+E Ribosome biogenesis KO
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Ribosome Biogenesis - Staphylococcus carnosus subsp. carnosus
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D SCA_0856 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SCA_1189 era; putative GTP-binding protein Era K03595 era; GTPase
C SCA_1255 obg; Spo0B-associated GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SCA_0901 nusA; putative transcription elongation protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C SCA_1148 nusB; putative N utilization substance protein NusB K03625 nusB; transcription antitermination protein NusB
C SCA_0192 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SCA_1360 RNA pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SCA_0143 ribosomal RNA adenine dimethylase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SCA_0837 putative NusB_Sun RNA binding protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SCA_0197 putative rRNA methylase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D SCA_0749 conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SCA_1199 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SCA_0005 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SCA_0792 mraW; putative MraW methylase family S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SCA_0130 tetrapyrrole (corrin/porphyrin) methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D SCA_0188 spoU; putative rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SCA_2451 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SCA_0702 putative SAM methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SCA_0838 putative Radical SAM family protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SCA_1469 putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SCA_1119 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SCA_0609 putative pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SCA_1425 conserved hypothetical protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SCA_0811 rluD; putative ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C SCA_1556 conserved hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C SCA_2034 putative acetyltransferase, GNAT family K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C SCA_1989 hypothetical protein K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C SCA_0864 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C SCA_1200 putative ribosomal protein L11 methyltransferase (PrmA) family protein K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C SCA_0856 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SCA_1228 conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C SCA_0187 conserved hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C SCA_1581 putative helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C SCA_1179 putative helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C SCA_1189 era; putative GTP-binding protein Era K03595 era; GTPase
C SCA_0841 conserved hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SCA_1107 putative GTP-binding protein K03977 engA; GTPase
C SCA_1255 obg; Spo0B-associated GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C SCA_0880 putative GTPase K14540 rbgA; ribosome biogenesis GTPase A
C SCA_0955 similar to GTP-binding protein HflX K03665 hflX; GTPase
C SCA_1219 conserved hypothetical protein K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C SCA_1619 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SCA_1245 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SCA_0910 rbfA; putative ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C SCA_0900 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C SCA_2472 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
C SCA_1214 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
C SCA_1192 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C SCA_1217 conserved hypothetical protein K07574 yhbY; RNA-binding protein
C SCA_0400 putative ribosome-associated protein K05808 hpf; ribosome hibernation promoting factor
C SCA_0018 putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
C SCA_0753 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024