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Transfer RNA Biogenesis - Shewanella oneidensis
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D SO_4599 ribonuclease T2 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D SO_1296 cca; tRNA nucleotidyltransferase Cca K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D SO_3130 gltX; glutamyl-tRNA synthetase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SO_3154 proS; prolyl-tRNA synthetase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SO_3532 ileS; isoleucyl-tRNA synthetase IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SO_1174 leuS; leucyl-tRNA synthetase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SO_2619 metG; methionyl-tRNA synthetase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SO_1786 glnS; glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D SO_4123 argS; arginyl-tRNA synthetase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SO_0992 lysS; lysyl-tRNA synthetase LysS K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SO_2433 aspS; aspartyl-tRNA synthetase AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D SO_3428 alaS; alanyl-tRNA synthetase AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SO_2218 asnS; asparaginyl-tRNA synthetase AsnS K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SO_2299 thrS; threonyl-tRNA synthetase ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SO_2310 serS; seryl-tRNA synthetase SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SO_1791 cysS; cysteinyl-tRNA synthetase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SO_3424 valS; valyl-tRNA synthetase ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SO_3311 hisS; histidyl-tRNA synthetase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SO_2085 pheS; phenylalanyl-tRNA synthetase alpha subunit PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SO_2086 pheT; phenylalanyl-tRNA synthetase beta subunit PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SO_1315 tyrS; tyrosyl-tRNA synthetase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SO_0294 trpS; tryptophanyl-tRNA synthetase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D SO_4398 dtd; D-tyrosyl-tRNA(Tyr) deacylase Dtd K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D SO_2723 hinT; purine nucleoside phosphoramidase HinT K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D SO_3367 trmB; tRNA (guanine-N(7)-)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D SO_3151 yaeB; putative methyltransferase YaeB K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D SO_3068 truA; tRNA pseudouridine38-40 synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SO_1206 truB; tRNA pseudouridine55 synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D SO_3436 truD; tRNA pseudouridine13 synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D SO_2264 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D SO_0037 rimN; threonylcarbamoyladenosine t(6)A tRNA modification protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SO_0602 miaA; tRNA dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SO_0003 mnmE; tRNA uridine 5-carboxymethylaminomethyl modification system GTPase subunit MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SO_4758 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification system MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SO_0196 selD; selenophosphate synthase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D SO_1655 cysQ; 3'(2')5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D SO_0191 cysQ; 3'(2')5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D SO_0006 rnpA; ribonuclease P protein RnpA K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D SO_m001 rnpB; RNaseP RNA K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D SO_2755 rnt; ribonuclease T Rnt K03683 rnt; ribonuclease T [EC:3.1.13.-]
D SO_4256 rph; ribonuclease PH Rph K00989 rph; ribonuclease PH [EC:2.7.7.56]
D SO_2580 rnd; ribonuclease D Rnd K03684 rnd; ribonuclease D [EC:3.1.13.5]
D SO_4599 ribonuclease T2 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D SO_1296 cca; tRNA nucleotidyltransferase Cca K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
D SO_0627 ligT; 2'-5' RNA ligase LigT K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
D SO_3472 yjjK; REG family ATPase YjjK K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D SO_1174 leuS; leucyl-tRNA synthetase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SO_3154 proS; prolyl-tRNA synthetase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D SO_1315 tyrS; tyrosyl-tRNA synthetase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SO_0294 trpS; tryptophanyl-tRNA synthetase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SO_2299 thrS; threonyl-tRNA synthetase ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SO_3532 ileS; isoleucyl-tRNA synthetase IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SO_0992 lysS; lysyl-tRNA synthetase LysS K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SO_3428 alaS; alanyl-tRNA synthetase AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SO_3424 valS; valyl-tRNA synthetase ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SO_2619 metG; methionyl-tRNA synthetase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SO_2310 serS; seryl-tRNA synthetase SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SO_2433 aspS; aspartyl-tRNA synthetase AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SO_0015 glyQ; glycyl-tRNA synthetase alpha subunit GlyQ K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SO_0014 glyS; glycyl-tRNA synthetase beta subunit GlyS K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SO_1791 cysS; cysteinyl-tRNA synthetase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SO_3130 gltX; glutamyl-tRNA synthetase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SO_1786 glnS; glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D SO_4123 argS; arginyl-tRNA synthetase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SO_2085 pheS; phenylalanyl-tRNA synthetase alpha subunit PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SO_2086 pheT; phenylalanyl-tRNA synthetase