 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D C1M55_29855 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D C1M55_08710 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D C1M55_08695 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D C1M55_08715 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D C1M55_09585 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D C1M55_09425 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D C1M55_09470 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D C1M55_09410 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D C1M55_09520 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D C1M55_09455 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D C1M55_12810 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D C1M55_16450 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D C1M55_18705 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D C1M55_09400 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D C1M55_09385 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D C1M55_09430 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D C1M55_18700 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D C1M55_12640 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D C1M55_22180 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D C1M55_09415 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D C1M55_09465 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D C1M55_22170 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31 D C1M55_19445 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D C1M55_12680 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D C1M55_22165 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D C1M55_08665 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D C1M55_22185 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D C1M55_30770 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D C1M55_16455 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D C1M55_09495 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D C1M55_21790 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D C1M55_02900 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D C1M55_02890 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D C1M55_02895 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:rqi03009] D C1M55_12685 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D C1M55_19130 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D C1M55_18395 GTPase Era K03595 era; GTPase D C1M55_18695 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D C1M55_13315 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D C1M55_14935 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D C1M55_08690 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D C1M55_21965 ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D C1M55_15035 methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D C1M55_21075 methyltransferase domain-containing protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D C1M55_12660 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D C1M55_18435 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D C1M55_30735 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D C1M55_17535 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D C1M55_22010 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D C1M55_16300 TlyA family rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D C1M55_20545 methyltransferase type 11 K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D C1M55_03830 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D C1M55_12940 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D C1M55_15880 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D C1M55_20835 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D C1M55_23990 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D C1M55_16245 MFS transporter K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D C1M55_17400 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D C1M55_09655 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D C1M55_22105 N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D C1M55_12755 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM D C1M55_00555 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D C1M55_00560 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D C1M55_18710 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D C1M55_14875 Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D C1M55_20205 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D C1M55_01290 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D C1M55_11090 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D C1M55_16235 ribosome biogenesis GTPase Der K03977 engA; GTPase D C1M55_13965 hflX; GTPase HflX K03665 hflX; GTPase D C1M55_19430 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D C1M55_14605 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D C1M55_13335 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A D C1M55_13310 ribosome maturation factor K09748 rimP; ribosome maturation factor RimP D C1M55_00370 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein D C1M55_18610 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein D C1M55_18405 endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor D C1M55_20840 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase D C1M55_12675 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:rqi03016] D C1M55_10140 ribonuclease N K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24] D C1M55_12830 RtcB family protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D C1M55_01995 tRNA glutamyl-Q(34) synthetase GluQRS K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D C1M55_12540 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D C1M55_13240 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D C1M55_17440 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D C1M55_30590 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D C1M55_22000 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D C1M55_19475 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D C1M55_00365 lysS; bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D C1M55_03585 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D C1M55_14845 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D C1M55_14870 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D C1M55_18285 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D C1M55_14460 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D C1M55_04180 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D C1M55_01010 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D C1M55_03825 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D C1M55_18730 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D C1M55_14625 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D C1M55_16440 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D C1M55_16435 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D C1M55_16335 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D C1M55_10150 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D C1M55_03705 HIT domain-containing protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D C1M55_05080 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D C1M55_15855 tRNA (adenine-N1)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D C1M55_05360 tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D C1M55_09525 tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D C1M55_13360 tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D C1M55_12405 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D C1M55_19430 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D C1M55_13950 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D C1M55_08360 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D C1M55_19535 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D C1M55_30765 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D C1M55_18000 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D C1M55_19235 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D C1M55_14330 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D C1M55_11110 Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D C1M55_07435 nucleoside deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D C1M55_01665 nucleoside deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D C1M55_13930 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D C1M55_12760 tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D C1M55_10070 tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D C1M55_16445 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family D C1M55_15880 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D C1M55_20835 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D C1M55_23990 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D C1M55_12410 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D C1M55_24560 folate-binding protein K06980 ygfZ; tRNA-modifying protein YgfZ D C1M55_01965 tRNA-guanine(34) transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D C1M55_03465 tilS; tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D C1M55_09650 tsaB; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D C1M55_09660 tsaD; tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D C1M55_09645 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D C1M55_13385 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:rqi03012] D C1M55_13325 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D C1M55_16460 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D C1M55_12905 elongation factor Ts K02357 tsf; elongation factor Ts D C1M55_08930 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D C1M55_08925 fusA; elongation factor G K02355 fusA; elongation factor G D C1M55_19440 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D C1M55_12915 ribosome recycling factor K02838 frr; ribosome recycling factor D C1M55_04000 putative protein N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D C1M55_06405 methyltransferase domain-containing protein K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D C1M55_19435 prmC; peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D C1M55_21795 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D C1M55_09490 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D C1M55_14930 efp; elongation factor P K02356 efp; elongation factor P D C1M55_11435 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D C1M55_21805 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:rqi03110] D C1M55_07060 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D C1M55_29815 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D C1M55_03605 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D C1M55_23770 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D C1M55_18795 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D C1M55_25335 molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D C1M55_06840 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D C1M55_29795 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D C1M55_06800 Hsp70 family protein K04044 hscA; molecular chaperone HscA D C1M55_21560 hypothetical protein K04044 hscA; molecular chaperone HscA D C1M55_09685 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D C1M55_07740 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D C1M55_06850 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D C1M55_18440 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D C1M55_29805 molecular chaperone DnaJ K05516 cbpA; curved DNA-binding protein D C1M55_06845 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D C1M55_29800 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D C1M55_06280 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D C1M55_29840 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein D C1M55_25295 RNA-binding protein S4 K04762 hslR; ribosome-associated heat shock protein Hsp15 D C1M55_09680 co-chaperone GroES K04078 groES; chaperonin GroES D C1M55_20515 PDZ domain-containing protein K04771 degP; serine protease Do [EC:3.4.21.107] D C1M55_03505 ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D C1M55_19410 atpB; ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D C1M55_05765 copper chaperone PCu(A)C K09796 pccA; periplasmic copper chaperone A D C1M55_13405 hypA; hydrogenase maturation nickel metallochaperone HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D C1M55_13410 hypB; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D C1M55_09555 mycP; type VII secretion-associated serine protease mycosin K14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-] D C1M55_00090 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D C1M55_14610 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D C1M55_14615 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D C1M55_16590 trxA; thioredoxin K03671 TXN; thioredoxin D C1M55_30710 trxA; thioredoxin K03671 TXN; thioredoxin D C1M55_29820 trxA; thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8] D C1M55_19300 co-chaperone YbbN K05838 ybbN; putative thioredoxin C 04131 Membrane trafficking [BR:rqi04131] D C1M55_18715 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D C1M55_03085 flotillin family protein K07192 FLOT; flotillin D C1M55_00815 UPF0016 domain-containing protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D C1M55_17640 arsenic-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D C1M55_15095 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D C1M55_08205 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D C1M55_16655 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D C1M55_25335 molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D C1M55_19095 MFS transporter K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system [BR:rqi04121] D C1M55_15825 ubiquitin-like protein Pup K13570 pup; prokaryotic ubiquitin-like protein Pup C 03051 Proteasome [BR:rqi03051] D C1M55_25335 molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D C1M55_15815 prcA; proteasome subunit alpha K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D C1M55_15820 prcB; proteasome subunit beta K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D C1M55_15845 arc; proteasome-associated ATPase K13527 mpa; proteasome-associated ATPase D C1M55_15805 pafA; Pup--protein ligase 2 K13571 pafA; proteasome accessory factor A [EC:6.3.1.19] D C1M55_15800 YafY family transcriptional regulator K13572 pafB; proteasome accessory factor B D C1M55_15795 YafY family transcriptional regulator K13573 pafC; proteasome accessory factor C D C1M55_15830 proteasome accessory factor PafA2 K20814 dop; Pup amidohydrolase [EC:3.5.1.119] C 03032 DNA replication proteins [BR:rqi03032] D C1M55_26120 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D C1M55_01645 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_19585 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_31255 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_12580 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D C1M55_00005 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D C1M55_29850 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D C1M55_18235 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D C1M55_19000 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C1M55_29865 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C1M55_17385 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D C1M55_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D C1M55_28305 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D C1M55_18580 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D C1M55_02865 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D C1M55_25255 