+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D SSPA0269 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D SSPA3870 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C SSPA0270 GTP-binding protein K03595 era; GTPase C SSPA2956 probable GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C SSPA0188 dosage-dependent dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor C SSPA2945 L factor K02600 nusA; transcription termination/antitermination protein NusA C SSPA2147 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB C SSPA3701 transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D SSPA0589 ribosomal small subunit pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D SSPA0087 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D SSPA3054 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SSPA4056 conserved hypothetical protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D SSPA3194 conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D SSPA2756 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D SSPA0954 conserved hypothetical protein K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178] D SSPA3467 glucose inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D SSPA0118 conserved hypothetical protein K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D SSPA2924 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D SSPA3222 conserved hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D SSPA0968 rRNA guanine-N1-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D SSPA3885 probable tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D SSPA2952 cell division protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D SSPA1796 putative SAM-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D SSPA2884 conserved hypothetical protein K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D SSPA1945 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D SSPA1643 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D SSPA3226 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D SSPA1662 conserved hypothetical protein K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D SSPA2650 conserved hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D SSPA0322 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D SSPA2629 putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D SSPA1750 hypothetical RNA methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D SSPA0092 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D SSPA1076 putative pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D SSPA1547 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D SSPA2348 ftsH suppressor protein SfhB K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D SSPA1498 putative ribosomal large subunit pseudouridine synthase B K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D SSPA3740 putative pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D SSPA0255 putative RNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] B ribosomal protein modification factors C SSPA4058 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C SSPA1566 ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C SSPA1757 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C SSPA1167 ribosomal-protein-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] C SSPA2359 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM C SSPA1773 conserved hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C SSPA1695 conserved hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C SSPA3036 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C SSPA0443 conserved hypothetical protein K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C SSPA1506 conserved hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C SSPA0269 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C SSPA1548 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C SSPA3023 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C SSPA2759 conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C SSPA1140 ATP-dependent RNA helicase, stimulated by 23S rRNA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] C SSPA2938 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C SSPA0260 ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] B GTPases C SSPA0270 GTP-binding protein K03595 era; GTPase C SSPA3869 putative membrane protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C SSPA0328 putative GTP-binding protein K03977 engA; GTPase C SSPA2956 probable GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] C SSPA3879 HflX protein, putative GTP-binding protein K03665 hflX; GTPase B Other maturation factors C SSPA3048 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C SSPA3357 guanosine-3'; CG Site No. 156 K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C SSPA2943 ribosome-binding factor A (P15B protein) K02834 rbfA; ribosome-binding factor A C SSPA2946 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP C SSPA2030 conserved hypothetical protein K14761 rlbA; ribosome-associated protein C SSPA1944 conserved hypothetical protein K09710 ybeB; ribosome-associated protein C SSPA1925 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor C SSPA2953 conserved hypothetical protein K07574 yhbY; RNA-binding protein C SSPA3305 conserved hypothetical protein K14762 yibL; ribosome-associated protein C SSPA3935 conserved hypothetical protein K09889 yjgA; ribosome-associated protein C SSPA1657 ribosome modulation factor (protein E) K03812 rmf; ribosome modulation factor C SSPA2976 probable sigma(54) modulation protein K05808 hpf; ribosome hibernation promoting factor C SSPA2350 putative sigma(54) modulation protein K05809 raiA; ribosome-associated inhibitor A C SSPA1211 30S ribosomal protein S22 K02972 sra; stationary-phase-induced ribosome-associated protein C SSPA1016 putative ATP/GTP-binding protein K06942 ychF; ribosome-binding ATPase C SSPA1545 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024