+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Saccharomyces cerevisiae (budding yeast)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        YDL140C RPO21; DNA-directed RNA polymerase II core subunit RPO21	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        YOR151C RPB2; DNA-directed RNA polymerase II core subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        YIL021W RPB3; DNA-directed RNA polymerase II core subunit RPB3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        YOL005C RPB11; DNA-directed RNA polymerase II core subunit RPB11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        YJL140W RPB4; DNA-directed RNA polymerase II subunit RPB4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        YDR404C RPB7; DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        YGL070C RPB9; DNA-directed RNA polymerase II core subunit RPB9	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        YBR154C RPB5; DNA-directed RNA polymerase core subunit RPB5	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        YPR187W RPO26; DNA-directed RNA polymerase core subunit RPO26	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        YOR224C RPB8; DNA-directed RNA polymerase core subunit RPB8	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        YHR143W-A RPC10; DNA-directed RNA polymerase core subunit RPC10	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        YOR210W RPB10; DNA-directed RNA polymerase core subunit RPB10	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        YOR194C TOA1; transcription initiation factor IIA large subunit	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        YKL058W TOA2; transcription initiation factor IIA subunit gamma	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        YPR086W SUA7; transcription factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        YER148W SPT15; TATA-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        YGR274C TAF1; histone acetyltransferase	K23358 TAF1; transcription initiation factor TFIID subunit 1, fungi type [EC:2.3.1.48] 
E        YCR042C TAF2; Taf2p	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        YPL011C TAF3; Taf3p	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        YBR198C TAF5; chromatin modification protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        YGL112C TAF6; TATA-binding protein-associated factor TAF6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        YMR227C TAF7; TATA-binding protein-associated factor TAF7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        YML114C TAF8; Taf8p	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        YMR236W TAF9; chromatin modification protein	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        YDR167W TAF10; Taf10p	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        YML015C TAF11; TATA-binding protein-associated factor TAF11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        YDR145W TAF12; Taf12p	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        YML098W TAF13; Taf13p	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        YPL129W TAF14; TATA-binding protein-associated factor TAF14	K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit 
E        YDR432W NPL3; mRNA-binding protein NPL3	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      TFIIE
E        YKL028W TFA1; transcription factor TFIIE subunit TFA1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        YKR062W TFA2; transcription factor TFIIE subunit TFA2	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        YGR186W TFG1; transcription factor IIF subunit TFG1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        YGR005C TFG2; transcription factor IIF subunit TFG2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        YDR311W TFB1; TFIIH/NER complex subunit TFB1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        YLR005W SSL1; TFIIH/NER complex subunit SSL1	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        YPR056W TFB4; TFIIH/NER complex subunit TFB4	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        YPL122C TFB2; TFIIH/NER complex subunit TFB2	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        YIL143C SSL2; TFIIH/NER complex ATPase/helicase subunit SSL2	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        YER171W RAD3; TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit RAD3	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        YDR079C-A TFB5; TFIIH complex subunit TFB5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        YDL108W KIN28; TFIIH complex serine/threonine-protein kinase subunit KIN28	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        YDR460W TFB3; TFIIH/NER complex subunit TFB3	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        YPR025C CCL1; TFIIH complex kinase subunit CCL1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        YHR058C MED6; mediator complex subunit MED6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        YBR193C MED8; Med8p	K15130 MED8; mediator of RNA polymerase II transcription subunit 8, fungi type 
