+D
#
Transfer RNA Biogenesis - Sinorhizobium meliloti 2011
%
!
AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D SM2011_c00606 Putative ribonuclease K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D SM2011_c02819 Putative ribonuclease K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D SM2011_c03172 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SM2011_c01934 proS; putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SM2011_c00908 ileS; putative isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SM2011_c02804 leuS; putative leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SM2011_c01192 metG; putative methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SM2011_c02073 argS; putative arginyl-tRNA synthetase (arginine--tRNA ligase) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SM2011_c03173 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SM2011_c01756 aspS; putative aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D SM2011_c00475 alaS; Alanyl-tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SM2011_c01010 thrS; putative threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SM2011_c02064 serS; putative seryl-tRNA synthetase (serine--tRNA ligase) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SM2011_c02551 cysS; putative cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SM2011_c02080 valS; putative valyl-tRNA synthetase (valine--tRNA ligase) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SM2011_c00919 hisS; putative histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SM2011_c00365 pheS; putative phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SM2011_c00366 pheT; putative phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SM2011_c00526 tyrS; putative tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SM2011_c01121 trpS; putative tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D SM2011_c01173 alaS2; putative alanyl-tRNA synthetase K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
C AARS associated factors
D SM2011_c02106 Histidine triad (HIT) family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D SM2011_c01108 trmB; Putative tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D SM2011_c01099 truA; putative tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SM2011_c00321 truB; putative tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D SM2011_c00529 nifS; Putative cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D SM2011_c00984 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SM2011_c01435 miaA; putative tRNA delta2-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SM2011_c02797 mnmE; putative tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SM2011_c02798 mnmG; putative tRNA uridine 5-carboxymethylaminomethyl modification enzyme K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SM2011_a0028 selD; selenide,water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D SM2011_b21225 Inositol-phosphate phosphatase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D SM2011_c01952 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D SM2011_c01720 rnpA; putative ribonuclease P protein component (protein C5) K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D SM2011_c07091 putative ncRNA K01978 rnpB; M1 RNA
D SM2011_c06712 rnpB; Ribozyme RNAseP K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D SM2011_c01144 rph; putative ribonuclease PH protein K00989 rph; ribonuclease PH [EC:2.7.7.56]
D SM2011_c00342 rnd2; Putative ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D SM2011_c00622 rnd1; putative ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D SM2011_c00606 Putative ribonuclease K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D SM2011_c02819 Putative ribonuclease K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
D SM2011_c03835 ligT; Putative 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D SM2011_c02804 leuS; putative leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SM2011_c01934 proS; putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D SM2011_c00526 tyrS; putative tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SM2011_c01121 trpS; putative tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SM2011_c01010 thrS; putative threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SM2011_c00908 ileS; putative isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SM2011_c03173 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SM2011_c00475 alaS; Alanyl-tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SM2011_c02080 valS; putative valyl-tRNA synthetase (valine--tRNA ligase) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SM2011_c01192 metG; putative methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SM2011_c02064 serS; putative seryl-tRNA synthetase (serine--tRNA ligase) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SM2011_c01756 aspS; putative aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SM2011_c00855 glyQ; putative glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SM2011_c00851 glyS; putative glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SM2011_c02551 cysS; putative cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SM2011_c03172 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SM2011_c02073 argS; putative arginyl-tRNA synthetase (arginine--tRNA ligase) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SM2011_c00365 pheS; putative phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SM2011_c00366 pheT; putative phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SM2011_c00919 hisS; putative histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SM2011_c00735 Putative glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D SM2011_c00385 hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D SM2011_c03800 Hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D SM2011_c01705 hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D SM2011_c01173 alaS2; putative alanyl-tRNA synthetase K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D SM2011_c00905 tadA; Putative tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D SM2011_c04235 hypothetical protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D SM2011_c01041 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D SM2011_c01115 miaB; putative tRNA-i(6)A37 modification enzyme,2-methylthioadenine synthetase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D SM2011_c03855 hypothetical protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
C Methyltransferases
D SM2011_a2347 hypothetical protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D SM2011_b20238 Putative methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D SM2011_c00482 trmJ; Putative tRNA (cytidine/uridine-2-O)-methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D SM2011_c02053 trmFO; Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D SM2011_c01108 trmB; Putative tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D SM2011_c03861 trmD; putative tRNA guanine-N1-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D SM2011_c02797 mnmE; putative tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SM2011_c00184 Putative tRNA/rRNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D SM2011_c01130 putative RNA methyltransferase,TrmH family K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D SM2011_c01099 truA; putative tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SM2011_c00321 truB; putative tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D SM2011_c00659 trmU; Putative tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SM2011_c00534 ttcA; Putative tRNA 2-thiocytidine biosynthesis protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D SM2011_c00688 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D SM2011_c00301 sufA; Putative FeS assembly scaffold protein K13628 iscA; iron-sulfur cluster assembly protein
D SM2011_c00529 nifS; Putative cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SM2011_c02558 hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D SM2011_c02798 mnmG; putative tRNA uridine 5-carboxymethylaminomethyl modification enzyme K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SM2011_c01435 miaA; putative tRNA delta2-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SM2011_c01207 queA; putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase(queuosine biosynthesis protein QueA) K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D SM2011_b20940 exsB; Queuosine biosynthesis protein,probable succinoglycan biosynthesis regulator K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D SM2011_b20939 exsC; 6-pyruvoyltetrahydropterin synthase,queuosine biosynthesis protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D SM2011_b20938 exsD; putative queuosine biosynthesis protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D SM2011_c02723 queF; putative NADPH-dependent 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D SM2011_c00406 putative iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D SM2011_a0028 selD; selenide,water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D SM2011_c01206 tgt; putative queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D SM2011_c02940 tilS; Putative tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D SM2011_c01118 Putative peptidase K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D SM2011_c00984 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SM2011_c03230 gcp; putative O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
B tRNA degradation factors
C SM2011_c01365 rnr; Putative exoribonuclease II K12573 rnr; ribonuclease R [EC:3.1.13.1]
C SM2011_c00324 pnp; putative polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C SM2011_a0981 ntrR2; NtrR2 PIN domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C SM2011_c00687 Hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C SM2011_c04881 Hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C SM2011_c01521 ntrR1; Repressor of nitrogen fixation genes,negatively autoregulated K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024