+E Transcription factors KO
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Transcription Factors - Staphylococcus carnosus subsp. carnosus
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
C LysR family
D SCA_0104 gltC; putative transcription activator of glutamate synthase operon K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D SCA_2371 hypothetical protein K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D SCA_2243 putative transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D SCA_0929 putative LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D SCA_0676 lacR; putative lactose phosphotransferase system repressor lacR K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D SCA_0346 putative transcriptional regulators of sugar metabolism K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D SCA_1186 truncated CBS domain protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D SCA_2422 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SCA_1342 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SCA_1772 galR; Galactose operon repressor GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SCA_2423 conserved hypothetical protein, similar to rbs operon repressor RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D SCA_0111 putative trehalose operon transcriptional regulator K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D SCA_0918 putative GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D SCA_1649 conserved hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D SCA_0172 GntR family regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D SCA_1950 gntR; putative gluconate operon transcriptional repressor K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor
C TetR/AcrR family
D SCA_0084 similar to ica operon transcriptional regulator K21453 icaR; TetR/AcrR family transcriptional regulator, biofilm operon repressor
C Lrp/AsnC family
C LuxR family
C MarR family
D SCA_1970 putative transcription regulator MarR family K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D SCA_0333 MarR family regulatory protein K18906 mgrA; MarR family transcriptional regulator, multiple gene regulator MgrA
D SCA_1874 putative transcriptional regulator K18909 mepR; MarR family transcriptional regulator, repressor for mepA
D SCA_2432 MarR family regulatory protein K18909 mepR; MarR family transcriptional regulator, repressor for mepA
D SCA_1859 putative transcriptional regulator K21454 tcaR; MarR family transcriptional regulator, teicoplanin-associated locus regulator
D SCA_1881 conserved hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D SCA_0655 putative transcriptional regulator, MarR type K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D SCA_0958 putative HTH-type transcriptional regulator, MerR family K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
C Fur family
D SCA_1124 fur; iron uptake regulatory protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D SCA_1175 fur; putative ferric uptake regulator K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D SCA_1434 perR; transcription regulator Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D SCA_2083 putative transcriptional regulator protein K21828 arcR; CRP/FNR family transcriptional regulator, arginine deiminase pathway regulator
C Rrf2 family
D SCA_1238 conserved hypothetical protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D SCA_2330 putative transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D SCA_0113 similar to transcriptional regulator (ArsR family) K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
C XRE family
C PadR family
D SCA_2031 conserved hypothetical protein K10947 K10947; PadR family transcriptional regulator
D SCA_0070 putative transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D SCA_0276 putative metal dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D SCA_1090 birA; putative bifunctional protein [includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D SCA_2164 cudC; putative transcriptional regulator of cud operon K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D SCA_0146 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D SCA_1553 conserved hypothetical protein K01926 rex; redox-sensing transcriptional repressor
D SCA_0890 codY; transcription pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D SCA_1536 hypothetical protein K07727 K07727; putative transcriptional regulator
D SCA_1839 putative transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D SCA_1575 hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D SCA_0998 glcT; transcription antiterminator GlcT K03480 glcT; transcriptional antiterminator
D SCA_1659 conserved hypothetical protein K03483 mtlR; mannitol operon transcriptional activator
D SCA_2441 putative transcriptional regulator K02538 manR; mannose operon transcriptional activator
D SCA_2318 srlM; putative regulator of sorbitol operon K03491 licR; probable licABCH operon transcriptional regulator
C Others
D SCA_1588 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D SCA_2062 conserved hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D SCA_0006 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SCA_0015 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SCA_0947 glpP; putative glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator
D SCA_1144 argR; arginine repressor ArgR K03402 argR; transcriptional regulator of arginine metabolism
D SCA_2082 putative transcriptional regulator protein K03402 argR; transcriptional regulator of arginine metabolism
D SCA_1204 hrcA; putative heat-inducible transcriptional repressor K03705 hrcA; heat-inducible transcriptional repressor
D SCA_2227 putative transcriptional activator TenA K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D SCA_1596 tenA; putative transcriptional activator tenA K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D SCA_2076 hypothetical protein K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D SCA_0178 ctsR; transcription repressor of class III stress genes K03708 ctsR; transcriptional regulator of stress and heat shock response
D SCA_0423 putative transcriptional regulator with sugar binding domain K05311 cggR; central glycolytic genes regulator
D SCA_0812 pyrR; putative pyrimidine operon regulatory protein / uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D SCA_1951 conserved hypothetical protein K07734 paiB; transcriptional regulator
D SCA_1292 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D SCA_0642 putative ComK family protein K02250 comK; competence protein ComK
D SCA_0791 mraZ; conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0