+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Streptococcus pneumoniae CGSP14 (serotype 14)
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D SPCG_1055 rncS; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SPCG_0945 era; GTP-binding protein Era K03595 era; GTPase
C SPCG_1201 obg; GTP-binding protein, GTP1/Obg family K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SPCG_0516 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C SPCG_0427 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C SPCG_1973 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SPCG_0637 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SPCG_0291 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SPCG_1948 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SPCG_1707 sunL; rRNA methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SPCG_0783 hypothetical protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D SPCG_1933 type II DNA modification methyltransferase, putative K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SPCG_1759 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SPCG_1248 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SPCG_0337 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SPCG_0912 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SPCG_1096 hemolysin A, putative K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D SPCG_2068 rrmA; rRNA (guanine-N1-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D SPCG_1444 trmH; spoU rRNA methylase family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SPCG_2204 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SPCG_1368 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SPCG_0717 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SPCG_1096 hemolysin A, putative K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D SPCG_1007 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SPCG_1847 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SPCG_1180 rluD; ribosomal large subunit pseudouridine synthase, RluD subfamily K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SPCG_0904 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SPCG_1977 rluD; ribosomal large subunit pseudouridine synthase, RluD subfamily K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SPCG_0172 rRNA methylase K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184]
D SPCG_1323 erythromycin ribosome methylase K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184]
D SPCG_1327 rRNA methylase K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184]
B ribosomal protein modification factors
C SPCG_0131 rimI; ribosomal-protein-alanine acetyltransferase, putative K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C SPCG_0726 rimM; 16S rRNA-processing protein K02860 rimM; 16S rRNA processing protein RimM
C SPCG_1760 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C SPCG_1055 rncS; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SPCG_0206 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C SPCG_0557 hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C SPCG_1568 ATP-dependent RNA helicase, putative K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C SPCG_0711 rheB; ATP-dependent RNA helicase, DEAD/DEAH box family K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C SPCG_0945 era; GTP-binding protein Era K03595 era; GTPase
C SPCG_1947 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SPCG_1681 serA; GTP-binding protein EngA K03977 engA; GTPase
C SPCG_1201 obg; GTP-binding protein, GTP1/Obg family K03979 obgE; GTPase [EC:3.6.5.-]
C SPCG_1141 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
C SPCG_0629 GTP-binding protein HflX K03665 hflX; GTPase
C SPCG_1723 GTP-binding protein K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C SPCG_1000 Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SPCG_1618 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SPCG_0520 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C SPCG_0515 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C SPCG_2192 hypothetical protein K14761 rlbA; ribosome-associated protein
C SPCG_1718 iojap-related protein K09710 ybeB; ribosome-associated protein
C SPCG_0943 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C SPCG_1722 hypothetical protein K07574 yhbY; RNA-binding protein
C SPCG_2173 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C SPCG_0004 GTP-binding protein K06942 ychF; ribosome-binding ATPase
C SPCG_1244 hypothetical protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024