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_11545 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_17680 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_02135 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D C1M55_18015 bifunctional RNase H/acid phosphatase K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73] D C1M55_12820 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D C1M55_16595 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D C1M55_12420 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D C1M55_00050 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D C1M55_00045 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D C1M55_02860 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:rqi03036] D C1M55_01645 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_19585 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_31255 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_12685 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D C1M55_03085 flotillin family protein K07192 FLOT; flotillin D C1M55_12870 Lsr2 family protein K26249 lsr2; nucleoid-associated protein Lsr2 D C1M55_03590 Lsr2 family protein K26249 lsr2; nucleoid-associated protein Lsr2 D C1M55_12580 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D C1M55_29805 molecular chaperone DnaJ K05516 cbpA; curved DNA-binding protein D C1M55_29810 MerR family transcriptional regulator K18997 cbpM; chaperone modulatory protein CbpM D C1M55_00005 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D C1M55_06470 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein D C1M55_28430 transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D C1M55_10730 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D C1M55_12710 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D C1M55_16255 segregation/condensation protein A K05896 scpA; segregation and condensation protein A D C1M55_16250 scpB; SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B D C1M55_11450 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D C1M55_17525 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D C1M55_13815 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D C1M55_17485 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D C1M55_17500 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D C1M55_24020 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D C1M55_11455 ABC transporter permease K09811 ftsX; cell division transport system permease protein D C1M55_17480 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D C1M55_14400 cell division protein ZapE K06916 zapE; cell division protein ZapE D C1M55_04015 cell division protein ZapE K06916 zapE; cell division protein ZapE D C1M55_02200 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D C1M55_30715 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D C1M55_17465 cell division protein SepF K09772 sepF; cell division inhibitor SepF D C1M55_11160 ParA family protein K03496 parA; chromosome partitioning protein D C1M55_16260 ParA family protein K03496 parA; chromosome partitioning protein D C1M55_30730 ParA family protein K03496 parA; chromosome partitioning protein D C1M55_30860 ParA family protein K03496 parA; chromosome partitioning protein D C1M55_31320 ATPase K03496 parA; chromosome partitioning protein D C1M55_24130 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D C1M55_30725 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D C1M55_31090 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D C1M55_30735 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D C1M55_12885 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D C1M55_16265 xerD; site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D C1M55_24350 integrase K04763 xerD; integrase/recombinase XerD D C1M55_20505 MRP family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D C1M55_14725 cell filamentation protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D C1M55_31060 cell filamentation protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D C1M55_15090 whiA; DNA-binding protein WhiA K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:rqi03400] D C1M55_26395 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D C1M55_26405 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D C1M55_23035 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D C1M55_12630 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D C1M55_16340 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D C1M55_03725 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D C1M55_02705 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D C1M55_23385 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D C1M55_07490 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C1M55_20695 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C1M55_07615 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C1M55_25580 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C1M55_06105 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C1M55_04470 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C1M55_29035 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C1M55_17145 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D C1M55_14225 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D C1M55_27265 alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] D C1M55_20790 mismatch-specific DNA-glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] D C1M55_26390 DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D C1M55_20555 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D C1M55_12690 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D C1M55_22450 Fpg/Nei family DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D C1M55_10675 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D C1M55_18830 Fpg/Nei family DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] D C1M55_07545 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D C1M55_10135 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D C1M55_12420 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D C1M55_16595 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D C1M55_16485 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A D C1M55_16525 excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B D C1M55_15075 excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C D C1M55_11280 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D C1M55_11305 ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D C1M55_22325 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D C1M55_08775 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D C1M55_08780 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D C1M55_09515 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D C1M55_14990 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D C1M55_21650 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D C1M55_20900 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D C1M55_20905 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D C1M55_17385 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D C1M55_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D C1M55_28305 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D C1M55_18580 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D C1M55_02865 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D C1M55_25255 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_11545 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_17680 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D C1M55_02135 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D C1M55_19000 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C1M55_29865 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C1M55_01635 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] D C1M55_04260 AAA family ATPase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D C1M55_04255 recC; exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D C1M55_04265 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D C1M55_13900 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D C1M55_14570 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA D C1M55_14575 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D C1M55_14565 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D C1M55_11620 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] D C1M55_11990 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] D C1M55_15005 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D C1M55_20875 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 D C1M55_20880 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D C1M55_03800 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D C1M55_00020 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D C1M55_12650 DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D C1M55_18310 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D C1M55_02210 recombination protein RecR K06187 recR; recombination protein RecR D C1M55_16290 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D C1M55_19125 DUF853 domain-containing protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D C1M55_15265 Ku protein K10979 ku; DNA end-binding protein Ku D C1M55_22740 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D C1M55_00050 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D C1M55_00045 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D C1M55_02860 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D C1M55_12580 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D C1M55_11540 recombinase K07455 recT; recombination protein RecT D C1M55_18655 recombinase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D C1M55_18340 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D C1M55_17430 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D C1M55_14015 transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D C1M55_27215 transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D C1M55_09835 DNA polymerase Y family protein K14161 imuB; protein ImuB D C1M55_10000 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D C1M55_21475 hypothetical protein K14623 dinD; DNA-damage-inducible protein D D C1M55_13905 recombination regulator RecX K03565 recX; regulatory protein D C1M55_19275 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D C1M55_10680 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D C1M55_12585 NUDIX hydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D C1M55_16270 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D C1M55_12270 class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D C1M55_09860 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D C1M55_12285 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D C1M55_13340 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:rqi03029] D C1M55_13325 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D C1M55_16460 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D C1M55_12905 elongation factor Ts K02357 tsf; elongation factor Ts D C1M55_08930 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D C1M55_08925 fusA; elongation factor G K02355 fusA; elongation factor G D C1M55_18395 GTPase Era K03595 era; GTPase D C1M55_16335 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D C1M55_30590 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D C1M55_14845 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D C1M55_18285 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D C1M55_19475 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D C1M55_12440 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D C1M55_20970 amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D C1M55_12470 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D C1M55_12435 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D C1M55_19000 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C1M55_29865 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D C1M55_06840 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D C1M55_29795 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D C1M55_06845 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D C1M55_29800 grpE; nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D C1M55_09685 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D C1M55_07740 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D C1M55_09680 co-chaperone GroES K04078 groES; chaperonin GroES D C1M55_06850 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D C1M55_18440 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D C1M55_12405 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D C1M55_20505 MRP family ATP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D C1M55_15185 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D C1M55_15200 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D C1M55_23890 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D C1M55_30755 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D C1M55_25335 molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:rqi02000] D C1M55_21840 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D C1M55_27085 ABC transporter ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D C1M55_21835 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D C1M55_27080 ABC transporter ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D C1M55_01840 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D C1M55_07280 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D C1M55_01845 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D C1M55_07275 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D C1M55_18990 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D C1M55_20340 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D C1M55_28940 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D C1M55_28945 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D C1M55_24535 cydC; thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D C1M55_24540 cydD; thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D C1M55_26955 ABC transporter ATP-binding protein K18230 tylC; macrolide transport system ATP-binding/permease protein D C1M55_13480 ABC transporter ATP-binding protein/permease K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein D C1M55_21920 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D C1M55_21890 ABC transporter ATP-binding protein K02021 ABC.MR; putative ABC transport system ATP-binding protein D C1M55_03840 ABC transporter ATP-binding protein K02021 ABC.MR; putative ABC transport system ATP-binding protein D C1M55_18520 sulfate ABC transporter substrate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D C1M55_18515 cysT; sulfate ABC transporter permease subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D C1M55_18510 cysW; sulfate ABC transporter permease subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D C1M55_18505 sulfate ABC transporter ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D C1M55_23500 modA; molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D C1M55_23495 modB; molybdate ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D C1M55_23490 molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D C1M55_24765 aliphatic sulfonate ABC transporter substrate-binding protein K15551 tauA; taurine transport system substrate-binding protein D C1M55_24770 ABC transporter permease K15552 tauC; taurine transport system permease protein D C1M55_24760 ABC transporter ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D C1M55_29990 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D C1M55_30025 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D C1M55_29995 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D C1M55_30000 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D C1M55_12985 ABC transporter permease