+D Messenger RNA Biogenesis KO
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Prokaryotic Defense System - Salmonella enterica subsp. enterica serovar Newport SL254
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ACRISPR-Cas system
B Universal Cas proteins
C SNSL254_A3148 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
C SNSL254_A3147 cas2; CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
B Type I CRISPR-Cas system
C Type I signiture cas proteins
C Subtype I-A factors
C Subtype I-B factors
C Subtype I-C factors
C Subtype I-D factors
C Subtype I-E factors
D SNSL254_A3153 cse1; CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA
D SNSL254_A3152 cse2; CRISPR-associated protein, Cse2 family K19046 casB; CRISPR system Cascade subunit CasB
D SNSL254_A3151 cse4; CRISPR-associated protein, Cse4 family K19124 casC; CRISPR system Cascade subunit CasC
D SNSL254_A3150 cas5e; crispr-associated protein Cas5, ecoli subtype K19125 casD; CRISPR system Cascade subunit CasD
D SNSL254_A3149 cse; crispr-associated protein, Cse3 family K19126 casE; CRISPR system Cascade subunit CasE
C Subtype I-F factors
C Subtype I-U factors
B Type II CRISPR-Cas system
C Type II signiture cas proteins
C Subtype II-A factors
C Subtype II-B factors
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
C Subtype III-B factors
C Subtype III-U factors
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ARestriction and modification system (R-M system)
B Type I R-M system
C SNSL254_A4882 type I restriction enzyme EcoEI R protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
C SNSL254_A4880 putative type I restriction-modification system, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C SNSL254_A4881 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
B Type II R-M system
C Restriction endonucleases
C DNA methyltransferases
D SNSL254_A2942 retron EC67 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SNSL254_A3756 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SNSL254_A3650 DNA methylase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D SNSL254_A2155 modification methylase EcoRII K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SNSL254_p_0125 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SNSL254_p_0058 C-5 cytosine-specific DNA methylase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Type III R-M system
C SNSL254_A0398 type III restriction-modification system StyLTI enzyme res K01156 res; type III restriction enzyme [EC:3.1.21.5]
C SNSL254_A0397 type III restriction-modification system StyLTI enzyme mod K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
B Type IV R-M system
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AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
C SymE-SymR
D SNSL254_A0325 conserved hypothetical protein K19048 symE; toxic protein SymE
D SNSL254_A4879 endoribonuclease SymE K19048 symE; toxic protein SymE
C Ldr-Rdl
C TisB-IstR
C Ibs-Sib
D SNSL254_A2310 QUAD RNA K18864 sibA; sRNA antisense regulator of IbsA protein
D SNSL254_A3459 QUAD RNA K18868 sibD; sRNA antisense regulator of IbsD protein
C ShoB-OhsC
C RalR-RalA
B Type II TA system
C MazF-MazE
D SNSL254_B0005 conserved hypothetical protein K07172 mazE; antitoxin MazE
C ChpB-ChpS
C YhaV-PrlF
C RelE/StbE-RelB/StbD
D SNSL254_A4796 putative stability protein StbE K06218 relE; mRNA interferase RelE/StbE
D SNSL254_A4795 conserved domain protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
C YafQ-dinJ
C YoeB-YefM
C HipA-HipB
C HicA-HicB
C YafO-YafN
C Hha-TomB
D SNSL254_A0523 haemolysin expression modulating protein K05839 hha; haemolysin expression modulating protein
D SNSL254_A0524 conserved hypothetical protein K19162 tomB; hha toxicity modulator TomB
C PspC-PspB
D SNSL254_A1812 pspC; phage shock protein C K03973 pspC; phage shock protein C
D SNSL254_A1813 pspB; phage shock protein B K03970 pspB; phage shock protein B
C CcdB-CcdA
C ParE-ParD
C Doc-Phd
D SNSL254_A3827 death on curing protein K07341 doc; death on curing protein
D SNSL254_A3828 addiction module antitoxin, Axe family K19165 phd; antitoxin Phd
C HigB-HigA
D SNSL254_A4309 Sea40 K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D SNSL254_A4308 Sea41 K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
C MqsR-MqsA
C VapC-VapB
D SNSL254_A3267 putative virulence-associated protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C PezT-PezA
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
C BC_0920-BC_0921
C Type II TA system related factors
D SNSL254_A4816 putative cytoplasmic protein K19334 tabA; biofilm protein TabA
D SNSL254_A1258 conserved hypothetical protein K12148 bssS; biofilm regulator BssS
D SNSL254_A0922 biofilm regulator BssR K19688 bssR; biofilm regulator BssR
D SNSL254_A1313 protein YcfR K12151 bhsA; multiple stress resistance protein BhsA
D SNSL254_A0145 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D SNSL254_A3637 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D SNSL254_A3430 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SNSL254_A3439 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SNSL254_A2607 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
D SNSL254_A3280 putative inner membrane protein K19168 cptA; toxin CptA
D SNSL254_A3282 TPR repeat protein K09159 cptB; antitoxin CptB
B Type V TA system
C GhoT-GhoS
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ADNA phosphothiolation system
B Sulfur modification proteins
C SNSL254_A2742 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C SNSL254_p_0129 conserved hypothetical protein K19170 dndC; DNA sulfur modification protein DndC
B DNA phosphorothioation-dependent restriction proteins
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023