+F Repair protein KO #

  DNA Repair and Recombination Proteins - Shewanella oneidensis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SO_3126 ogt; constitutive O6-methylguanine-DNA methyltransferase II Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SO_3384 phrB; deoxyribodipyrimidine photolyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SO_3654 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SO_3368 mutY; adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SO_2514 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SO_0410 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SO_4250 dut; deoxyuridine 5-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SO_3126 ogt; constitutive O6-methylguanine-DNA methyltransferase II Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SO_3384 phrB; deoxyribodipyrimidine photolyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D SO_4169 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E SO_3654 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SO_3127 multifunctional transcriptional regulator of DNA repair AraC family/DNA glycosylase / 8-oxoguanine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SO_3368 mutY; adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SO_0016 tag; DNA-3-methyladenine glycosylase I Tag K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SO_4726 mutM; formamidopyrimidine-DNA glycosylase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SO_2514 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SO_3037 xth; exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SO_0952 recJ; 5'-3' ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SO_4669 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SO_4030 uvrA; excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A E SO_2506 uvrB; excinuclease ABC B subunit UvrB K03702 uvrB; excinuclease ABC subunit B E SO_1861 uvrC; excinuclease ABC C subunit UvrC K03703 uvrC; excinuclease ABC subunit C E SO_0467 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SO_4669 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] E SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SO_0224 rpoB; DNA-directed RNA polymerase beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SO_0225 rpoC; DNA-directed RNA polymerase beta' subunit RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SO_0256 rpoA; DNA-directed RNA polymerase alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SO_0360 rpoZ; DNA-directed RNA polymerase omega subunit RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SO_2255 mfd; transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SO_3431 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E SO_0601 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E SO_1330 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E SO_2790 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E SO_3294 xseA; exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SO_1527 xseB; exodeoxyribonuclease VII small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SO_1644 dnaE; DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SO_0009 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SO_3423 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E SO_1172 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SO_2612 holB; DNA polymerase III delta' subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SO_2245 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SO_2559 dnaQ; DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SO_2855 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SO_2013 dnaX; DNA polymerase III gamma and tau subunits DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SO_0467 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SO_4028 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein E SO_0289 dam; N6-adenine DNA methyltransferase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] E SO_0690 Mu phage DNA adenine methylase Dam family K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SO_2148 recB; exodeoxyribonuclease V beta subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E SO_2149 recC; exodeoxyribonuclease V gamma subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E SO_2147 recD; exodeoxyribonuclease V alpha subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SO_3430 recA; recombinase A RecA K03553 recA; recombination protein RecA E SO_2430 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SO_2429 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SO_2431 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SO_4122 priA; primosomal replication protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SO_3929 priB; primosomal replication protein N PriB K02686 priB; primosomal replication protein N E SO_1817 primosomal replication protein N'-like protein K04067 priC; primosomal replication protein N'' E SO_2790 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E SO_2843 sbcC; dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E SO_2844 sbcD; dsDNA exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SO_3430 recA; recombinase A RecA K03553 recA; recombination protein RecA E SO_1226 radA; ATP-dependent protease RadA K04485 radA; DNA repair protein RadA/Sms E SO_0010 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E SO_4364 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SO_0952 recJ; 5'-3' ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SO_1350 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SO_2015 recR; recombination protein RecR K06187 recR; recombination protein RecR E SO_3462 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SO_1556 rdgC; putative exonuclease RdgC K03554 rdgC; recombination associated protein RdgC E SO_2430 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SO_2429 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SO_2431 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E SO_2744 helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E SO_2843 sbcC; dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E SO_2844 sbcD; dsDNA exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E SO_0459 putative ATPase DUF853 family K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SO_2411 gyrA; DNA gyrase subunit GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SO_0011 gyrB; DNA gyrase B subunit GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SO_2705 topA; DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SO_1863 histone-like DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha F SO_1797 hupB; histone-like DNA-binding protein HupB K03530 hupB; DNA-binding protein HU-beta F SO_0548 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SO_0952 recJ; 5'-3' ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SO_1350 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SO_2015 recR; recombination protein RecR K06187 recR; recombination protein RecR F SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F SO_0393 fis; global transcriptional activator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F SO_2087 ihfA; integration host factor alpha subunit IhfA K04764 ihfA; integration host factor subunit alpha F SO_2401 ihfB; integration host factor beta subunit IhfB K05788 ihfB; integration host factor subunit beta E Supressor F SO_2790 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F SO_4241 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SO_2380 ATP-dependent DNA helicase RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SO_4030 uvrA; excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A F SO_2506 uvrB; excinuclease ABC B subunit UvrB K03702 uvrB; excinuclease ABC subunit B F SO_3146 DNA-binding protein H-NS family K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SO_1114 dinB; DNA polymerase IV DinB K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SO_A0012 umuC; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V D SO_A0013 umuD; DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D SO_3430 recA; recombinase A RecA K03553 recA; recombination protein RecA D SO_4603 lexA; bifunctional transcriptional repressor of SOS-response/self-cleaving protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D SO_3462 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SO_1820 polB; DNA polymerase II PolB K02336 polB; DNA polymerase II [EC:2.7.7.7] D SO_4028 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein D SO_3429 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SO_4325 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D SO_1819 dinG; ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D SO_2081 ATP-dependent helicase DinG family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SO_0410 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SO_4250 dut; deoxyuridine 5-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SO_2415 nrdA; aerobic ribonucleoside-diphosphate reductase alpha subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SO_2416 nrdB; aerobic ribonucleoside-diphosphate reductase beta subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024