beta subunit PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SO_3311 hisS; histidyl-tRNA synthetase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SO_2218 asnS; asparaginyl-tRNA synthetase AsnS K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SO_0873 yadB; glutamyl-Q-tRNA-Asp synthetase YadB K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D SO_4398 dtd; D-tyrosyl-tRNA(Tyr) deacylase Dtd K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D SO_1124 ybaK; aminoacyl-tRNA deacylase YbaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D SO_3291 tadA; tRNA-specific adenosine deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D SO_3912 dusA; tRNA2fMet-dihydrouridine21 synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D SO_0394 dusB; tRNA-dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D SO_2006 dusC; tRNA-dihydrouridine synthase C DusC K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
C Methylthiotransferases
D SO_1181 miaB; tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D SO_2435 cmoA; tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase CmoA K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D SO_2436 cmoB; tRNA (5-methoxyuridine) 34 synthase CmoD K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D SO_0558 smtA; SAM-dependent methyltransferase SmtA K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D SO_0206 trmA; tRNA (uracil-5-)-methyltransferase TrmA K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D SO_3367 trmB; tRNA (guanine-N(7)-)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D SO_1359 trmD; tRNA (guanine-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D SO_0003 mnmE; tRNA uridine 5-carboxymethylaminomethyl modification system GTPase subunit MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SO_2261 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D SO_2449 trmK; tRNA (adenine22-N1)-methyltransferase TrmK K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D SO_4529 trmL; tRNA (cytidine34-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D SO_3151 yaeB; putative methyltransferase YaeB K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D SO_0948 yfiC; tRNA (adenine-N(6)-)-methyltransferase YfiC K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
C Psudouridine synthases
D SO_3068 truA; tRNA pseudouridine38-40 synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SO_1206 truB; tRNA pseudouridine55 synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D SO_1620 truC; tRNA pseudouridine65 synthase TruC K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D SO_3436 truD; tRNA pseudouridine13 synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D SO_3118 23S rRNA pseudouridine synthase RluA family K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SO_3798 rluA; 23S rRNA pseudouridine746 synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SO_4181 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SO_4426 tRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
C Thiolation factors
D SO_2633 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SO_2354 ydaO; tRNA(Cytosine32)-2-thiocytidine synthetaseYdaO K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D SO_0019 tusA; tRNA 2-thiouridine synthesizing protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D SO_2868 SirA-like protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D SO_2378 tusB; tRNA 2-thiouridine synthesizing protein B subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D SO_2377 tusC; tRNA 2-thiouridine synthesizing protein C subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D SO_2376 tusD; tRNA 2-thiouridine synthesizing protein D subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D SO_2379 tusE; tRNA 2-thiouridine synthesizing protein sulfur mediator TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D SO_2266 iscA; FeS cluster assembly acessory protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D SO_2264 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SO_0861 ygfZ; folate-dependent protein involved in synthesis and repair of FeS clusters YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D SO_4758 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification system MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SO_0602 miaA; tRNA dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SO_1788 miaE; tRNA-(MS(2)IO(6)A)-hydroxylase MiaE K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D SO_3073 mnmC; bifunctional 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D SO_3114 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D SO_2503 queC; queuosine biosynthesis ATPase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D SO_2501 queE; queuosine biosynthesis radical activating enzyme QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D SO_1608 queF; NADPH-dependent preQ0 reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D SO_3861 yjeS; 4Fe-4S binding protein YjeS K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D SO_0196 selD; selenophosphate synthase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D SO_0195 selU; selenophosphate-dependent tRNA 2-selenouridine synthase SelU K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D SO_3113 tgt; queuine tRNA-ribosyltransferase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D SO_1531 thiI; thiazole biosynthesis/tRNA modification proteinThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D SO_1645 tilS; tRNA(Ile)-lysidine synthase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D SO_2586 yeaZ; YgjD protease YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D SO_0037 rimN; threonylcarbamoyladenosine t(6)A tRNA modification protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SO_1289 ygiD; essential endopeptidase YgiD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D SO_0599 yjeE; ATPase YjeE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D SO_3895 HesA/MoeB/ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
C SO_3935 rnr; 3'-5' exoribonuclease R Rnr K12573 rnr; ribonuclease R [EC:3.1.13.1]
C SO_1209 pnpA; polyribonucleotide nucleotidyltransferase PnpA K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024