E        YMR112C MED11; Med11p	K15132 MED11; mediator of RNA polymerase II transcription subunit 11, fungi type 
E        YER022W SRB4; Srb4p	K15134 SRB4; mediator of RNA polymerase II transcription subunit 17, fungi type 
E        YGR104C SRB5; Srb5p	K15136 SRB5; mediator of RNA polymerase II transcription subunit 18, fungi type 
E        YBL093C ROX3; Rox3p	K15138 ROX3; mediator of RNA polymerase II transcription subunit 19, fungi type 
E        YBR253W SRB6; Srb6p	K15140 SRB6; mediator of RNA polymerase II transcription subunit 22, fungi type 
D      Middle
E        YPR070W MED1; Med1p	K15145 MED1; mediator of RNA polymerase II transcription subunit 1, fungi type 
E        YOR174W MED4; Med4p	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        YGL151W NUT1; Nut1p	K15147 MED5; mediator of RNA polymerase II transcription subunit 5 
E        YOL135C MED7; mediator complex subunit MED7	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        YNR010W CSE2; Cse2p	K15150 CSE2; mediator of RNA polymerase II transcription subunit 9, fungi type 
E        YPR168W NUT2; mediator complex subunit NUT2	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        YDR308C SRB7; Srb7p	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        YGL127C SOH1; mediator complex subunit SOH1	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        YDL005C MED2; Med2p	K15154 MED2; mediator of RNA polymerase II transcription subunit 2 
E        YGL025C PGD1; Pgd1p	K15155 MED3; mediator of RNA polymerase II transcription subunit 3 
E        YLR071C RGR1; Rgr1p	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        YOL051W GAL11; Gal11p	K15158 GAL11; mediator of RNA polymerase II transcription subunit 15, fungi type 
E        YNL236W SIN4; Sin4p	K15160 SIN4; mediator of RNA polymerase II transcription subunit 16, fungi type 
D      CDK-module
E        YPL042C SSN3; cyclin-dependent serine/threonine protein kinase SSN3	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        YNL025C SSN8; cyclin-dependent protein serine/threonine kinase regulator SSN8	K15161 CCNC; cyclin-C 
E        YCR081W SRB8; Srb8p	K15163 SRB8; mediator of RNA polymerase II transcription subunit 12, fungi type 
E        YDR443C SSN2; Ssn2p	K15165 SSN2; mediator of RNA polymerase II transcription subunit 13, fungi type 
D      Other mediators
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        YGR252W GCN5; histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        YHR099W TRA1; histone acetyltransferase TRA1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        YDR392W SPT3; transcriptional regulator SPT3	K11313 SUPT3H; transcription initiation protein SPT3 
E        YBR081C SPT7; SAGA histone acetyltransferase complex subunit SPT7	K11359 SPT7; transcriptional activator SPT7 
E        YLR055C SPT8; SAGA complex subunit SPT8	K11360 SPT8; transcriptional activator SPT8 
E        YOL148C SPT20; Spt20p	K11361 SPT20; transcription factor SPT20 
E        YPL254W HFI1; Hfi1p	K11362 HFI1; transcriptional coactivator HFI1/ADA1 
E        YDR448W ADA2; chromatin-binding transcription regulator ADA2	K11314 TADA2A; transcriptional adapter 2-alpha 
E        YDR176W NGG1; histone acetyltransferase NGG1	K11315 TADA3; transcriptional adapter 3 
E        YCR042C TAF2; Taf2p	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        YBR198C TAF5; chromatin modification protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        YGL112C TAF6; TATA-binding protein-associated factor TAF6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        YMR227C TAF7; TATA-binding protein-associated factor TAF7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        YMR236W TAF9; chromatin modification protein	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        YDR167W TAF10; Taf10p	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        YDR145W TAF12; Taf12p	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        YPL047W SGF11; SAGA histone acetyltransferase complex subunit SGF11	K11363 SGF11; SAGA-associated factor 11 
E        YCL010C SGF29; Sgf29p	K11364 SGF29; SAGA-associated factor 29 
E        YGL066W SGF73; deubiquitination module subunit SGF73	K11365 SGF73; SAGA-associated factor 73 
E        YER164W CHD1; chromatin-remodeling ATPase CHD1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        YBR111W-A SUS1; Sus1p	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        YMR223W UBP8; ubiquitin-specific protease UBP8	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        YML049C RSE1; U2 snRNP complex subunit RSE1	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        YBR289W SNF5; Snf5p	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      SWI/SNF complex
E        YPL016W SWI1; Swi1p	K11771 SWI1; SWI/SNF chromatin-remodeling complex subunit SWI1 