K11082 phnV; 2-aminoethylphosphonate transport system permease protein D C1M55_12990 2-aminoethylphosphonate ABC transporter permease subunit K11083 phnU; 2-aminoethylphosphonate transport system permease protein D C1M55_12995 ABC transporter ATP-binding protein K11084 phnT; 2-aminoethylphosphonate transport system ATP-binding protein D C1M55_24925 glycine/betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D C1M55_25945 glycine/betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D C1M55_20370 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D C1M55_20375 glycine/betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D C1M55_24910 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D C1M55_24920 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D C1M55_25955 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D C1M55_25950 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D C1M55_20385 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D C1M55_20390 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D C1M55_24915 ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D C1M55_25960 glycine/betaine ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D C1M55_20380 proline/glycine betaine ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D C1M55_01900 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D C1M55_01955 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D C1M55_29685 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D C1M55_30050 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D C1M55_19855 ABC transporter permease K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D C1M55_11370 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D C1M55_23415 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D C1M55_29675 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D C1M55_19860 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D C1M55_11375 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D C1M55_01905 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D C1M55_04250 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D C1M55_23420 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D C1M55_29680 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D C1M55_30065 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D C1M55_19865 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D C1M55_18155 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D C1M55_20455 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D C1M55_30235 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D C1M55_30230 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D C1M55_20470 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D C1M55_30225 sugar ABC transporter permease K10237 thuF; trehalose/maltose transport system permease protein D C1M55_20465 sugar ABC transporter permease K10237 thuF; trehalose/maltose transport system permease protein D C1M55_20460 carbohydrate ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D C1M55_30220 carbohydrate ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein D C1M55_26595 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D C1M55_26585 ABC transporter permease K10440 rbsC; ribose transport system permease protein D C1M55_26590 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D C1M55_25130 ABC transporter substrate-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D C1M55_25140 sugar ABC transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D C1M55_25135 carbohydrate ABC transporter permease K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D C1M55_25125 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D C1M55_18170 sugar ABC transporter substrate-binding protein K10227 smoE; polyol transport system substrate-binding protein D C1M55_18165 sugar ABC transporter permease K10228 smoF; polyol transport system permease protein D C1M55_18160 carbohydrate ABC transporter permease K10229 smoG; polyol transport system permease protein D C1M55_24855 ABC transporter permease K02069 STAR2; UDP-glucose/iron transport system permease protein D C1M55_03735 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_03740 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_03750 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_03755 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04490 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04495 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04505 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04510 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04770 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04775 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04780 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04785 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04790 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04795 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_08740 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_08745 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_08755 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_08760 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_23940 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_16745 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_16750 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_16755 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_16760 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_16765 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_16770 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_03745 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_03760 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04500 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_04515 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_08735 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_08750 MCE family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D C1M55_03765 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_03770 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_04520 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_04525 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_04760 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_04765 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_08725 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_08730 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_16775 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_16780 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D C1M55_08720 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D C1M55_03730 hypothetical protein K18481 mas; Mce-associated membrane protein D C1M55_04485 mce associated protein mas1a K18481 mas; Mce-associated membrane protein D C1M55_04800 hypothetical protein K18481 mas; Mce-associated membrane protein D C1M55_04805 twin-arginine translocation pathway signal K18481 mas; Mce-associated membrane protein D C1M55_08765 hypothetical protein K18481 mas; Mce-associated membrane protein D C1M55_08770 hypothetical protein K18481 mas; Mce-associated membrane protein D C1M55_16735 hypothetical protein K18481 mas; Mce-associated membrane protein D C1M55_16740 hypothetical protein K18481 mas; Mce-associated membrane protein D C1M55_10265 sugar ABC transporter substrate-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D C1M55_10270 ABC transporter permease K02057 ABC.SS.P; simple sugar transport system permease protein D C1M55_10275 sugar ABC transporter ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D C1M55_24485 pstS; phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D C1M55_24480 pstC; phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D C1M55_24475 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D C1M55_24470 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D C1M55_21980 glutamine ABC transporter permease K10036 glnH; glutamine transport system substrate-binding protein D C1M55_21985 amino acid ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D C1M55_13920 glutamate-binding protein K10005 gluB; glutamate transport system substrate-binding protein D C1M55_13915 amino acid ABC transporter permease K10006 gluC; glutamate transport system permease protein D C1M55_13910 amino acid ABC transporter permease K10007 gluD; glutamate transport system permease protein D C1M55_13925 amino acid ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1] D C1M55_07910 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D C1M55_06860 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D C1M55_22580 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D C1M55_16620 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D C1M55_06865 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_22590 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_07915 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_08555 ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_16600 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D C1M55_06870 branched-chain amino acid ABC transporter substrate-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_16605 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D C1M55_07920 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D C1M55_22585 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D C1M55_08560 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_22600 livG; ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_16610 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_07925 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D C1M55_07930 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_06875 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_08565 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_16615 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_22595 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D C1M55_25660 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D C1M55_25670 ABC transporter permease K02072 metI; D-methionine transport system permease protein D C1M55_25665 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D C1M55_07900 urtA; urea ABC transporter substrate-binding protein K11959 urtA; urea transport system substrate-binding protein D C1M55_02765 hypothetical protein K11959 urtA; urea transport system substrate-binding protein D C1M55_30320 nitrile hydratase K11959 urtA; urea transport system substrate-binding protein D C1M55_07895 urtB; urea ABC transporter permease subunit UrtB K11960 urtB; urea transport system permease protein D C1M55_07890 urtC; urea ABC transporter permease subunit UrtC K11961 urtC; urea transport system permease protein D C1M55_07885 urtD; urea ABC transporter ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein D C1M55_07880 urtE; urea ABC transporter ATP-binding subunit UrtE K11963 urtE; urea transport system ATP-binding protein D C1M55_06155 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D C1M55_07380 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D C1M55_07480 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D C1M55_22750 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D C1M55_16565 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D C1M55_07370 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D C1M55_16560 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D C1M55_07375 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D C1M55_16555 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D C1M55_30355 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D C1M55_02780 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D C1M55_02785 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein D C1M55_02790 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D C1M55_02795 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D C1M55_25210 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_25215 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_00305 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_00325 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_06160 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_14595 peptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_07395 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_03190 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_03245 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_04685 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_05010 transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_05060 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_08395 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_16180 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_23735 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_24040 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_02940 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_03010 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D C1M55_25220 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_00330 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_07400 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_04680 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_05005 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_16185 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_03005 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_02935 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D C1M55_25225 peptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_04675 ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_00335 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D C1M55_07405 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D C1M55_02930 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D C1M55_03000 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D C1M55_16190 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D C1M55_05000 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D C1M55_02925 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_00340 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_07410 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_04995 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_16170 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_02995 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D C1M55_00345 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D C1M55_04670 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D C1M55_15980 ABC transporter substrate-binding protein K25132 hmuT; heme transport system substrate-binding protein D C1M55_15985 iron ABC transporter permease K25133 hmuU; heme transport system permease protein D C1M55_15990 heme ABC transporter ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D C1M55_29310 Fe2+-enterobactin ABC transporter substrate-binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D C1M55_13650 iron siderophore-binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D C1M55_05095 Fe2+-enterobactin ABC transporter substrate-binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D C1M55_27295 ABC transporter substrate-binding protein K25287 desE; iron-desferrioxamine transport system substrate-binding protein D C1M55_21860 ABC transporter substrate-binding protein K25287 desE; iron-desferrioxamine transport system substrate-binding protein D C1M55_12840 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_18750 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_29495 iron ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_05030 ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_13110 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_17090 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_14305 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_18535 ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_28870 ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_23290 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_20755 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_07795 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_01590 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_12300 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_05160 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_02490 iron-siderophore ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_05115 ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_00785 ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D C1M55_01595 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein D C1M55_15505 iron ABC transporter K23186 fepD; iron-siderophore transport system permease protein D C1M55_21880 Fe(3+)-siderophore ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein D C1M55_29305 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein D C1M55_29300 Fe(3+)-hydroxamate ABC transporter permease FhuB K23187 fepG; iron-siderophore transport system permease protein D C1M55_01600 ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein D C1M55_15500 iron ABC transporter K23187 fepG; iron-siderophore transport system permease protein D C1M55_21875 iron ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein D C1M55_29295 fecE; ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D C1M55_01605 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D C1M55_15495 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D C1M55_21870 fecE; ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D C1M55_04450 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_05475 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_27525 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_03845 iron-siderophore ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_21865 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_26695 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_26725 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_27815 Fe2+-enterobactin ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_00595 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_05955 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_09975 iron ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_12295 iron-siderophore ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_05425 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_14815 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_27100 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_21845 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_28965 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_29105 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_23650 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D C1M55_05945 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D C1M55_09980 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D C1M55_05415 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D C1M55_00585 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D C1M55_00590 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D C1M55_05940 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D C1M55_09985 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D C1M55_05420 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D C1M55_12330 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D C1M55_27740 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D C1M55_27005 ABC transporter substrate-binding protein K25034 btuF; cobalamin transport system substrate-binding protein D C1M55_27010 iron ABC transporter permease K25027 btuC; cobalamin transport system permease protein D C1M55_27015 ABC transporter ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D C1M55_30460 metal ABC transporter substrate-binding protein K11601 mntC; manganese transport system substrate-binding protein D C1M55_30450 metal ABC transporter permease K11602 mntB; manganese transport system permease protein D C1M55_30455 metal ABC transporter ATP-binding protein K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5] D C1M55_13870 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D C1M55_13860 energy-coupling factor transporter transmembrane protein EcfT K16783 bioN; biotin transport system permease protein D C1M55_13865 ABC transporter ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D C1M55_13580 energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein D C1M55_13585 ABC transporter K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D C1M55_03895 ABC transporter permease K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D C1M55_03885 metal ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein D C1M55_03890 metal ABC transporter ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D C1M55_01305 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein D C1M55_01300 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D C1M55_00530 ABC transporter permease K09813 hrtB; hemin transport system permease protein D C1M55_25990 ABC transporter permease K09813 hrtB; hemin transport system permease protein D C1M55_25985 ABC transporter ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-] D C1M55_00535 ABC transporter ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-] D C1M55_08515 ABC transporter K25140 drrB; daunorubicin/doxorubicin transport system permease protein D C1M55_08520 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein K25141 drrA; daunorubicin/doxorubicin transport system ATP-binding protein D C1M55_09055 anibiotic ABC transporter K25149 narB; polyether ionophore transport system permease protein D C1M55_09050 ABC transporter ATP-binding protein K25150 narA; polyether ionophore transport system ATP-binding protein D C1M55_11455 ABC transporter permease K09811 ftsX; cell division transport system permease protein D C1M55_11450 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D C1M55_09325 peptide ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_09330 antibiotic transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_13675 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_14655 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_15210 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_07520 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_22355 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_23200 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_16350 antibiotic ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_20605 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_21930 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_22965 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_23710 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_30380 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_28855 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_03990 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_20335 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D C1M55_09335 drrA_gen; DrrA-related ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_13680 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_14660 export ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_15215 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_07515 export ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_03985 DUF4162 domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_06315 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_26995 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_23195 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_16345 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_20330 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_20610 export ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_21935 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_22960 DUF4162 domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_23705 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_30385 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_28850 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D C1M55_05585 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D C1M55_10905 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein D C1M55_20175 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein D C1M55_04025 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D C1M55_05590 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D C1M55_10900 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D C1M55_20180 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D C1M55_15240 sufC; Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D C1M55_30615 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D C1M55_13345 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D C1M55_14300 MFS transporter K08139 HXT; MFS transporter, SP family, sugar:H+ symporter D C1M55_25045 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D C1M55_01515 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D C1M55_04295 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D C1M55_18640 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D C1M55_06055 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D C1M55_00805 MFS transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D C1M55_09930 MFS transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D C1M55_00110 MFS transporter K13021 ttuB; MFS transporter, ACS family, tartrate transporter D C1M55_27415 MFS transporter K05548 benK; MFS transporter, AAHS family, benzoate transport protein D C1M55_13270 MFS transporter K05548 benK; MFS transporter, AAHS family, benzoate transport protein D C1M55_11210 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D C1M55_27260 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D C1M55_11215 NarK/NasA family nitrate transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D C1M55_27865 MFS transporter K23677 SPNS; MFS transporter, Spinster family, sphingosine-1-phosphate transporter D C1M55_13655 enterobactin transporter EntS K08225 entS; MFS transporter, ENTS family, enterobactin (siderophore) exporter D C1M55_01855 Bcr/CflA family drug resistance efflux transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D C1M55_12880 Bcr/CflA family drug resistance efflux transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D C1M55_19595 Bcr/CflA family drug resistance efflux transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D C1M55_06185 MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D C1M55_29560 MFS transporter K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein D C1M55_04190 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D C1M55_10130 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D C1M55_23930 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D C1M55_17355 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D C1M55_07085 MFS transporter K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein D C1M55_27450 MFS transporter K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D C1M55_24405 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D C1M55_19095 MFS transporter K06902 UMF1; MFS transporter, UMF1 family D C1M55_14000 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D C1M55_19650 ptsP; phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D C1M55_13980 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D C1M55_19655 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D C1M55_19670 PTS glucose transporter subunit IIA K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D C1M55_19660 PTS N-acetylglucosamine transporter subunit IIBC K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D C1M55_19665 PTS sugar transporter K02803 nagEb; N-acetylglucosamine PTS system EIIB component [EC:2.7.1.193] D C1M55_13985 PTS lactose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D C1M55_18555 AraC family transcriptional regulator K06188 aqpZ; aquaporin Z D C1M55_23180 aquaporin family protein K02440 glpF; glycerol uptake facilitator D C1M55_25315 ion transporter K10716 kch; voltage-gated potassium channel D C1M55_11290 potassium transporter Kef K10716 kch; voltage-gated potassium channel D C1M55_02130 ammonium transporter K03320 amt; ammonium transporter, Amt family D C1M55_12720 ammonium transporter K03320 amt; ammonium transporter, Amt family D C1M55_01435 ammonium transporter K03320 amt; ammonium transporter, Amt family D C1M55_15325 VWA domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog D C1M55_22135 mscL; large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel D C1M55_11440 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel D C1M55_26735 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel D C1M55_01475 yut; urea transporter K08717 utp; urea transporter D C1M55_02760 transporter K22112 amiS; putative amide transporter protein D C1M55_25190 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D C1M55_20415 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D C1M55_11850 CrcB family protein K06199 crcB; fluoride exporter D C1M55_11855 fluoride efflux transporter CrcB K06199 crcB; fluoride exporter D C1M55_23795 DUF1211 domain-containing protein K24915 TMEM175; TMEM175 potassium channel family protein D C1M55_15440 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D C1M55_18400 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D C1M55_15445 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D C1M55_01020 hypothetical protein K21449 ata; trimeric autotransporter adhesin D C1M55_10415 hypothetical protein K21449 ata; trimeric autotransporter adhesin D C1M55_11740 hypothetical protein K21449 ata; trimeric autotransporter adhesin D C1M55_21250 hypothetical protein K21449 ata; trimeric autotransporter adhesin D C1M55_24270 hypothetical protein K21449 ata; trimeric autotransporter adhesin D C1M55_01060 amino acid permease K11735 gabP; GABA permease D C1M55_22525 D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter D C1M55_28770 amino acid permease K11738 ansP; L-asparagine permease D C1M55_07700 proY; amino acid permease K16234 hutT; histidine transporter D C1M55_20600 amino acid permease K16237 aroP; aromatic amino acid permease D C1M55_09165 eat; ethanolamine permease K16238 eat; ethanolamine permease D C1M55_00905 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D C1M55_07185 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D C1M55_09970 MMPL family transporter K20470 mmpL3; trehalose monomycolate/heme transporter D C1M55_05350 RND transporter K20470 mmpL3; trehalose monomycolate/heme transporter D C1M55_13125 QacE family quaternary ammonium compound efflux SMR transporter K03297 emrE; small multidrug resistance pump D C1M55_13120 QacE family quaternary ammonium compound efflux SMR transporter K03297 emrE; small multidrug resistance pump D C1M55_04890 QacE family quaternary ammonium compound efflux SMR transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE D C1M55_02295 EamA family transporter K15268 eamA; O-acetylserine/cysteine efflux transporter D C1M55_08855 EamA family transporter K11939 rhtA; inner membrane transporter RhtA D C1M55_17290 EamA family transporter K11939 rhtA; inner membrane transporter RhtA D C1M55_17390 rarD; EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD D C1M55_25120 YnfA family protein K09771 TC.SMR3; small multidrug resistance family-3 protein D C1M55_26800 gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D C1M55_10685 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D C1M55_03105 BCCT family transporter K02168 betT; choline/glycine/proline betaine transport protein D C1M55_22765 cation acetate symporter K14393 actP; cation/acetate symporter D C1M55_09240 glutamate/aspartate:proton symporter GltP K11103 dctA; aerobic C4-dicarboxylate