+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Salinibacter ruber DSM 13855

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D SRU_1343 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C SRU_2081 era; GTP-binding protein Era K03595 era; GTPase C SRU_1186 GTPase of unknown function subfamily, putative K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C SRU_0457 putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor C SRU_1778 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA C SRU_0015 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C SRU_1763 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D SRU_2194 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D SRU_0884 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SRU_2078 conserved hypothetical protein TIGR00095 K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D SRU_2116 conserved hypothetical protein TIGR00046 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D SRU_0061 glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D SRU_0553 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D SRU_2088 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D SRU_1461 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D SRU_2126 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D SRU_1743 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D SRU_1495 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D SRU_1189 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C SRU_1628 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C SRU_0823 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C SRU_0770 Cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C SRU_1343 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C SRU_0489 ribonuclease, Rne/Rng family subfamily K08301 rng; ribonuclease G [EC:3.1.26.-] C SRU_1064 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C SRU_0046 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C SRU_2081 era; GTP-binding protein Era K03595 era; GTPase C SRU_1119 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C SRU_0339 GTP-binding protein, Era/ThdF family K03977 engA; GTPase C SRU_1186 GTPase of unknown function subfamily, putative K03979 obgE; GTPase [EC:3.6.5.-] C SRU_2412 GTPase of unknown function subfamily, putative K03665 hflX; GTPase B Other maturation factors C SRU_1597 SUA5 protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C SRU_1062 spoT; RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C SRU_1776 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C SRU_1779 Uncharacterized BCR, YhbC family COG0779 K09748 rimP; ribosome maturation factor RimP C SRU_2548 Domain of unknown function DUF143 family K09710 ybeB; ribosome-associated protein C SRU_2092 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor C SRU_1340 CRS1 / YhbY domain superfamily K07574 yhbY; RNA-binding protein C SRU_2093 yfiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor C SRU_0017 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C SRU_0039 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024