E        YIL126W STH1; RSC chromatin remodeling complex ATPase subunit STH1	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
E        YOR290C SNF2; SWI/SNF catalytic subunit SNF2	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
E        YBR289W SNF5; Snf5p	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        YJL176C SWI3; Swi3p	K11772 SWI3; SWI/SNF complex subunit SWI3 
E        YHL025W SNF6; Snf6p	K11773 SNF6; SWI/SNF complex component SNF6 
E        YDR073W SNF11; Snf11p	K11774 SNF11; SWI/SNF complex component SNF11 
E        YNR023W SNF12; Snf12p	K11775 SNF12; SWI/SNF complex component SWP73 
E        YFL049W SWP82; Swp82p	K11776 SWP82; SWI/SNF complex component SWP82 
E        YPR034W ARP7; Arp7p	K11767 ARP7; actin-related protein 7 
E        YMR033W ARP9; Arp9p	K11768 ARP9; actin-related protein 9 
E        YPL129W TAF14; TATA-binding protein-associated factor TAF14	K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit 
D      RSC complex
E        YLR357W RSC2; Rsc2p	K11756 RSC1_2; chromatin structure-remodeling complex subunit RSC1/2 
E        YGR056W RSC1; RSC subunit protein RSC1	K11756 RSC1_2; chromatin structure-remodeling complex subunit RSC1/2 
E        YDR303C RSC3; Rsc3p	K11758 RSC3_30; chromatin structure-remodeling complex subunit RSC3/30 
E        YHR056C RSC30; Rsc30p	K11758 RSC3_30; chromatin structure-remodeling complex subunit RSC3/30 
E        YKR008W RSC4; Rsc4p	K11759 RSC4; chromatin structure-remodeling complex subunit RSC4 
E        YCR052W RSC6; Rsc6p	K11760 RSC6; chromatin structure-remodeling complex subunit RSC6 
E        YMR091C NPL6; Npl6p	K11761 NPL6; chromatin structure-remodeling complex protein RSC7 
E        YFR037C RSC8; Rsc8p	K11762 RSC8; chromatin structure-remodeling complex subunit RSC8 
E        YML127W RSC9; Rsc9p	K11763 RSC9; chromatin structure-remodeling complex subunit RSC9 
E        YBL006C LDB7; Ldb7p	K11764 LDB7; chromatin structure-remodeling complex protein RSC14 
E        YLR033W RSC58; Rsc58p	K11766 RSC58; chromatin structure-remodeling complex subunit RSC58 
E        YPR034W ARP7; Arp7p	K11767 ARP7; actin-related protein 7 
E        YMR033W ARP9; Arp9p	K11768 ARP9; actin-related protein 9 
E        YCR020W-B HTL1; Htl1p	K11769 HTL1; chromatin structure-remodeling complex protein HTL1 
E        YLR321C SFH1; Sfh1p	K11770 SFH1; chromatin structure-remodeling complex subunit SFH1 
E        YIL126W STH1; RSC chromatin remodeling complex ATPase subunit STH1	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
E        YOR290C SNF2; SWI/SNF catalytic subunit SNF2	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
D      Others
E        YMR039C SUB1; chromatin-binding transcription coactivator SUB1	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
C    Other transcription-related factors
D      Transcription elongation factors
E        YGL043W DST1; transcription elongation factor DST1	K03145 TFIIS; transcription elongation factor S-II 
E        YGR063C SPT4; transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        YML010W SPT5; transcription elongation factor SPT5	K15172 SUPT5H; transcription elongation factor SPT5 
E        YGR116W SPT6; chromatin-remodeling histone chaperone SPT6	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        YDR228C PCF11; Pcf11p	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        YDR301W CFT1; cleavage/polyadenylation factor CFT1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        YLR277C YSH1; cleavage polyadenylation factor subunit YSH1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        YOR179C SYC1; cleavage polyadenylation factor subunit SYC1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        YPR107C YTH1; cleavage polyadenylation factor RNA-binding subunit YTH1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        YER133W GLC7; type 1 serine/threonine-protein phosphatase catalytic subunit GLC7	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        YDR436W PPZ2; salt homeostasis regulator	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        YML016C PPZ1; salt homeostasis regulator	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        YPL179W PPQ1; protein-serine/threonine phosphatase	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        YAL043C PTA1; RNA-processing protein PTA1	K06100 SYMPK; symplekin 
E        YNL222W SSU72; RNA polymerase II subunit A C-terminal domain phosphatase	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        YOR048C RAT1; ssRNA exonuclease RAT1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        YGL246C RAI1; decapping nuclease	K14845 RAI1; RAT1-interacting protein 
E        YDR289C RTT103; Rtt103p	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        YNL251C NRD1; Nrd1 complex RNA-binding subunit	K15560 NRD1; protein NRD1 
E        YPL190C NAB3; Nab3p	K15561 NAB3; nuclear polyadenylated RNA-binding protein 3 
E        YLR430W SEN1; DNA/RNA helicase SEN1	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