transport protein D C1M55_05140 C4-dicarboxylate transporter DctA K11103 dctA; aerobic C4-dicarboxylate transport protein D C1M55_02735 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D C1M55_00320 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D C1M55_22805 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D C1M55_29090 sodium:proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D C1M55_14180 potassium transporter TrkA K07228 khtT; K+:H+ antiporter subunit KhtT D C1M55_14185 cation:proton antiporter K26732 khtU; K+:H+ antiporter subunit KhtU D C1M55_14255 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D C1M55_14260 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D C1M55_03125 cytosine permease K10974 codB; cytosine permease D C1M55_26740 cytosine permease K10974 codB; cytosine permease D C1M55_10705 purine permease K24206 uacT; uric acid transporter D C1M55_23280 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease D C1M55_27425 benzoate transporter K05782 benE; benzoate membrane transport protein D C1M55_19755 benzoate transporter K05782 benE; benzoate membrane transport protein D C1M55_28440 ClC family H(+)/Cl(-) exchange transporter K03281 clcA; chloride channel protein, CIC family D C1M55_23545 HoxN/HupN/NixA family nickel/cobalt transporter K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein D C1M55_05670 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family D C1M55_30775 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family D C1M55_31190 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family D C1M55_28790 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family D C1M55_26080 divalent metal cation transporter MntH K03322 mntH; manganese transport protein D C1M55_17640 arsenic-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D C1M55_18010 transporter K03893 arsB; arsenical pump membrane protein D C1M55_17330 arsB; arsenical-resistance protein K03325 ACR3; arsenite transporter D C1M55_07610 Na+/H+ antiporter subunit A K05565 mnhA; multicomponent Na+:H+ antiporter subunit A D C1M55_07605 Na(+)/H(+) antiporter subunit C K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D C1M55_07600 Na+/H+ antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D C1M55_07595 Na+/H+ antiporter subunit E K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D C1M55_07590 cation:proton antiporter K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D C1M55_07585 Na+/H+ antiporter subunit G K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D C1M55_05610 virulence factor MviN K03980 murJ; putative peptidoglycan lipid II flippase D C1M55_30680 peptidoglycan biosynthesis protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D C1M55_22200 AEC family transporter K13936 mdcF; malonate transporter and related proteins D C1M55_28435 amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO D C1M55_17040 threonine transporter RhtB K05834 rhtB; homoserine/homoserine lactone efflux protein D C1M55_23535 branched-chain amino acid ABC transporter permease K26605 azlC; branched chain amino acid efflux pump D C1M55_17190 branched-chain amino acid permease K26605 azlC; branched chain amino acid efflux pump D C1M55_17185 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump D C1M55_23540 branched-chain amino acid ABC transporter K26606 azlD; branched chain amino acid efflux pump D C1M55_17235 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D C1M55_07030 tripartite tricarboxylate transporter substrate binding protein K07795 tctC; putative tricarboxylic transport membrane protein D C1M55_05310 AI-2E family transporter K20469 K20469; putative heme transporter D C1M55_01970 hypothetical protein K09125 yhhQ; queuosine precursor transporter D C1M55_24005 VIT family protein K22736 VIT; vacuolar iron transporter family protein D C1M55_26975 rubrerythrin family protein K22736 VIT; vacuolar iron transporter family protein D C1M55_20405 MarC family protein K05595 marC; multiple antibiotic resistance protein D C1M55_17500 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D C1M55_24020 ftsW; putative lipid II flippase FtsW K03588 ftsW; cell division protein FtsW D C1M55_00815 UPF0016 domain-containing protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D C1M55_21545 iron transporter K07243 FTR; high-affinity iron transporter D C1M55_21550 peptidase M75 family protein K07224 efeO; iron uptake system component EfeO D C1M55_21555 deferrochelatase/peroxidase EfeB K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-] D C1M55_30980 hypothetical protein K03646 tolA; colicin import membrane protein D C1M55_08440 cytochrome c biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein D C1M55_14360 molybdopterin guanine dinucleotide-containing S/N-oxide reductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] D C1M55_06660 protein tyrosine kinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3] D C1M55_06720 protein tyrosine kinase K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3] D C1M55_21580 hypothetical protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3] D C1M55_21585 hypothetical protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3] D C1M55_21810 nicotinamide riboside transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter D C1M55_05300 UPF0104 family protein K20468 K20468; putative heme transporter D C1M55_03325 MgtC/SapB family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D C1M55_10760 uraH; hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D C1M55_00675 copper resistance protein CopD K07245 pcoD; copper resistance protein D D C1M55_00680 copper resistance protein CopC K07156 copC; copper resistance protein C C 02044 Secretion system [BR:rqi02044] D C1M55_14890 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D C1M55_02815 ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D C1M55_02820 secretion protein F K12510 tadB; tight adherence protein B D C1M55_17455 YggT family protein K02221 yggT; YggT family protein D C1M55_18590 competence protein ComEA K02237 comEA; competence protein ComEA D C1M55_18585 DUF4131 domain-containing protein K02238 comEC; competence protein ComEC D C1M55_09550 eccB; type VII secretion protein EccB K27085 eccB; ESX secretion system ATPase EccB D C1M55_09565 type VII secretion protein EccCa K27086 eccC; ESX secretion system protein EccC D C1M55_09560 eccD; type VII secretion integral membrane protein EccD K27087 eccD; ESX secretion system protein EccD D C1M55_09545 eccE; type VII secretion protein EccE K27088 eccE; ESX secretion system protein EccE D C1M55_09555 mycP; type VII secretion-associated serine protease mycosin K14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-] D C1M55_00980 ESX secretion-associated protein EspG K27091 espG; ESX secretion-associated protein EspG D C1M55_08130 ESX secretion-associated protein EspG K27091 espG; ESX secretion-associated protein EspG D C1M55_09580 WXG100 family type VII secretion target K14956 esx; ESAT-6 family protein D C1M55_11050 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D C1M55_14585 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D C1M55_08685 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D C1M55_14590 protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D C1M55_15115 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D C1M55_09475 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D C1M55_12735 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D C1M55_12715 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D C1M55_14580 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D C1M55_23890 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D C1M55_30755 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D C1M55_06375 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D C1M55_15790 twin-arginine translocase TatA/TatE family subunit K03116 tatA; sec-independent protein translocase protein TatA D C1M55_20510 tatB; twin-arginine translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB D C1M55_15785 tatC; twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:rqi02042] D C1M55_15440 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D C1M55_18400 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D C1M55_15445 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D C1M55_20995 hypothetical protein K11068 hlyIII; hemolysin III D C1M55_29055 phospholipase C, phosphocholine-specific K01114 plc; phospholipase C [EC:3.1.4.3] C 02022 Two-component system [BR:rqi02022] D C1M55_08210 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3] D C1M55_08215 DNA-binding response regulator K07776 regX3; two-component system, OmpR family, response regulator RegX3 D C1M55_18360 sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D C1M55_18355 DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D C1M55_22150 sensor histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] D C1M55_15735 HAMP domain-containing protein K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] D C1M55_22155 DNA-binding response regulator K07669 mprA; two-component system, OmpR family, response regulator MprA D C1M55_09790 HAMP domain-containing protein K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D C1M55_11030 sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3] D C1M55_11025 DNA-binding response regulator K07670 mtrA; two-component system, OmpR family, response regulator MtrA D C1M55_02450 sensor histidine kinase K07655 prrB; two-component system, OmpR family, sensor histidine kinase PrrB [EC:2.7.13.3] D C1M55_23065 sensor histidine kinase K07655 prrB; two-component system, OmpR family, sensor histidine kinase PrrB [EC:2.7.13.3] D C1M55_02455 DNA-binding response regulator K07671 prrA; two-component system, OmpR family, response regulator PrrA D C1M55_23060 DNA-binding response regulator K07671 prrA; two-component system, OmpR family, response regulator PrrA D C1M55_04910 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D C1M55_04905 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D C1M55_06890 DNA-binding response regulator K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D C1M55_23715 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D C1M55_30375 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D C1M55_23720 DNA-binding response regulator K07693 desR; two-component system, NarL family, response regulator DesR D C1M55_30370 DNA-binding response regulator K07693 desR; two-component system, NarL family, response regulator DesR D C1M55_22490 histidine kinase K07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3] D C1M55_06135 DNA-binding response regulator K07695 devR; two-component system, NarL family, response regulator DevR D C1M55_22495 DNA-binding response regulator K07695 devR; two-component system, NarL family, response regulator DevR D C1M55_20445 ATP-binding protein K02480 K02480; two-component system, NarL family, sensor kinase [EC:2.7.13.3] D C1M55_07025 GHKL domain-containing protein K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D C1M55_22790 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D C1M55_15360 HoxX K19640 hypX; putative two-component system protein, hydrogenase maturation factor HypX/HoxX D C1M55_11130 ATPase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] D C1M55_16625 response regulator K22010 pdtaR; two-component system, response regulator PdtaR D C1M55_06460 ANTAR domain-containing protein K07183 nasT; two-component system, response regulator / RNA-binding antiterminator C 02035 Bacterial motility proteins [BR:rqi02035] D C1M55_14890 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D C1M55_02815 ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:rqi04812] D C1M55_17480 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D C1M55_11160 ParA family protein K03496 parA; chromosome partitioning protein D C1M55_16260 ParA family protein K03496 parA; chromosome partitioning protein D C1M55_30730 ParA family protein K03496 parA; chromosome partitioning protein D C1M55_30860 ParA family protein K03496 parA; chromosome partitioning protein D C1M55_31320 ATPase K03496 parA; chromosome partitioning protein D C1M55_24130 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D C1M55_30725 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D C1M55_31090 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:rqi04147] D C1M55_25335 molecular chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D C1M55_21535 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D C1M55_15095 gap; type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D C1M55_15100 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D C1M55_16655 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D C1M55_00090 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D C1M55_25860 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D C1M55_07785 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D C1M55_03085 flotillin family protein K07192 FLOT; flotillin D C1M55_09685 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D C1M55_07740 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D C1M55_06840 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D C1M55_29795 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D C1M55_22340 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D C1M55_30530 hypothetical protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D C1M55_09730 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D C1M55_09735 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D C1M55_08930 tuf; elongation factor Tu K02358 tuf; elongation factor Tu D C1M55_03705 HIT domain-containing protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D C1M55_05080 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D C1M55_20815 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D C1M55_30615 bile acid:sodium symporter K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D C1M55_26200 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_00450 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_00645 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_02120 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_27720 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_17655 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_19970 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_20225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_27695 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_28425 AMP-dependent synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D C1M55_25770 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26145 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_01065 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_06015 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02155 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_02260 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04430 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04600 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_04625 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_05530 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_26675 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_27635 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22640 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_19310 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21060 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_21905 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_22635 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_28955 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D C1M55_11015 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D C1M55_09480 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D C1M55_14600 