+F Repair protein KO
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DNA Repair and Recombination Proteins - Shewanella oneidensis
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SO_3126 ogt; constitutive O6-methylguanine-DNA methyltransferase II Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SO_3384 phrB; deoxyribodipyrimidine photolyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E SO_3654 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SO_3368 mutY; adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SO_2514 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D SO_0410 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SO_4250 dut; deoxyuridine 5-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SO_3126 ogt; constitutive O6-methylguanine-DNA methyltransferase II Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SO_3384 phrB; deoxyribodipyrimidine photolyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D SO_4169 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E SO_3654 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SO_3127 multifunctional transcriptional regulator of DNA repair AraC family/DNA glycosylase / 8-oxoguanine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E SO_3368 mutY; adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SO_0016 tag; DNA-3-methyladenine glycosylase I Tag K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E SO_4726 mutM; formamidopyrimidine-DNA glycosylase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E SO_2514 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E SO_3037 xth; exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E SO_0952 recJ; 5'-3' ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E SO_4669 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E SO_4030 uvrA; excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A
E SO_2506 uvrB; excinuclease ABC B subunit UvrB K03702 uvrB; excinuclease ABC subunit B
E SO_1861 uvrC; excinuclease ABC C subunit UvrC K03703 uvrC; excinuclease ABC subunit C
E SO_0467 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SO_4669 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
E SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F SO_0224 rpoB; DNA-directed RNA polymerase beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F SO_0225 rpoC; DNA-directed RNA polymerase beta' subunit RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F SO_0256 rpoA; DNA-directed RNA polymerase alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F SO_0360 rpoZ; DNA-directed RNA polymerase omega subunit RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F SO_2255 mfd; transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E SO_3431 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E SO_0601 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E SO_1330 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E SO_2790 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E SO_3294 xseA; exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E SO_1527 xseB; exodeoxyribonuclease VII small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E SO_1644 dnaE; DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E SO_0009 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E SO_3423 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E SO_1172 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E SO_2612 holB; DNA polymerase III delta' subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E SO_2245 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SO_2559 dnaQ; DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SO_2855 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SO_2013 dnaX; DNA polymerase III gamma and tau subunits DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E SO_0467 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SO_4028 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein
E SO_0289 dam; N6-adenine DNA methyltransferase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E SO_0690 Mu phage DNA adenine methylase Dam family K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E SO_2148 recB; exodeoxyribonuclease V beta subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E SO_2149 recC; exodeoxyribonuclease V gamma subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E SO_2147 recD; exodeoxyribonuclease V alpha subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E SO_3430 recA; recombinase A RecA K03553 recA; recombination protein RecA
E SO_2430 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E SO_2429 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SO_2431 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E SO_4122 priA; primosomal replication protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E SO_3929 priB; primosomal replication protein N PriB K02686 priB; primosomal replication protein N
E SO_1817 primosomal replication protein N'-like protein K04067 priC; primosomal replication protein N''
E SO_2790 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E SO_2843 sbcC; dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E SO_2844 sbcD; dsDNA exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E SO_3430 recA; recombinase A RecA K03553 recA; recombination protein RecA
E SO_1226 radA; ATP-dependent protease RadA K04485 radA; DNA repair protein RadA/Sms
E SO_0010 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E SO_4364 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E SO_0952 recJ; 5'-3' ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E SO_1350 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E SO_2015 recR; recombination protein RecR K06187 recR; recombination protein RecR
E SO_3462 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E SO_1556 rdgC; putative exonuclease RdgC K03554 rdgC; recombination associated protein RdgC
E SO_2430 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E SO_2429 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SO_2431 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E SO_2744 helicase K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E SO_2843 sbcC; dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E SO_2844 sbcD; dsDNA exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E SO_0459 putative ATPase DUF853 family K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F SO_2411 gyrA; DNA gyrase subunit GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F SO_0011 gyrB; DNA gyrase B subunit GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F SO_2705 topA; DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F SO_1863 histone-like DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
F SO_1797 hupB; histone-like DNA-binding protein HupB K03530 hupB; DNA-binding protein HU-beta
F SO_0548 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F SO_0952 recJ; 5'-3' ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F SO_1350 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F SO_2015 recR; recombination protein RecR K06187 recR; recombination protein RecR
F SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F SO_0393 fis; global transcriptional activator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F SO_2087 ihfA; integration host factor alpha subunit IhfA K04764 ihfA; integration host factor subunit alpha
F SO_2401 ihfB; integration host factor beta subunit IhfB K05788 ihfB; integration host factor subunit beta
E Supressor
F SO_2790 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F SO_4241 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F SO_2380 ATP-dependent DNA helicase RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F SO_4030 uvrA; excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A
F SO_2506 uvrB; excinuclease ABC B subunit UvrB K03702 uvrB; excinuclease ABC subunit B
F SO_3146 DNA-binding protein H-NS family K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D SO_1114 dinB; DNA polymerase IV DinB K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D SO_A0012 umuC; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V
D SO_A0013 umuD; DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D SO_3430 recA; recombinase A RecA K03553 recA; recombination protein RecA
D SO_4603 lexA; bifunctional transcriptional repressor of SOS-response/self-cleaving protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D SO_3462 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D SO_1820 polB; DNA polymerase II PolB K02336 polB; DNA polymerase II [EC:2.7.7.7]
D SO_4028 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein
D SO_3429 recX; regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D SO_4325 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D SO_1819 dinG; ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D SO_2081 ATP-dependent helicase DinG family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D SO_0410 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SO_4250 dut; deoxyuridine 5-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SO_2415 nrdA; aerobic ribonucleoside-diphosphate reductase alpha subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SO_2416 nrdB; aerobic ribonucleoside-diphosphate reductase beta subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024