E        YJR017C ESS1; peptidylprolyl isomerase ESS1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        YBR279W PAF1; Paf1p	K15174 PAF1; RNA polymerase II-associated factor 1 
E        YLR418C CDC73; Cdc73p	K15175 CDC73; parafibromin 
E        YOL145C CTR9; Ctr9p	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        YOR123C LEO1; Leo1p	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        YGL244W RTF1; Rtf1p	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
D      BUR kinase complex
E        YPR161C SGV1; cyclin-dependent serine/threonine protein kinase SGV1	K15562 BUR1; serine/threonine-protein kinase BUR1 [EC:2.7.11.22 2.7.11.23] 
E        YLR226W BUR2; Bur2p	K15563 BUR2; protein BUR2 
D      CTDK-I complex
E        YKL139W CTK1; cyclin-dependent serine/threonine protein kinase CTK1	K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23] 
E        YJL006C CTK2; Ctk2p	K15564 CTK2; CTD kinase subunit beta 
E        YML112W CTK3; Ctk3p	K15565 CTK3; CTD kinase subunit gamma 
D      7SK RNP complex
D      DBIRD complex
D      Others
E        YPL082C MOT1; DNA-binding ATPase	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        YDR397C NCB2; negative cofactor 2 transcription regulator complex subunit NCB2	K21751 DR1; down-regulator of transcription 1 
E        YER159C BUR6; negative cofactor 2 transcription regulator complex subunit BUR6	K21752 DRAP1; Dr1-associated corepressor 
E        YER161C SPT2; Spt2p	K15193 SPTY2D1; protein SPT2 
E        YMR277W FCP1; protein serine/threonine phosphatase	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        YLR019W PSR2; putative phosphatase	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        YLL010C PSR1; phosphatase	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        YPR133C SPN1; Spn1p	K17498 SPN1; transcription factor SPN1 
E        YDR527W RBA50; Rba50p	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        YDR066C RTR2; putative protein-serine/threonine phosphatase	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        YER139C RTR1; RNA polymerase II subunit B1 CTD phosphatase RTR1	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        YCR084C TUP1; chromatin-silencing transcriptional regulator TUP1	K06666 TUP1; general transcriptional corepressor TUP1 
E        YBR112C CYC8; transcription regulator CYC8	K06665 SSN6; general transcriptional corepressor CYC8 
E        YMR043W MCM1; transcription factor MCM1	K12412 MCM1; pheromone receptor transcription factor 
E        YLR243W GPN3; putative signal sequence-binding GTPase GPN3	K24104 GPN; GPN-loop GTPase 
E        YOR262W GPN2; putative GTPase GPN2	K24104 GPN; GPN-loop GTPase 
E        YJR072C NPA3; GTPase NPA3	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        YOR116C RPO31; DNA-directed RNA polymerase III core subunit RPO31	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        YOR207C RET1; DNA-directed RNA polymerase III core subunit RET1	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        YPR110C RPC40; DNA-directed RNA polymerase core subunit RPC40	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        YNL113W RPC19; DNA-directed RNA polymerase core subunit RPC19	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        YPR190C RPC82; DNA-directed RNA polymerase III subunit C82	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        YDL150W RPC53; DNA-directed RNA polymerase III subunit C53	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        YKR025W RPC37; DNA-directed RNA polymerase III subunit C37	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        YNR003C RPC34; DNA-directed RNA polymerase III subunit C34	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        YNL151C RPC31; DNA-directed RNA polymerase III subunit C31	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        YKL144C RPC25; DNA-directed RNA polymerase III subunit RPC25	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        YJL011C RPC17; DNA-directed RNA polymerase III subunit RPC17	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        YDR045C RPC11; DNA-directed RNA polymerase III core subunit RPC11	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        YBR154C RPB5; DNA-directed RNA polymerase core subunit RPB5	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        YPR187W RPO26; DNA-directed RNA polymerase core subunit RPO26	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        YOR224C RPB8; DNA-directed RNA polymerase core subunit RPB8	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        YHR143W-A RPC10; DNA-directed RNA polymerase core subunit RPC10	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        YOR210W RPB10; DNA-directed RNA polymerase core subunit RPB10	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        YPR186C PZF1; Pzf1p	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        YER148W SPT15; TATA-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        YGR246C BRF1; transcription factor TFIIIB subunit BRF1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        YNL039W BDP1; transcription factor TFIIIB subunit BDP1	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        YGR047C TFC4; transcription factor TFIIIC subunit TFC4	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        YBR123C TFC1; transcription factor TFIIIC subunit TFC1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