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D C1M55_16370 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D C1M55_16375 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D C1M55_12605 aminotransferase class V-fold PLP-dependent enzyme K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D C1M55_23760 fahA; fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D C1M55_27930 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D C1M55_19290 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D C1M55_10610 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D C1M55_23175 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D C1M55_25810 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_17840 glnA; type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_17965 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_19045 glutamine synthetase type III K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_30570 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D C1M55_08325 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D C1M55_25575 hppD; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D C1M55_20700 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D C1M55_09995 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D C1M55_12520 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D C1M55_22280 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D C1M55_25440 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_07790 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_23120 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_30485 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D C1M55_12390 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit D C1M55_15170 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D C1M55_15105 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D C1M55_08205 gpmA; phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D C1M55_12180 lipocalin K03098 APOD; apolipoprotein D and lipocalin family protein C 02048 Prokaryotic defense system [BR:rqi02048] D C1M55_01645 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_19585 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_31255 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D C1M55_21340 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D C1M55_10525 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D C1M55_07755 PspC domain-containing protein K03973 pspC; phage shock protein C D C1M55_17480 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D C1M55_01995 tRNA glutamyl-Q(34) synthetase GluQRS K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D C1M55_12540 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D C1M55_12405 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:rqi01504] D C1M55_26955 ABC transporter ATP-binding protein K18230 tylC; macrolide transport system ATP-binding/permease protein D C1M55_24640 antibiotic acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D C1M55_29560 MFS transporter K18553 cmlR; MFS transporter, DHA1 family, chloramphenicol resistance protein D C1M55_17355 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D C1M55_10225 iri; rifampin monooxygenase Iri K21267 iri; rifampicin monooxygenase [EC:1.14.13.211] D C1M55_15480 M56 family peptidase K02172 blaR1; bla regulator protein blaR1 D C1M55_15485 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D C1M55_04960 serine hydrolase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D C1M55_09805 peptidase M15 K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D C1M55_16120 DUF2156 domain-containing protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D C1M55_15490 DUF2156 domain-containing protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D C1M55_23040 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D C1M55_05665 MerR family DNA-binding transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D C1M55_27305 MerR family DNA-binding transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D C1M55_31200 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:rqi00536] D C1M55_08055 heparin-binding hemagglutinin K16645 hbhA; heparin binding hemagglutinin HbhA C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rqi00537] D C1M55_09995 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D C1M55_25860 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D C1M55_07785 membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:rqi03100] D C1M55_11880 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D C1M55_00065 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D C1M55_22095 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D C1M55_01580 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D C1M55_19010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D C1M55_19495 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D C1M55_22670 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D C1M55_18225 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D C1M55_24050 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D C1M55_21355 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D C1M55_13685 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D C1M55_19590 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D C1M55_14440 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D C1M55_21695 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D C1M55_12545 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D C1M55_12550 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D C1M55_24055 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D C1M55_14430 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D C1M55_18820 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D C1M55_14445 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D C1M55_06330 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D C1M55_20830 tRNA-His K14226 tRNA-His; tRNA His D C1M55_28235 tRNA-His K14226 tRNA-His; tRNA His D C1M55_19135 tRNA-His K14226 tRNA-His; tRNA His D C1M55_00060 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D C1M55_21515 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D C1M55_16030 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D C1M55_16630 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D C1M55_19205 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D C1M55_00185 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D C1M55_16025 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D C1M55_19155 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D C1M55_19165 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D C1M55_24075 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D C1M55_26565 tRNA-Met K14230 tRNA-Met; tRNA Met D C1M55_18210 tRNA-Met K14230 tRNA-Met; tRNA Met D C1M55_08660 tRNA-Met K14230 tRNA-Met; tRNA Met D C1M55_11350 tRNA-Met K14230 tRNA-Met; tRNA Met D C1M55_24045 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D C1M55_18815 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D C1M55_16230 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D C1M55_02600 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D C1M55_01335 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D C1M55_01575 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D C1M55_01675 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D C1M55_02055 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D C1M55_08655 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D C1M55_04875 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D C1M55_02870 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D C1M55_08680 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D C1M55_08650 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D C1M55_14425 tRNA-Val K14237 tRNA-Val; tRNA Val D C1M55_14450 tRNA-Val K14237 tRNA-Val; tRNA Val D C1M55_14435 tRNA-Val K14237 tRNA-Val; tRNA Val D C1M55_18060 tRNA-Val K14237 tRNA-Val; tRNA Val D C1M55_02890 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D C1M55_02895 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D C1M55_02900 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D C1M55_02060 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D C1M55_18000 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D C1M55_11495 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D C1M55_01485 KR domain-containing protein K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69] D C1M55_01525 L-idonate 5-dehydrogenase K00098 idnD; L-idonate 5-dehydrogenase [EC:1.1.1.264] D C1M55_27575 S-(hydroxymethyl)mycothiol dehydrogenase K00153 E1.1.1.306; S-(hydroxymethyl)mycothiol dehydrogenase [EC:1.1.1.306] D C1M55_01200 decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase K16652 dprE2; decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase [EC:1.1.1.333] D C1M55_22915 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D C1M55_22930 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D C1M55_23625 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D C1M55_02950 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409] D C1M55_03020 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409] D C1M55_23075 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D C1M55_25425 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D C1M55_23135 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D C1M55_25420 alpha-ketoacid dehydrogenase subunit beta K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D C1M55_23130 alpha-ketoacid dehydrogenase subunit beta K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D C1M55_20270 FAD-binding protein K05888 K05888; L-gulono-1,4-lactone dehydrogenase [EC:1.1.2.-] D C1M55_07460 fgd; glucose-6-phosphate dehydrogenase (coenzyme-F420) K15510 fgd1; coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2] D C1M55_01205 FAD-binding oxidoreductase K16653 dprE1; decaprenylphospho-beta-D-ribofuranose 2-oxidase [EC:1.1.98.3] D C1M55_17375 nitroreductase family deazaflavin-dependent oxidoreductase K00540 fqr; F420H(2)-dependent quinone reductase [EC:1.1.98.-] D C1M55_04595 nitroreductase family deazaflavin-dependent oxidoreductase K00540 fqr; F420H(2)-dependent quinone reductase [EC:1.1.98.-] D C1M55_09210 NDMA-dependent alcohol dehydrogenase K00119 E1.1.99.36; alcohol dehydrogenase (nicotinoprotein) [EC:1.1.99.36] D C1M55_26290 coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D C1M55_30100 (2Fe-2S)-binding protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D C1M55_30105 molybdopterin dehydrogenase K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D C1M55_30095 xanthine dehydrogenase K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D C1M55_23815 indolepyruvate ferredoxin oxidoreductase K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D C1M55_19105 NADPH-dependent 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D C1M55_09350 prephenate dehydrogenase/arogenate dehydrogenase family protein K24002 cmlC; 4-amino-4-deoxyprephenate dehydrogenase [EC:1.3.1.121] D C1M55_09105 mftC; mycofactocin radical SAM maturase K24696 mftC; [mycofactocin precursor peptide]-tyrosine decarboxylase / 3-amino-5-[(4-hydroxyphenyl)methyl]-4,4-dimethylpyrrolidin-2-one synthase [EC:1.3.98.7 4.1.99.26] D C1M55_08630 FAD-dependent oxidoreductase K21401 menJ; menaquinone-9 beta-reductase [EC:1.3.99.38] D C1M55_25650 acyl-CoA dehydrogenase K22818 fadE26; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase alpha subunit [EC:1.3.99.-] D C1M55_02270 acyl-CoA dehydrogenase K22818 fadE26; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase alpha subunit [EC:1.3.99.-] D C1M55_04745 acyl-CoA dehydrogenase K22818 fadE26; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase alpha subunit [EC:1.3.99.-] D C1M55_25640 acyl-CoA dehydrogenase K22819 fadE27; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase beta subunit [EC:1.3.99.-] D C1M55_02275 acyl-CoA dehydrogenase K22819 fadE27; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase beta subunit [EC:1.3.99.-] D C1M55_04740 acyl-CoA dehydrogenase K22819 fadE27; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase beta subunit [EC:1.3.99.-] D C1M55_03915 acyl-CoA dehydrogenase K22820 fadE34; 3-oxochol-4-en-24-oyl-CoA dehydrogenase [EC:1.3.99.-] D C1M55_03920 acyl-CoA dehydrogenase K22821 fadE28; 3-oxo-4-pregnene-20-carboxyl-CoA dehydrogenase alpha subunit [EC:1.3.99.-] D C1M55_03925 acyl-CoA dehydrogenase K22822 fadE29; 3-oxo-4-pregnene-20-carboxyl-CoA dehydrogenase beta subunit [EC:1.3.99.-] D C1M55_09110 alpha-hydroxy-acid oxidizing enzyme K24693 mftD; pre-mycofactocin synthase [EC:1.4.3.26] D C1M55_20925 NADP oxidoreductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D C1M55_10580 NAD(P)H-quinone dehydrogenase K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D C1M55_15190 quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D C1M55_01945 NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D C1M55_02095 quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D C1M55_08820 NADPH:quinone oxidoreductase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D C1M55_27640 NADPH:quinone oxidoreductase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D C1M55_18975 NADPH:quinone oxidoreductase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D C1M55_17275 NADP-dependent oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D C1M55_29700 nitronate monooxygenase K23948 E1.6.5.9; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D C1M55_03625 nitronate monooxygenase K23948 E1.6.5.9; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D C1M55_06825 FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D C1M55_13175 mtr; mycothione reductase K17883 mtr; mycothione reductase [EC:1.8.1.15] D C1M55_30700 NADH:flavin oxidoreductase K22347 nox; 4,4'-dithiodibutanoate disulfide reductase [EC:1.8.1.20] D C1M55_00860 peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D C1M55_14380 msrB; peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D C1M55_20315 glutathione S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D C1M55_17945 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D C1M55_29430 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D C1M55_08185 alpha/beta hydrolase K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D C1M55_05760 peroxidase K15733 E1.11.1.19; dye decolorizing peroxidase [EC:1.11.1.19] D C1M55_19175 thioredoxin-dependent thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D C1M55_16710 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D C1M55_03635 OsmC family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D C1M55_23875 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D C1M55_14065 alkyl hydroperoxide reductase AhpD K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28] D C1M55_14070 peroxiredoxin K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28] D C1M55_18065 peroxiredoxin K24120 ahpE; mycoredoxin-dependent peroxiredoxin [EC:1.11.1.29] D C1M55_24625 peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D C1M55_30525 peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D C1M55_25080 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D C1M55_04355 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D C1M55_25085 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D C1M55_25075 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D C1M55_08845 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D C1M55_08145 TauD/TfdA family dioxygenase K22303 atsK; alkyl sulfatase [EC:1.14.11.77] D C1M55_20020 TauD/TfdA family dioxygenase K22303 atsK; alkyl sulfatase [EC:1.14.11.77] D C1M55_27940 hemin transporter K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D C1M55_04860 L-lysine 6-monooxygenase K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196] D C1M55_22665 FMN-dependent monooxygenase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28] D C1M55_03695 mhuD; mycobilin-forming heme oxygenase MhuD K21481 mhuD; heme oxygenase (mycobilin-producing) [EC:1.14.99.57] D C1M55_09345 diiron oxygenase K24704 cmlI; alpha-N-dichloroacetyl-p-aminophenylserinol N-oxygenase [EC:1.14.99.67] D C1M55_25150 4Fe-4S dicluster domain-containing protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D C1M55_06080 pyridine nucleotide-disulfide oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D C1M55_07310 pyridine nucleotide-disulfide oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D C1M55_28730 4Fe-4S ferredoxin K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D C1M55_01920 NAD(P)/FAD-dependent oxidoreductase K21567 fnr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D C1M55_22040 arsC; arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D C1M55_11300 glutaredoxin-like protein K18917 mrx1; mycoredoxin [EC:1.20.4.3] D C1M55_17325 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D C1M55_29275 SDR family oxidoreductase K14189 dltE; uncharacterized oxidoreductase [EC:1.