+F Repair protein KO #

  DNA Repair and Recombination Proteins - Staphylococcus carnosus subsp. carnosus

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SCA_2000 adaB; putative methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SCA_0233 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SCA_1843 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SCA_1441 putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SCA_1086 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SCA_2148 putative mutator protein mutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCA_0053 mutT; mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCA_1392 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCA_0486 dut; putative dUTP pyrophosphatase, phage associated K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SCA_2000 adaB; putative methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E SCA_0233 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SCA_2193 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SCA_1843 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SCA_1441 putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SCA_1270 tag; putative DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SCA_1296 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SCA_1086 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SCA_1178 putative AP endonuclease family 2 protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E SCA_1247 putative single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SCA_1477 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SCA_1297 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SCA_0408 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SCA_0407 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SCA_0764 uvrC; putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SCA_1478 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SCA_2307 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SCA_1297 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SCA_1477 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SCA_0199 rpoB; RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SCA_0200 rpoC; RNA polymerase beta-prime chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SCA_1709 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SCA_1631 hypothetical protein K03048 rpoE; DNA-directed RNA polymerase subunit delta F SCA_0827 putative DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SCA_0153 mfd; putative transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SCA_0945 mutS; putative DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E SCA_0762 mutS2; MutS2-like protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E SCA_0946 mutL; putative DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SCA_1147 putative exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SCA_1146 putative exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SCA_1308 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SCA_0899 polC; homolog of DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E SCA_2473 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SCA_1208 putative DNA-binding protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SCA_0125 holB; putative DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SCA_1466 conserved hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SCA_0119 dnaX; DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SCA_1477 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SCA_1478 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SCA_2307 Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SCA_0027 ssb; putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SCA_1600 ssb; single strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SCA_0475 ssb; putative single strand DNA binding protein,phage associated K03111 ssb; single-strand DNA-binding protein E SCA_2230 hypothetical protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SCA_1231 conserved hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SCA_0926 recA; RecA protein (recombinase A) K03553 recA; recombination protein RecA E SCA_1253 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E SCA_1252 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SCA_0830 priA; putative primosomal replication factor Y (primosomal protein N') K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SCA_0988 putative ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 E SCA_0987 putative exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SCA_0926 recA; RecA protein (recombinase A) K03553 recA; recombination protein RecA E SCA_0182 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E SCA_2471 recF; DNA repair and genetic recombination protein K03629 recF; DNA replication and repair protein RecF E SCA_0850 recG; putative ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SCA_1247 putative single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SCA_1188 recO; putative recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) E SCA_0121 recR; putative recombination protein K06187 recR; recombination protein RecR E SCA_1143 recN; similar to DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SCA_1083 recU; putative recombination protein U K03700 recU; recombination protein U E SCA_1253 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E SCA_1252 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E SCA_0575 addA; putative ATP-dependent nuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SCA_0574 addB; putative ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E SCA_0988 putative ATPase involved in DNA repair K03546 sbcC; DNA repair protein SbcC/Rad50 E SCA_0987 putative exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SCA_2469 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SCA_2470 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SCA_0884 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SCA_1105 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SCA_1247 putative single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SCA_1188 recO; putative recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) F SCA_0121 recR; putative recombination protein K06187 recR; recombination protein RecR F SCA_1477 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SCA_0368 recQ; DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SCA_1113 putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SCA_0408 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SCA_0407 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SCA_1467 dinP; similar to DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SCA_1008 truncated ImpB/MucB/SamB family protein (fragment 1) K03502 umuC; DNA polymerase V D SCA_1009 truncated ImpB/MucB/SamB family protein (fragment 2) K03502 umuC; DNA polymerase V C Other SOS response factors D SCA_0926 recA; RecA protein (recombinase A) K03553 recA; recombination protein RecA D SCA_0980 lexA; DNA damage-inducible repressor LexA (DinR) K01356 lexA; repressor LexA [EC:3.4.21.88] D SCA_1143 recN; similar to DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SCA_0027 ssb; putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SCA_1600 ssb; single strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SCA_0475 ssb; putative single strand DNA binding protein,phage associated K03111 ssb; single-strand DNA-binding protein D SCA_1446 putative regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D SCA_0761 DNA polymerase family X protein K02347 polX; DNA polymerase (family X) C DNA helicases D SCA_1089 conserved hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SCA_2148 putative mutator protein mutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCA_0053 mutT; mutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCA_1392 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCA_0486 dut; putative dUTP pyrophosphatase, phage associated K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SCA_0379 nrdE; ribonuceloside diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SCA_0380 nrdF; ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D SCA_1309 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024