D      TFIIIC, fungi type
E        YBR123C TFC1; transcription factor TFIIIC subunit TFC1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        YAL001C TFC3; transcription factor TFIIIC subunit TFC3	K15204 TFC3; transcription factor C subunit 3 
E        YGR047C TFC4; transcription factor TFIIIC subunit TFC4	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        YDR362C TFC6; transcription factor TFIIIC subunit TFC6	K15205 TFC6; transcription factor C subunit 6 
E        YOR110W TFC7; transcription factor TFIIIC subunit TFC7	K15206 TFC7; transcription factor C subunit 7 
E        YNL108C HUF; uncharacterized protein	K15206 TFC7; transcription factor C subunit 7 
E        YPL007C TFC8; transcription factor TFIIIC subunit TFC8	K15207 TFC8; transcription factor C subunit 8 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
D      Octamer transcription factors
D      Others
E        YDR005C MAF1; RNA polymerase III-inhibiting protein MAF1	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        YOR341W RPA190; DNA-directed RNA polymerase I core subunit RPA190	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        YPR010C RPA135; DNA-directed RNA polymerase I core subunit RPA135	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        YPR110C RPC40; DNA-directed RNA polymerase core subunit RPC40	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        YNL113W RPC19; DNA-directed RNA polymerase core subunit RPC19	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        YNL248C RPA49; DNA-directed RNA polymerase I subunit RPA49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        YOR340C RPA43; DNA-directed RNA polymerase I subunit RPA43	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        YJL148W RPA34; DNA-directed RNA polymerase I subunit RPA34	K03003 RPA34; DNA-directed RNA polymerase I subunit RPA34 
E        YJR063W RPA12; DNA-directed RNA polymerase I core subunit RPA12	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
E        YDR156W RPA14; DNA-directed RNA polymerase I subunit RPA14	K03001 RPA14; DNA-directed RNA polymerase I subunit RPA14 
D      Pol I, II, III common subunits
E        YBR154C RPB5; DNA-directed RNA polymerase core subunit RPB5	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        YPR187W RPO26; DNA-directed RNA polymerase core subunit RPO26	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        YOR224C RPB8; DNA-directed RNA polymerase core subunit RPB8	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        YHR143W-A RPC10; DNA-directed RNA polymerase core subunit RPC10	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        YOR210W RPB10; DNA-directed RNA polymerase core subunit RPB10	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        YER148W SPT15; TATA-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        YKL125W RRN3; rDNA-binding RNA polymerase I transcriptional factor	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        YLR141W RRN5; Rrn5p	K15217 RRN5; RNA polymerase I-specific transcription initiation factor RRN5 
E        YBL014C RRN6; Rrn6p	K15218 RRN6; RNA polymerase I-specific transcription initiation factor RRN6 
E        YJL025W RRN7; Rrn7p	K15219 RRN7; RNA polymerase I-specific transcription initiation factor RRN7 
E        YMR270C RRN9; Rrn9p	K15220 RRN9; RNA polymerase I-specific transcription initiation factor RRN9 
E        YBL025W RRN10; Rrn10p	K15221 RRN10; RNA polymerase I-specific transcription initiation factor RRN10 
E        YML043C RRN11; Rrn11p	K15222 RRN11; RNA polymerase I-specific transcription initiation factor RRN11 
E        YMR233W TRI1; Tri1p	K15223 UAF30; upstream activation factor subunit UAF30 
E        YOR295W UAF30; Uaf30p	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        YGR063C SPT4; transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        YML010W SPT5; transcription elongation factor SPT5	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        YBR245C ISW1; chromatin-remodeling ATPase ISW1	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        YOR304W ISW2; DNA translocase	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
E        YKL139W CTK1; cyclin-dependent serine/threonine protein kinase CTK1	K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23] 
E        YJL006C CTK2; Ctk2p	K15564 CTK2; CTD kinase subunit beta 
E        YML112W CTK3; Ctk3p	K15565 CTK3; CTD kinase subunit gamma 
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        YPR086W SUA7; transcription factor TFIIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        YKL028W TFA1; transcription factor TFIIE subunit TFA1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 9, 2024