+E Transcription factors KO #

  Transcription Factors - Shewanella oneidensis

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D SO_3006 dcm; Lambda phage type II restriction modification system cytosine-5 DNA methyltransferase Dcm K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D SO_3127 multifunctional transcriptional regulator of DNA repair AraC family/DNA glycosylase / 8-oxoguanine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D SO_1533 gcvA; transcriptional activator of glycine metabolism GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SO_2847 transcriptional regulator LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SO_0529 trpI; transcriptional activator of tryptophan biosynthesis TrpI K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SO_4350 ilvY; acetohydroxybutyrate/acetolactate-responsive transcriptional regulator of isoleucine-valine biosynthesis IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D SO_0817 metR; transcription regulator of methionine biosynthesis MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D SO_1338 nhaR; transcriptional activator of osmotic stress protection NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D SO_1328 oxyR; transcriptional regulator of oxidative stress OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D SO_2866 argP; arginine/lysine-responsive transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D SO_2649 cysB; transcriptional activator of cys regulon CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D SO_3460 lldR; transcriptional regulator of L-lactate utilization LldR K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator D SO_3757 transcriptional regulator of bicarbonate utilization LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D SO_2202 hdtR; transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family C LacI family D SO_3516 nagR; transcriptional repressor of N-acetylglucosamine utilization NagR K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D SO_0096 hutC; transcriptional repressor of histidine utilization genes HutC K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D SO_2885 fadR; transcriptional regulator of fatty acid metabolism FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D SO_0423 pdhR; transcriptional repressor of pyruvate metabolism PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D SO_4326 vexR; transcriptional repressor of multidrug/detergent efflux pump VexR K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D SO_4251 slmA; transcriptional repressor of cell division SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D SO_4468 nemR; transcriptional repressor of N-ethylmaleimide reductase NemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D SO_1578 transcriptional repressor of glutathione detoxification K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D SO_3277 transcriptional repressor of RND efflux transporter TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D SO_0198 fabR; transcriptional repressor of fatty acid biosynthesis FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D SO_3799 asnC; asparagine-responsive transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D SO_2305 lrp; leucine-responsive regulatory protein Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SO_4337 transcriptional regulator AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SO_4567 transcriptional regulator AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family D SO_4052 slyA; transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D SO_0977 ohrR; hydroperoxide resistance transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D SO_1687 cueR; copper-responsive transcriptional regulator of copper exporter CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D SO_0443 zntR; zinc and cadmium (II) responsive transcriptional activator ZntR K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA C Fur family D SO_1937 fur; transcriptional repressor of iron homeostasis Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family C CRP/FNR family D SO_0624 crp; cAMP-responsive regulator of catabolite repression Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D SO_2356 fnr; oxygen-responsive transcriptional regulator of anaerobiosis response Fnr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D SO_2263 iscR; transcriptional repressor of iron-sulfur cluster assembly genes IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D SO_0045 nsrR; nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D SO_0532 arsR; arsenite-sensing transcriptional repressor ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D SO_3538 hlyU; transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D SO_0026 transcriptional regulator ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family C Other families D SO_2490 hexR; 2-keto-3-deoxy-6-phosphogluconate-responsive transcriptional regulator of central carbohydrate metabolism HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D SO_0214 birA; bifunctional biotin operon repressor/biotin-[acetyl-CoA-carboxylase] ligase BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D SO_0393 fis; global transcriptional activator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D SO_3419 trpR; transcriptional repressor of aromatic amino acid biosynthesis TrpR K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D SO_2653 ner; Mu phage transcriptional regulator Ner K07724 ner; Ner family transcriptional regulator D SO_A0071 toxin-antitoxin system antidote transcriptional repressor Xre family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D SO_3232 flrA; Sigma54-dependent transcriptional regulator for flagellar biosynthesis FlrA K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D SO_4479 Sigma54 dependent transcriptional regulator with GAF sensory domain Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D SO_3660 Sigma54-dependent transcriptional regulator with PAS sensory domain Fis family K12146 hyfR; hydrogenase-4 transcriptional activator D SO_1774 sdaR; transcriptional repressor of glycerate utilization SdaR K02647 cdaR; carbohydrate diacid regulator D SO_3862 modE; transcriptional repressor of molybdate and molybdenium cofactor metabolism ModE K02019 modE; molybdate transport system regulatory protein D SO_A0068 toxin-antitoxin system antidote transcriptional repressor Xre family K07726 K07726; putative transcriptional regulator D SO_A0185 toxin-antitoxin system antidote transcriptional repressor Xre family K07726 K07726; putative transcriptional regulator D SO_2989 cro; Lambda phage transcriptional repressor of early genes Cro K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D SO_4057 metJ; transcriptional repressor of methionine metabolism MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D SO_3774 putA; bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D SO_1099 bolA; global transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D SO_4755 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SO_A0031 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SO_A0096 parB; plasmid partition protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SO_3194 rfaH; transcriptional antiterminator RfaH K05785 rfaH; transcriptional antiterminator RfaH D SO_0769 argR; arginine-responsive transcriptional repressor of arginine metabolism ArgR K03402 argR; transcriptional regulator of arginine metabolism D SO_1669 tyrR; Sigma54-dependent transcriptional activator of amino acid degradation TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D SO_1878 gcvR; glycine cleavage system transcriptional repressor GcvR K03567 gcvR; glycine cleavage system transcriptional repressor D SO_1806 pspF; Sigma 54-dependent transcriptional activator of phage shock response PspF K03974 pspF; psp operon transcriptional activator D SO_1809 pspC; phage shock protein C PspC K03973 pspC; phage shock protein C D SO_1935 rnk; regulator of nucleoside diphosphate kinase Rnk K06140 rnk; regulator of nucleoside diphosphate kinase D SO_4821 alpA; Mu phage lytic protein AlpA K07733 alpA; prophage regulatory protein D SO_3346 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D SO_0874 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D SO_3470 nrdR; transcriptional repressor of deoxyribonucleotide biosynthesis NrdR K07738 nrdR; transcriptional repressor NrdR D SO_4228 mraZ; protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0