+E Ribosome biogenesis KO
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Ribosome Biogenesis - Sinorhizobium meliloti 1021
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D SMc02652 rnc; Probable ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SMc02651 era; Probable GTP-binding protein K03595 era; GTPase
C SMc03775 cgtA; Putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SMc00469 dksA; Putative DnaK suppresor protein K06204 dksA; RNA polymerase-binding transcription factor
C SMc02912 nusA; Probable N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C SMc01778 nusB; Putative N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C SMc01322 nusG; Probable transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SMc00579 ksgA; Putative dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SMc04090 sun; Hypothetical Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SMc00403 sun2; probable Sun protein (FMU protein), (ribosomal RNA small subunit methyltransferase B, rRNA (cytosine-C(5)-)-methyltransferase) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SMc00325 rsmC; Probable ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D SMc00902 Conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SMc00826 Conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SMc02799 gidB; Probable glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SMc01858 mraW; Probable SAM-dependent methytransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SMc00416 Probable tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SMc00973 Probable hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D SMc01327 Putative tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SMc00811 ftsJ; Probable cell division protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D SMc03781 Conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SMc01131 Probable SAM dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SMc00608 Conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D SMc03831 Conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SMc00973 Probable hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D SMc00974 Putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SMc00904 Hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SM_b20024 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SMc01275 rluC; Probable ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D SMc00647 rluD; Putative ribosomal large subunit pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C SMc01117 rimI; Putative acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C SMc00075 rimJ; Probable ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C SMc03860 rimM; Probable 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C SMc01472 prmA; Putative ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C SMc02652 rnc; Probable ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SMc01336 rne; Probable ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C SMc01355 Conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C SMc01090 deaD; Putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C SMc02651 era; Probable GTP-binding protein K03595 era; GTPase
C SM_b20995 engA; putative GTP-binding protein K03977 engA; GTPase
C SMc03775 cgtA; Putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C SMc01049 hflX; Putative GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C SMc00984 Conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SMc02659 relA; Putative GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SMc00320 rbfA; Probable ribosome-binding factor A, rRNA processing protein K02834 rbfA; ribosome-binding factor A
C SMc02911 Conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C SMc03780 Hypothetical protein K09710 ybeB; ribosome-associated protein
C SMc01113 Conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C SMc01140 Probable sigma54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C SMc02695 engD; Putative GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024