+D Messenger RNA Biogenesis KO #

  Prokaryotic Defense System - Salmonella enterica subsp. enterica serovar Newport SL254

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ACRISPR-Cas system B Universal Cas proteins C SNSL254_A3148 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 C SNSL254_A3147 cas2; CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 B Type I CRISPR-Cas system C Type I signiture cas proteins C Subtype I-A factors C Subtype I-B factors C Subtype I-C factors C Subtype I-D factors C Subtype I-E factors D SNSL254_A3153 cse1; CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA D SNSL254_A3152 cse2; CRISPR-associated protein, Cse2 family K19046 casB; CRISPR system Cascade subunit CasB D SNSL254_A3151 cse4; CRISPR-associated protein, Cse4 family K19124 casC; CRISPR system Cascade subunit CasC D SNSL254_A3150 cas5e; crispr-associated protein Cas5, ecoli subtype K19125 casD; CRISPR system Cascade subunit CasD D SNSL254_A3149 cse; crispr-associated protein, Cse3 family K19126 casE; CRISPR system Cascade subunit CasE C Subtype I-F factors C Subtype I-U factors B Type II CRISPR-Cas system C Type II signiture cas proteins C Subtype II-A factors C Subtype II-B factors B Type III CRISPR-Cas system C Type III signiture cas proteins C Subtype III-A factors C Subtype III-B factors C Subtype III-U factors # ARestriction and modification system (R-M system) B Type I R-M system C SNSL254_A4882 type I restriction enzyme EcoEI R protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C SNSL254_A4880 putative type I restriction-modification system, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C SNSL254_A4881 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] B Type II R-M system C Restriction endonucleases C DNA methyltransferases D SNSL254_A2942 retron EC67 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D SNSL254_A3756 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D SNSL254_A3650 DNA methylase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D SNSL254_A2155 modification methylase EcoRII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D SNSL254_p_0125 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D SNSL254_p_0058 C-5 cytosine-specific DNA methylase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] B Type III R-M system C SNSL254_A0398 type III restriction-modification system StyLTI enzyme res K01156 res; type III restriction enzyme [EC:3.1.21.5] C SNSL254_A0397 type III restriction-modification system StyLTI enzyme mod K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] B Type IV R-M system # AToxin-antitoxin system (TA system) B Type I TA system C Hok-Sok C SymE-SymR D SNSL254_A0325 conserved hypothetical protein K19048 symE; toxic protein SymE D SNSL254_A4879 endoribonuclease SymE K19048 symE; toxic protein SymE C Ldr-Rdl C TisB-IstR C Ibs-Sib D SNSL254_A2310 QUAD RNA K18864 sibA; sRNA antisense regulator of IbsA protein D SNSL254_A3459 QUAD RNA K18868 sibD; sRNA antisense regulator of IbsD protein C ShoB-OhsC C RalR-RalA B Type II TA system C MazF-MazE D SNSL254_B0005 conserved hypothetical protein K07172 mazE; antitoxin MazE C ChpB-ChpS C YhaV-PrlF C RelE/StbE-RelB/StbD D SNSL254_A4796 putative stability protein StbE K06218 relE; mRNA interferase RelE/StbE D SNSL254_A4795 conserved domain protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB C YafQ-dinJ C YoeB-YefM C HipA-HipB C HicA-HicB C YafO-YafN C Hha-TomB D SNSL254_A0523 haemolysin expression modulating protein K05839 hha; haemolysin expression modulating protein D SNSL254_A0524 conserved hypothetical protein K19162 tomB; hha toxicity modulator TomB C PspC-PspB D SNSL254_A1812 pspC; phage shock protein C K03973 pspC; phage shock protein C D SNSL254_A1813 pspB; phage shock protein B K03970 pspB; phage shock protein B C CcdB-CcdA C ParE-ParD C Doc-Phd D SNSL254_A3827 death on curing protein K07341 doc; death on curing protein D SNSL254_A3828 addiction module antitoxin, Axe family K19165 phd; antitoxin Phd C HigB-HigA D SNSL254_A4309 Sea40 K19166 higB; mRNA interferase HigB [EC:3.1.-.-] D SNSL254_A4308 Sea41 K18831 higA; HTH-type transcriptional regulator / antitoxin HigA C MqsR-MqsA C VapC-VapB D SNSL254_A3267 putative virulence-associated protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] C PezT-PezA C YobL-YobK C YokI-YokJ C YqcG-YqcF C YxiD-YxxD C FitB-FitA C BC_0920-BC_0921 C Type II TA system related factors D SNSL254_A4816 putative cytoplasmic protein K19334 tabA; biofilm protein TabA D SNSL254_A1258 conserved hypothetical protein K12148 bssS; biofilm regulator BssS D SNSL254_A0922 biofilm regulator BssR K19688 bssR; biofilm regulator BssR D SNSL254_A1313 protein YcfR K12151 bhsA; multiple stress resistance protein BhsA D SNSL254_A0145 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D SNSL254_A3637 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D SNSL254_A3430 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D SNSL254_A3439 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D SNSL254_A2607 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] B Type III TA system C AbiQ system B Type IV TA system C YeeV-YeeU C CptA-CptB D SNSL254_A3280 putative inner membrane protein K19168 cptA; toxin CptA D SNSL254_A3282 TPR repeat protein K09159 cptB; antitoxin CptB B Type V TA system C GhoT-GhoS # ADNA phosphothiolation system B Sulfur modification proteins C SNSL254_A2742 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C SNSL254_p_0129 conserved hypothetical protein K19170 dndC; DNA sulfur modification protein DndC B DNA phosphorothioation-dependent restriction proteins ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023