-.-.-] D C1M55_11835 class I SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D C1M55_11840 methyltransferase domain-containing protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D C1M55_02170 SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D C1M55_17055 class I SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D C1M55_24930 methyltransferase domain-containing protein K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D C1M55_28950 sugar O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D C1M55_24490 mshD; mycothiol synthase K15520 mshD; mycothiol synthase [EC:2.3.1.189] D C1M55_15610 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D C1M55_18600 SGNH/GDSL hydrolase family protein K22797 octT; diglucosylglycerate octanoyltransferase [EC:2.3.1.273] D C1M55_27235 hypothetical protein K22463 afsA; 2-oxo-3-(phosphooxy)propyl 3-oxoalkanoate synthase [EC:2.3.1.277] D C1M55_24740 N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D C1M55_00425 GNAT family N-acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D C1M55_22880 GNAT family N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-] D C1M55_23310 glutaminyl-peptide cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5] D C1M55_08190 mshA; D-inositol-3-phosphate glycosyltransferase K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250] D C1M55_08015 glycosyltransferase family 1 protein K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250] D C1M55_16680 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D C1M55_22345 hypothetical protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D C1M55_21035 hypothetical protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D C1M55_26600 carbohydrate kinase family protein K18478 yihV; sulfofructose kinase [EC:2.7.1.184] D C1M55_12645 DAK2 domain-containing protein K07030 fakA; fatty acid kinase [EC:2.7.2.18] D C1M55_17960 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D C1M55_30030 RNA-directed DNA polymerase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D C1M55_24805 sensor domain-containing diguanylate cyclase K13069 E2.7.7.65; diguanylate cyclase [EC:2.7.7.65] D C1M55_03790 DNA integrity scanning protein DisA K07067 disA; diadenylate cyclase [EC:2.7.7.85] D C1M55_13230 YdiU family protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D C1M55_00670 sulfotransferase K21014 stf0; trehalose 2-sulfotransferase [EC:2.8.2.37] D C1M55_25885 CoA transferase K18702 uctC; CoA:oxalate CoA-transferase [EC:2.8.3.19] D C1M55_02680 carboxylesterase/lipase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D C1M55_19845 carboxylesterase/lipase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D C1M55_22390 carboxylesterase/lipase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D C1M55_22395 carboxylesterase/lipase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D C1M55_29125 carboxylesterase/lipase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D C1M55_11270 alpha/beta hydrolase K19311 lipV; lipase [EC:3.1.1.-] D C1M55_01120 cutinase family protein K27360 cut6; phospholipase A/thioesterase [EC:3.1.1.-] D C1M55_18895 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D C1M55_18905 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D C1M55_19760 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D C1M55_08240 HAD-IB family hydrolase K15781 serB-plsC; putative phosphoserine phosphatase / 1-acylglycerol-3-phosphate O-acyltransferase [EC:3.1.3.3 2.3.1.51] D C1M55_26470 protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D C1M55_25695 protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D C1M55_00395 protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D C1M55_13535 protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D C1M55_14190 protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D C1M55_10770 protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D C1M55_18605 histidine phosphatase family protein K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85] D C1M55_20410 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D C1M55_08795 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D C1M55_09855 sulfatase K01133 betC; choline-sulfatase [EC:3.1.6.6] D C1M55_25495 alkyl/aryl-sulfatase K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D C1M55_05655 hypothetical protein K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D C1M55_06045 MBL fold metallo-hydrolase K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D C1M55_21995 TatD family deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D C1M55_31485 nuclease K01174 nuc; micrococcal nuclease [EC:3.1.31.1] D C1M55_19330 endonuclease NucS K07503 nucS; endonuclease [EC:3.1.-.-] D C1M55_28885 alpha/beta hydrolase K11750 frsA; esterase FrsA [EC:3.1.-.-] D C1M55_13505 glycosidase K05991 E3.2.1.123; endoglycosylceramidase [EC:3.2.1.123] D C1M55_29060 endoglycoceramidase K05991 E3.2.1.123; endoglycosylceramidase [EC:3.2.1.123] D C1M55_30410 glycogen debranching protein K23086 ggH; glucosylglycerate hydrolase [EC:3.2.1.208] D C1M55_19050 DUF4185 domain-containing protein K27495 endoMA; D-arabinan endo alpha-(1,5)-arabinofuranosidase [EC:3.2.1.226] D C1M55_27625 DUF4185 domain-containing protein K27495 endoMA; D-arabinan endo alpha-(1,5)-arabinofuranosidase [EC:3.2.1.226] D C1M55_27585 DUF4185 domain-containing protein K27495 endoMA; D-arabinan endo alpha-(1,5)-arabinofuranosidase [EC:3.2.1.226] D C1M55_09135 mftE; mycofactocin biosynthesis peptidyl-dipeptidase MftE K24697 mftE; mycofactocin precursor peptide peptidase [EC:3.4.14.14] D C1M55_09935 serine hydrolase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D C1M55_09940 serine hydrolase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D C1M55_09945 serine hydrolase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D C1M55_13035 serine hydrolase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D C1M55_22715 peptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D C1M55_04045 D-alanyl-D-alanine carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D C1M55_09925 D-aminoacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D C1M55_07555 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D C1M55_10230 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D C1M55_20680 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase K15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103] D C1M55_21010 mca; mycothiol conjugate amidase Mca K18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115] D C1M55_20210 hydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D C1M55_10750 8-oxoguanine deaminase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32] D C1M55_30035 RidA family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D C1M55_15315 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D C1M55_02115 alpha/beta hydrolase K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D C1M55_03940 lipid-transfer protein K25623 ltp2; 17-hydroxy-3-oxo-4-pregnene-20-carboxyl-CoA lyase [EC:4.1.3.-] D C1M55_25630 lipid-transfer protein K25623 ltp2; 17-hydroxy-3-oxo-4-pregnene-20-carboxyl-CoA lyase [EC:4.1.3.-] D C1M55_02245 lipid-transfer protein K25623 ltp2; 17-hydroxy-3-oxo-4-pregnene-20-carboxyl-CoA lyase [EC:4.1.3.-] D C1M55_00465 oleate hydratase K10254 ohyA; oleate hydratase [EC:4.2.1.53] D C1M55_09630 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D C1M55_25645 hypothetical protein K25621 chsH2; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase alpha subunit [EC:4.2.1.-] D C1M55_02230 hypothetical protein K25621 chsH2; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase alpha subunit [EC:4.2.1.-] D C1M55_03930 DNA-binding protein K25621 chsH2; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase alpha subunit [EC:4.2.1.-] D C1M55_25635 hypothetical protein K25622 chsH1; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase beta subunit [EC:4.2.1.-] D C1M55_03935 beta-hydroxyacyl-ACP dehydratase K25622 chsH1; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase beta subunit [EC:4.2.1.-] D C1M55_02240 acyl dehydratase K25622 chsH1; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase beta subunit [EC:4.2.1.-] D C1M55_30310 phenylacetaldoxime dehydratase K13028 oxdA; aliphatic aldoxime dehydratase [EC:4.8.1.2] D C1M55_09360 chorismate mutase K23874 cmlD; 4-amino-4-deoxychorismate mutase [EC:5.4.99.67] D C1M55_30295 fatty-acid--CoA ligase K12508 fcs; feruloyl-CoA synthase [EC:6.2.1.34] D C1M55_04655 acyl-CoA synthetase K18688 fadD19; 3-oxocholest-4-en-26-oate---CoA ligase [EC:6.2.1.42] D C1M55_26085 acyl-CoA synthetase K18688 fadD19; 3-oxocholest-4-en-26-oate---CoA ligase [EC:6.2.1.42] D C1M55_02495 acyl-CoA synthetase K18688 fadD19; 3-oxocholest-4-en-26-oate---CoA ligase [EC:6.2.1.42] D C1M55_16790 acyl-CoA synthetase K18688 fadD19; 3-oxocholest-4-en-26-oate---CoA ligase [EC:6.2.1.42] D C1M55_26885 acyl-CoA synthetase K18688 fadD19; 3-oxocholest-4-en-26-oate---CoA ligase [EC:6.2.1.42] D C1M55_01940 ATP-dependent acyl-CoA ligase K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48] D C1M55_25715 fatty acid--CoA ligase K25775 casG; steroid-24-oyl-CoA synthetase [EC:6.2.1.-] D C1M55_29010 fatty acid--CoA ligase K25775 casG; steroid-24-oyl-CoA synthetase [EC:6.2.1.-] D C1M55_25710 acyl-CoA synthetase K25776 casI; steroid-22-oyl-CoA synthetase [EC:6.2.1.-] D C1M55_15935 mshC; cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase K15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13] D C1M55_08880 acetyl-CoA carboxylase carboxyltransferase subunit K01970 accD2; acyl-CoA carboxylase subunit beta [EC:6.4.1.-] D C1M55_30145 acetyl-CoA carboxyl transferase K04104 accD3; acyl-CoA carboxylase subunit beta [EC:6.4.1.-] D C1M55_22970 acetyl-CoA carboxyl transferase K04104 accD3; acyl-CoA carboxylase subunit beta [EC:6.4.1.-] D C1M55_01140 acyl-CoA carboxylase subunit beta K27093 accD4; long chain acyl-CoA carboxylase carboxyl transferase subunit beta 4 [EC:6.4.1.- 2.1.3.-] D C1M55_08885 acetyl/propionyl-CoA carboxylase subunit alpha K27596 accA2; acyl-CoA carboxylase subunit alpha [EC:6.4.1.-] D C1M55_05235 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D C1M55_13075 cation-translocating P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D C1M55_03320 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] D C1M55_22820 cation-translocating P-type ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-] D C1M55_20130 cation-translocating P-type ATPase K12955 ctpI; cation-transporting P-type ATPase I [EC:7.2.2.-] C 99981 Carbohydrate metabolism D C1M55_10175 sugar phosphate isomerase/epimerase K06605 iolH; myo-inositol catabolism protein IolH D C1M55_14130 acetoin utilization protein AcuC K04768 acuC; acetoin utilization protein AcuC D C1M55_26555 (Fe-S)-binding protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D C1M55_26550 iron-sulfur cluster-binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D C1M55_26545 lactate utilization protein B/C K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D C1M55_18760 formate dehydrogenase accessory sulfurtransferase FdhD K02379 fdhD; FdhD protein D C1M55_04750 ferredoxin K05337 fer; ferredoxin D C1M55_16805 ferredoxin K05337 fer; ferredoxin D C1M55_15250 SUF system NifU family Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins D C1M55_12385 electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit D C1M55_25160 hypothetical protein K09165 K09165; dodecin C 99983 Lipid metabolism D C1M55_30290 DNA alkylation response protein K09456 aidB; putative acyl-CoA dehydrogenase D C1M55_30655 DNA alkylation response protein K09456 aidB; putative acyl-CoA dehydrogenase D C1M55_18595 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit D C1M55_19110 SDR family NAD(P)-dependent oxidoreductase K27306 cmrA; mycolic acid reductase C 99984 Nucleotide metabolism D C1M55_12265 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI K03647 nrdI; protein involved in ribonucleotide reduction C 99985 Amino acid metabolism D C1M55_17470 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein D C1M55_29885 N-acetyltransferase K22479 argA; N-acetyltransferase C 99986 Glycan metabolism D C1M55_06675 O-antigen ligase family protein K16567 exoQ; exopolysaccharide production protein ExoQ D C1M55_23345 resuscitation-promoting factor K21687 rpfA; resuscitation-promoting factor RpfA D C1M55_21970 resuscitation-promoting factor K21688 rpfB; resuscitation-promoting factor RpfB D C1M55_21975 DUF348 domain-containing protein K21688 rpfB; resuscitation-promoting factor RpfB D C1M55_11345 resuscitation-promoting factor K21691 rpfE; resuscitation-promoting factor RpfE D C1M55_14695 LysM peptidoglycan-binding domain-containing protein K21691 rpfE; resuscitation-promoting factor RpfE D C1M55_04475 resuscitation-promoting factor rpfe K21691 rpfE; resuscitation-promoting factor RpfE D C1M55_23085 TIGR00374 family protein K07027 K07027; glycosyltransferase 2 family protein D C1M55_09140 mftF; mycofactocin system glycosyltransferase K24698 mftF; mycofactocin glycosyltransferase C 99987 Cofactor metabolism D C1M55_26870 AarF/ABC1/UbiB kinase family protein K03688 ubiB; ubiquinone biosynthesis protein D C1M55_09095 mftA; mycofactocin precursor K24694 mftA; mycofactocin precursor peptide MftA D C1M55_09100 mftB; mycofactocin biosynthesis chaperone MftB K24695 mftB; mycofactocin biosynthesis protein MftB C 99988 Secondary metabolism C 99999 Others D C1M55_12485 DoxX family protein K15977 K15977; putative oxidoreductase D C1M55_22025 DoxX family protein K15977 K15977; putative oxidoreductase B B 09192 Unclassified: genetic information processing C 99973 Transcription D C1M55_02850 cold-shock protein K03704 cspA; cold shock protein D C1M55_06420 cold-shock protein K03704 cspA; cold shock protein D C1M55_26700 cold-shock protein K03704 cspA; cold shock protein D C1M55_23325 cold-shock protein K03704 cspA; cold shock protein D C1M55_21945 cold-shock protein K03704 cspA; cold shock protein D C1M55_31215 cold-shock protein K03704 cspA; cold shock protein D C1M55_12800 RNA-binding transcriptional accessory protein K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D C1M55_19260 ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D C1M55_18810 trigger factor K03545 tig; trigger factor D C1M55_01455 ureE; urease accessory protein UreE K03187 ureE; urease accessory protein D C1M55_01460 urease accessory protein UreF K03188 ureF; urease accessory protein D C1M55_24450 urease accessory protein K03188 ureF; urease accessory protein D C1M55_01465 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein D C1M55_24445 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein