+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Sinorhizobium meliloti 1021

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D SMc02652 rnc; Probable ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C SMc02651 era; Probable GTP-binding protein K03595 era; GTPase C SMc03775 cgtA; Putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C SMc00469 dksA; Putative DnaK suppresor protein K06204 dksA; RNA polymerase-binding transcription factor C SMc02912 nusA; Probable N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA C SMc01778 nusB; Putative N utilization substance protein B K03625 nusB; transcription antitermination protein NusB C SMc01322 nusG; Probable transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D SMc00579 ksgA; Putative dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D SMc04090 sun; Hypothetical Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SMc00403 sun2; probable Sun protein (FMU protein), (ribosomal RNA small subunit methyltransferase B, rRNA (cytosine-C(5)-)-methyltransferase) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SMc00325 rsmC; Probable ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D SMc00902 Conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D SMc00826 Conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D SMc02799 gidB; Probable glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D SMc01858 mraW; Probable SAM-dependent methytransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D SMc00416 Probable tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D SMc00973 Probable hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D SMc01327 Putative tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D SMc00811 ftsJ; Probable cell division protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D SMc03781 Conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D SMc01131 Probable SAM dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D SMc00608 Conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D SMc03831 Conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D SMc00973 Probable hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D SMc00974 Putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D SMc00904 Hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D SM_b20024 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D SMc01275 rluC; Probable ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D SMc00647 rluD; Putative ribosomal large subunit pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C SMc01117 rimI; Putative acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C SMc00075 rimJ; Probable ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C SMc03860 rimM; Probable 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM C SMc01472 prmA; Putative ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C SMc02652 rnc; Probable ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C SMc01336 rne; Probable ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C SMc01355 Conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C SMc01090 deaD; Putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C SMc02651 era; Probable GTP-binding protein K03595 era; GTPase C SM_b20995 engA; putative GTP-binding protein K03977 engA; GTPase C SMc03775 cgtA; Putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] C SMc01049 hflX; Putative GTP-binding protein K03665 hflX; GTPase B Other maturation factors C SMc00984 Conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C SMc02659 relA; Putative GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C SMc00320 rbfA; Probable ribosome-binding factor A, rRNA processing protein K02834 rbfA; ribosome-binding factor A C SMc02911 Conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP C SMc03780 Hypothetical protein K09710 ybeB; ribosome-associated protein C SMc01113 Conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor C SMc01140 Probable sigma54 modulation protein K05808 hpf; ribosome hibernation promoting factor C SMc02695 engD; Putative GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024