+E Ribosome biogenesis KO
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Ribosome Biogenesis - Salinibacter ruber DSM 13855
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D SRU_1343 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SRU_2081 era; GTP-binding protein Era K03595 era; GTPase
C SRU_1186 GTPase of unknown function subfamily, putative K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SRU_0457 putative RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C SRU_1778 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C SRU_0015 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C SRU_1763 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SRU_2194 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SRU_0884 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SRU_2078 conserved hypothetical protein TIGR00095 K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SRU_2116 conserved hypothetical protein TIGR00046 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SRU_0061 glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SRU_0553 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SRU_2088 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D SRU_1461 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SRU_2126 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SRU_1743 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SRU_1495 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SRU_1189 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C SRU_1628 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C SRU_0823 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C SRU_0770 Cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C SRU_1343 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SRU_0489 ribonuclease, Rne/Rng family subfamily K08301 rng; ribonuclease G [EC:3.1.26.-]
C SRU_1064 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C SRU_0046 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C SRU_2081 era; GTP-binding protein Era K03595 era; GTPase
C SRU_1119 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SRU_0339 GTP-binding protein, Era/ThdF family K03977 engA; GTPase
C SRU_1186 GTPase of unknown function subfamily, putative K03979 obgE; GTPase [EC:3.6.5.-]
C SRU_2412 GTPase of unknown function subfamily, putative K03665 hflX; GTPase
B Other maturation factors
C SRU_1597 SUA5 protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SRU_1062 spoT; RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SRU_1776 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C SRU_1779 Uncharacterized BCR, YhbC family COG0779 K09748 rimP; ribosome maturation factor RimP
C SRU_2548 Domain of unknown function DUF143 family K09710 ybeB; ribosome-associated protein
C SRU_2092 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor
C SRU_1340 CRS1 / YhbY domain superfamily K07574 yhbY; RNA-binding protein
C SRU_2093 yfiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C SRU_0017 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C SRU_0039 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024