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Mitochondrial Biogenesis - Ruegeria sp. TM1040
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AMitochondrial DNA transcription, translation, and replication factors
B Mitochondrial DNA-encoded proteins
C Mitochondrial respiratory chain complex I
C Mitochondrial respiratory chain complex III
D TM1040_2813 cytochrome b/b6-like protein K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
C Cytochrome c oxidase
C F-type ATPase
B Mitochondrial transcription and translation factors
C Mitochondrial RNA polymerase
C Mitochondrial transcription factors
C Mitochondrial translation factors
D TM1040_2912 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2
D TM1040_1763 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D TM1040_1211 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D TM1040_2434 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D TM1040_0242 translation elongation factor Tu K02358 tuf; elongation factor Tu
D TM1040_0241 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
C RNase MRP
C Mitochondrial ribonuclease P
C Other mitochondrial DNA transcription and translation factors
D TM1040_0573 helicase-like protein K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6]
D TM1040_2558 GTP-binding protein Era K03595 era; GTPase
D TM1040_0923 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TM1040_0045 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TM1040_0635 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TM1040_0903 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TM1040_1918 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D TM1040_0058 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D TM1040_0327 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D TM1040_0701 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D TM1040_1919 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
B Mitochondrial DNA replication factors
C Mitochondrial DNA polymerase
C Mitochondrial DNA maintenance factors
C Other Mitochondrial DNA replication factors
D TM1040_1425 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D TM1040_1676 ssb; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D TM1040_0796 ssb; Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
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AMitochondrial protein import machinery
B Endoplasmic reticulum membrane and cytosol
C ER-mitochondria encounter structure (ERMES) complex
C Other ER-memrane and cytosol factors
B Outer membrane
C Transporter outer membrane (TOM) complex
C TOB/SAM complex
D TM1040_1407 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
C Porin
C ERMES complex
C Other outer membrane factor
B Inter membrane space
C Transporter inner membrane (TIM) 9/10 complex
C TIM8/13 complex
C Mitochondrial intermembrane space assembly (MIA) complex
B Inner mambrane
C MICOS complex
C MICOS complex (yeast)
C TIM22 complex
C TIM23 complex
C Mitochondrial calcium uniporter complex
C Other inner membrane factors
B Matrix
C MMC/PAM proteins
D TM1040_0010 Chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D TM1040_2874 GrpE protein K03687 GRPE; molecular chaperone GrpE
C Other matrix factors
D TM1040_0597 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D TM1040_0596 chaperonin Cpn10 K04078 groES; chaperonin GroES
D TM1040_0009 Chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
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AMitochondrial quality control factors
B Regulator of mitochondrial biogenesis
C Ubiquitas transcription factors
D TM1040_0241 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
C Nuclear respiratory factors
C Coactivators
C Proteins involved in Fe-S cluster biogenesis
D TM1040_1241 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TM1040_0010 Chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D TM1040_1116 Glutaredoxin-related protein K07390 grxD; monothiol glutaredoxin
C Other regulator of mitochondrial biogenesis
B Mitochondrial respiratory chain complex assembly factors
C Complex-I assembly factors
D TM1040_0619 protein of unknown function DUF185 K18164 NDUFAF7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
D TM1040_0395 Mrp/NBP35 family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D TM1040_2022 putative Mrp (multidrug resistance-associated proteins) family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
C Complex-II assembly factors
C Complex-III assembly factors
C Complex-IV assembly factors
D TM1040_2335 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D TM1040_2333 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D TM1040_1335 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D TM1040_0307 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D TM1040_2288 Surfeit locus 1 K14998 SURF1; surfeit locus 1 family protein
D TM1040_2331 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein
D TM1040_2839 senC; SCO2 protein K07152 SCO1; protein SCO1
C Complex-V assembly factors
B Mitochondrial dynamics
C Fission and Fusion factors
C Actin cytoskeleton organization
C Mitochondrial movement
C Retention of mitochondria
C Morphogenesis factors
B Mitophagy factors
C Autophagy-related proteins
C Parkin-dependent mechanism factors
C Parkin-independent mechanism factors
C Other mitophagy factors
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 14, 2024