D C1M55_01470 urease accessory protein UreD K03190 ureD; urease accessory protein D C1M55_24440 urease accessory protein UreD K03190 ureD; urease accessory protein D C1M55_11460 SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein D C1M55_13450 hypC; HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC D C1M55_13460 hypC; HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC D C1M55_13465 hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D C1M55_13470 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D C1M55_13455 hypF; carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF D C1M55_12260 glutaredoxin-like protein NrdH K06191 nrdH; glutaredoxin-like protein NrdH D C1M55_31085 glutaredoxin-like protein NrdH K06191 nrdH; glutaredoxin-like protein NrdH D C1M55_12860 ATP-dependent protease K07391 comM; magnesium chelatase family protein D C1M55_27825 DsbA family protein K07396 K07396; putative protein-disulfide isomerase D C1M55_08445 cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein D C1M55_30160 XshC-Cox1 family protein K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D C1M55_11265 DNA methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D C1M55_31225 hypothetical protein K07445 K07445; putative DNA methylase D C1M55_12855 YraN family protein K07460 yraN; putative endonuclease D C1M55_15860 RecB family exonuclease K07465 K07465; putative RecB family exonuclease D C1M55_12865 dprA; DNA-protecting protein DprA K04096 smf; DNA processing protein D C1M55_14865 replication-associated recombination protein A K07478 ycaJ; putative ATPase D C1M55_31440 transposase K07483 K07483; transposase D C1M55_30955 hypothetical protein K07483 K07483; transposase C 99979 Viral proteins C 99998 Others D C1M55_13850 PspA/IM30 family protein K03969 pspA; phage shock protein A D C1M55_02205 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D C1M55_17065 MFS transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D C1M55_03675 hypothetical protein K03293 TC.AAT; amino acid transporter, AAT family D C1M55_27545 amino acid permease K03293 TC.AAT; amino acid transporter, AAT family D C1M55_10990 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D C1M55_12490 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D C1M55_21765 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D C1M55_20005 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D C1M55_07035 citrate:proton symporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family D C1M55_05275 peptide MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D C1M55_08545 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D C1M55_17875 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D C1M55_13525 sodium:solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D C1M55_04455 bile acid:sodium symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family D C1M55_16420 bile acid:sodium symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family D C1M55_25915 cytosine permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D C1M55_23920 nitrate reductase K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D C1M55_27895 anion permease K03319 TC.DASS; divalent anion:Na+ symporter, DASS family C 99978 Cell growth D C1M55_30750 protein jag K06346 jag; spoIIIJ-associated protein D C1M55_10355 recombinase family protein K06400 spoIVCA; site-specific DNA recombinase D C1M55_28355 hypothetical protein K06400 spoIVCA; site-specific DNA recombinase C 99993 Cell motility C 99995 Signaling proteins D C1M55_21105 tellurium resistance protein K05792 terA; tellurite resistance protein TerA D C1M55_03350 TerD family protein K05795 terD; tellurium resistance protein TerD D C1M55_20075 TerD family protein K05795 terD; tellurium resistance protein TerD D C1M55_20855 carbon starvation protein A K06200 cstA; carbon starvation protein D C1M55_20690 typA; translational GTPase TypA K06207 typA; GTP-binding protein D C1M55_18410 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D C1M55_20960 PhoH family protein K07175 phoH2; PhoH-like ATPase D C1M55_14730 CBS domain-containing protein K07182 K07182; CBS domain-containing protein D C1M55_08645 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D C1M55_30405 glycoside hydrolase K07273 acm; lysozyme D C1M55_28095 hypothetical protein K07273 acm; lysozyme C 99994 Others D C1M55_24430 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D C1M55_03395 Tellurite resistance TerB K05793 terB; tellurite resistance protein TerB D C1M55_13820 TerC family protein K05794 terC; tellurite resistance protein TerC D C1M55_28525 TerC family protein K05794 terC; tellurite resistance protein TerC D C1M55_19635 copper homeostasis protein CutC K06201 cutC; copper homeostasis protein D C1M55_03680 NAD(P)/FAD-dependent oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport D C1M55_28935 hypothetical protein K07225 hmuS; putative hemin transport protein B B 09194 Poorly characterized C 99996 General function prediction only D C1M55_13190 GNAT family N-acetyltransferase K02348 elaA; ElaA protein D C1M55_30430 PHP domain-containing protein K04477 ycdX; putative hydrolase D C1M55_02845 DUF1998 domain-containing protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein D C1M55_18875 globin K06886 glbN; hemoglobin D C1M55_26385 hypothetical protein K06994 K06994; putative drug exporter of the RND superfamily D C1M55_09220 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D C1M55_01835 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D C1M55_04845 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D C1M55_15940 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D C1M55_18145 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily D C1M55_24725 patatin K07001 K07001; NTE family protein D C1M55_28675 patatin K07001 K07001; NTE family protein D C1M55_27705 HAD family phosphatase K07025 K07025; putative hydrolase of the HAD superfamily D C1M55_15230 sufB; Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D C1M55_15235 sufD; Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D C1M55_26580 phosphotriesterase K07048 PTER; phosphotriesterase-related protein D C1M55_27725 phosphotriesterase K07048 PTER; phosphotriesterase-related protein D C1M55_14160 YihY/virulence factor BrkB family protein K07058 K07058; membrane protein D C1M55_10155 yhjD; inner membrane protein YhjD K07058 K07058; membrane protein D C1M55_28785 hypothetical protein K07058 K07058; membrane protein D C1M55_20215 phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase D C1M55_15620 hypothetical protein K07113 fxsA; UPF0716 protein FxsA D C1M55_10800 cysteine desulfuration protein SufE K02426 sufE; cysteine desulfuration protein SufE D C1M55_15885 rhodanese domain-containing protein K07146 K07146; UPF0176 protein D C1M55_03960 VOC family protein K04750 phnB; PhnB protein D C1M55_27440 VOC family protein K04750 phnB; PhnB protein D C1M55_18680 VOC family protein K04750 phnB; PhnB protein D C1M55_00930 cytochrome c oxidase assembly protein K02351 K02351; putative membrane protein D C1M55_07155 DedA family protein K03975 dedA; membrane-associated protein D C1M55_07160 hypothetical protein K03975 dedA; membrane-associated protein D C1M55_00845 hypothetical protein K01421 yhgE; putative membrane protein D C1M55_05560 hypothetical protein K01421 yhgE; putative membrane protein D C1M55_27620 YhgE/Pip domain-containing protein K01421 yhgE; putative membrane protein D C1M55_05910 DUF202 domain-containing protein K00389 yidH; putative membrane protein D C1M55_07455 DUF202 domain-containing protein K00389 yidH; putative membrane protein D C1M55_01805 DUF202 domain-containing protein K00389 yidH; putative membrane protein D C1M55_08500 phage holin family protein K08972 K08972; putative membrane protein D C1M55_20665 hypothetical protein K08981 K08981; putative membrane protein D C1M55_23000 DUF1304 domain-containing protein K08987 K08987; putative membrane protein D C1M55_20190 hypothetical protein K09858 K09858; SEC-C motif domain protein D C1M55_14810 phosphonoacetate hydrolase K06193 phnA; protein PhnA C 99997 Function unknown D C1M55_05355 NYN domain-containing protein K06860 K06860; putative heme uptake system protein D C1M55_01005 ankyrin repeat domain-containing protein K06867 K06867; uncharacterized protein D C1M55_28755 hypothetical protein K06867 K06867; uncharacterized protein D C1M55_21000 thioredoxin domain-containing protein K06888 K06888; uncharacterized protein D C1M55_03165 alpha/beta hydrolase K06889 K06889; uncharacterized protein D C1M55_22270 alpha/beta hydrolase K06889 K06889; uncharacterized protein D C1M55_22865 ATP-binding protein K06945 K06945; uncharacterized protein D C1M55_11825 FAD-dependent oxidoreductase K06954 K06954; uncharacterized protein D C1M55_12750 KH domain-containing protein K06960 K06960; uncharacterized protein D C1M55_26605 BtpA family membrane complex biogenesis protein K06971 K06971; uncharacterized protein D C1M55_14250 N-acetyltransferase K06975 K06975; uncharacterized protein D C1M55_07540 N-acetyltransferase K06975 K06975; uncharacterized protein D C1M55_19835 N-acetyltransferase K06975 K06975; uncharacterized protein D C1M55_12965 DUF4081 domain-containing protein K06976 K06976; uncharacterized protein D C1M55_00565 hydrolase K06978 K06978; uncharacterized protein D C1M55_23985 peptidase S15 K06978 K06978; uncharacterized protein D C1M55_05170 DUF2334 domain-containing protein K06986 K06986; uncharacterized protein D C1M55_04270 DUF861 domain-containing protein K06995 K06995; uncharacterized protein D C1M55_18880 DUF861 domain-containing protein K06995 K06995; uncharacterized protein D C1M55_28580 DUF861 domain-containing protein K06995 K06995; uncharacterized protein D C1M55_05620 VOC family protein K06996 K06996; uncharacterized protein D C1M55_29965 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein D C1M55_26130 pyridoxamine 5'-phosphate oxidase family protein K07006 K07006; uncharacterized protein D C1M55_01610 pyridoxamine 5'-phosphate oxidase family protein K07006 K07006; uncharacterized protein D C1M55_15660 PPOX class F420-dependent oxidoreductase K07006 K07006; uncharacterized protein D C1M55_17870 PPOX class F420-dependent oxidoreductase K07006 K07006; uncharacterized protein D C1M55_04285 esterase K07017 K07017; uncharacterized protein D C1M55_24705 alpha/beta hydrolase K07020 K07020; uncharacterized protein D C1M55_22260 glyoxalase K07032 K07032; uncharacterized protein D C1M55_20100 glyoxalase K07032 K07032; uncharacterized protein D C1M55_00030 metal-dependent hydrolase K07044 K07044; uncharacterized protein D C1M55_23460 metal-dependent hydrolase K07044 K07044; uncharacterized protein D C1M55_29745 metal-dependent hydrolase K07044 K07044; uncharacterized protein D C1M55_26100 amidohydrolase K07045 K07045; uncharacterized protein D C1M55_14840 hypothetical protein K07054 K07054; uncharacterized protein D C1M55_23905 hypothetical protein K07068 K07068; uncharacterized protein D C1M55_04635 DNA-binding protein K07068 K07068; uncharacterized protein D C1M55_28735 benzoylsuccinyl-CoA thiolase K07068 K07068; uncharacterized protein D C1M55_25375 TIGR01777 family protein K07071 K07071; uncharacterized protein D C1M55_15655 TIGR01777 family protein K07071 K07071; uncharacterized protein D C1M55_17815 TIGR01777 family protein K07071 K07071; uncharacterized protein D C1M55_26920 FAD-binding dehydrogenase K07077 K07077; uncharacterized protein D C1M55_07365 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D C1M55_05270 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D C1M55_15640 hypothetical protein K07090 K07090; uncharacterized protein D C1M55_15415 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D C1M55_17025 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D C1M55_30395 PhoX family phosphatase K07093 K07093; uncharacterized protein D C1M55_25305 metallophosphoesterase K07098 K07098; uncharacterized protein D C1M55_16060 metallophosphoesterase K07098 K07098; uncharacterized protein D C1M55_02605 metallophosphoesterase K07098 K07098; uncharacterized protein D C1M55_27510 NAD-dependent epimerase K07118 K07118; uncharacterized protein D C1M55_07075 SDR family NAD(P)-dependent oxidoreductase K07124 K07124; uncharacterized protein D C1M55_17160 SDR family NAD(P)-dependent oxidoreductase K07124 K07124; uncharacterized protein D C1M55_25830 KR domain-containing protein K07124 K07124; uncharacterized protein D C1M55_22855 dynein regulation protein LC7 K07131 K07131; uncharacterized protein D C1M55_26535 ATP-dependent protease K07157 K07157; uncharacterized protein D C1M55_09005 VWA domain-containing protein K07161 K07161; uncharacterized protein D C1M55_18620 VWA domain-containing protein K07161 K07161; uncharacterized protein D C1M55_18020 hypothetical protein K07164 K07164; uncharacterized protein D C1M55_30760 membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D C1M55_16075 bifunctional nuclease family protein K08999 K08999; uncharacterized protein D C1M55_21525 DUF501 domain-containing protein K09009 K09009; uncharacterized protein D C1M55_02610 GatB/YqeY domain-containing protein K09117 K09117; uncharacterized protein D C1M55_11340 membrane protein K09118 K09118; uncharacterized protein D C1M55_16530 DUF402 domain-containing protein K09146 K09146; uncharacterized protein D C1M55_07425 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein D C1M55_20660 hypothetical protein K09167 K09167; uncharacterized protein D C1M55_30090 carbon monoxide dehydrogenase K09386 K09386; uncharacterized protein D C1M55_11830 DUF1365 domain-containing protein K09701 K09701; uncharacterized protein D C1M55_03135 DUF917 domain-containing protein K09703 K09703; uncharacterized protein D C1M55_03140 DUF917 domain-containing protein K09703 K09703; uncharacterized protein D C1M55_26530 DUF309 domain-containing protein K09763 K09763; uncharacterized protein D C1M55_13330 DUF503 domain-containing protein K09764 K09764; uncharacterized protein D C1M55_13825 hypothetical protein K09780 K09780; uncharacterized protein D C1M55_07200 DUF808 domain-containing protein K09781 K09781; uncharacterized protein D C1M55_16360 protein YcaR in KDO2-Lipid A biosynthesis cluster K09791 K09791; uncharacterized protein D C1M55_07300 DUF456 domain-containing protein K09793 K09793; uncharacterized protein D C1M55_03345 DUF475 domain-containing protein K09799 K09799; uncharacterized protein D C1M55_14285 SIMPL domain-containing protein K09807 K09807; uncharacterized protein D C1M55_11105 DUF541 domain-containing protein K09807 K09807; uncharacterized protein D C1M55_13235 peroxide stress protein YaaA K09861 K09861; uncharacterized protein D C1M55_04535 winged helix-turn-helix domain-containing protein K09927 K09927; uncharacterized protein D C1M55_30510 DUF692 domain-containing protein K09930 K09930; uncharacterized protein D C1M55_20740 antibiotic biosynthesis monooxygenase K09932 K09932; uncharacterized protein D C1M55_16885 antibiotic biosynthesis monooxygenase K09932 K09932; uncharacterized protein D C1M55_01650 hypothetical protein K09957 K09957; uncharacterized protein D C1M55_02690 DUF1348 domain-containing protein K09958 K09958; uncharacterized protein D C1M55_09160 DUF779 domain-containing protein K09959 K09959; uncharacterized protein D C1M55_05555 hypothetical protein K09962 K09962; uncharacterized protein D C1M55_14710 DUF1989 domain-containing protein K09967 K09967; uncharacterized protein D C1M55_14715 DUF1989 domain-containing protein K09967 K09967; uncharacterized protein D C1M55_05755 hypothetical protein K09968 K09968; uncharacterized protein D C1M55_27290 proline hydroxylase K09990 K09990; uncharacterized protein D C1M55_13320 DUF448 domain-containing protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 30, 2024