+E Transcription factors KO
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Transcription Factors - Shewanella oneidensis
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D SO_3006 dcm; Lambda phage type II restriction modification system cytosine-5 DNA methyltransferase Dcm K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D SO_3127 multifunctional transcriptional regulator of DNA repair AraC family/DNA glycosylase / 8-oxoguanine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D SO_1533 gcvA; transcriptional activator of glycine metabolism GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SO_2847 transcriptional regulator LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SO_0529 trpI; transcriptional activator of tryptophan biosynthesis TrpI K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SO_4350 ilvY; acetohydroxybutyrate/acetolactate-responsive transcriptional regulator of isoleucine-valine biosynthesis IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D SO_0817 metR; transcription regulator of methionine biosynthesis MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D SO_1338 nhaR; transcriptional activator of osmotic stress protection NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D SO_1328 oxyR; transcriptional regulator of oxidative stress OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D SO_2866 argP; arginine/lysine-responsive transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D SO_2649 cysB; transcriptional activator of cys regulon CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D SO_3460 lldR; transcriptional regulator of L-lactate utilization LldR K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator
D SO_3757 transcriptional regulator of bicarbonate utilization LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D SO_2202 hdtR; transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
C LacI family
D SO_3516 nagR; transcriptional repressor of N-acetylglucosamine utilization NagR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D SO_0096 hutC; transcriptional repressor of histidine utilization genes HutC K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D SO_2885 fadR; transcriptional regulator of fatty acid metabolism FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D SO_0423 pdhR; transcriptional repressor of pyruvate metabolism PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D SO_4326 vexR; transcriptional repressor of multidrug/detergent efflux pump VexR K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D SO_4251 slmA; transcriptional repressor of cell division SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D SO_4468 nemR; transcriptional repressor of N-ethylmaleimide reductase NemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D SO_1578 transcriptional repressor of glutathione detoxification K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D SO_3277 transcriptional repressor of RND efflux transporter TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D SO_0198 fabR; transcriptional repressor of fatty acid biosynthesis FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D SO_3799 asnC; asparagine-responsive transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D SO_2305 lrp; leucine-responsive regulatory protein Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SO_4337 transcriptional regulator AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SO_4567 transcriptional regulator AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D SO_4052 slyA; transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D SO_0977 ohrR; hydroperoxide resistance transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D SO_1687 cueR; copper-responsive transcriptional regulator of copper exporter CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D SO_0443 zntR; zinc and cadmium (II) responsive transcriptional activator ZntR K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
C Fur family
D SO_1937 fur; transcriptional repressor of iron homeostasis Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
C CRP/FNR family
D SO_0624 crp; cAMP-responsive regulator of catabolite repression Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D SO_2356 fnr; oxygen-responsive transcriptional regulator of anaerobiosis response Fnr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D SO_2263 iscR; transcriptional repressor of iron-sulfur cluster assembly genes IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D SO_0045 nsrR; nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D SO_0532 arsR; arsenite-sensing transcriptional repressor ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D SO_3538 hlyU; transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D SO_0026 transcriptional regulator ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
C PadR family
C Other families
D SO_2490 hexR; 2-keto-3-deoxy-6-phosphogluconate-responsive transcriptional regulator of central carbohydrate metabolism HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D SO_0214 birA; bifunctional biotin operon repressor/biotin-[acetyl-CoA-carboxylase] ligase BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D SO_0393 fis; global transcriptional activator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D SO_3419 trpR; transcriptional repressor of aromatic amino acid biosynthesis TrpR K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D SO_2653 ner; Mu phage transcriptional regulator Ner K07724 ner; Ner family transcriptional regulator
D SO_A0071 toxin-antitoxin system antidote transcriptional repressor Xre family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D SO_3232 flrA; Sigma54-dependent transcriptional regulator for flagellar biosynthesis FlrA K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D SO_4479 Sigma54 dependent transcriptional regulator with GAF sensory domain Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D SO_3660 Sigma54-dependent transcriptional regulator with PAS sensory domain Fis family K12146 hyfR; hydrogenase-4 transcriptional activator
D SO_1774 sdaR; transcriptional repressor of glycerate utilization SdaR K02647 cdaR; carbohydrate diacid regulator
D SO_3862 modE; transcriptional repressor of molybdate and molybdenium cofactor metabolism ModE K02019 modE; molybdate transport system regulatory protein
D SO_A0068 toxin-antitoxin system antidote transcriptional repressor Xre family K07726 K07726; putative transcriptional regulator
D SO_A0185 toxin-antitoxin system antidote transcriptional repressor Xre family K07726 K07726; putative transcriptional regulator
D SO_2989 cro; Lambda phage transcriptional repressor of early genes Cro K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D SO_4057 metJ; transcriptional repressor of methionine metabolism MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D SO_3774 putA; bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D SO_1099 bolA; global transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D SO_4755 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SO_A0031 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SO_A0096 parB; plasmid partition protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SO_3194 rfaH; transcriptional antiterminator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D SO_0769 argR; arginine-responsive transcriptional repressor of arginine metabolism ArgR K03402 argR; transcriptional regulator of arginine metabolism
D SO_1669 tyrR; Sigma54-dependent transcriptional activator of amino acid degradation TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D SO_1878 gcvR; glycine cleavage system transcriptional repressor GcvR K03567 gcvR; glycine cleavage system transcriptional repressor
D SO_1806 pspF; Sigma 54-dependent transcriptional activator of phage shock response PspF K03974 pspF; psp operon transcriptional activator
D SO_1809 pspC; phage shock protein C PspC K03973 pspC; phage shock protein C
D SO_1935 rnk; regulator of nucleoside diphosphate kinase Rnk K06140 rnk; regulator of nucleoside diphosphate kinase
D SO_4821 alpA; Mu phage lytic protein AlpA K07733 alpA; prophage regulatory protein
D SO_3346 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D SO_0874 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D SO_3470 nrdR; transcriptional repressor of deoxyribonucleotide biosynthesis NrdR K07738 nrdR; transcriptional repressor NrdR
D SO_4228 mraZ; protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0