+F Repair protein KO #

  DNA Repair and Recombination Proteins - Staphylococcus argenteus

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SAMSHR1132_23670 putative 6-O-methylguanine DNAmethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SAMSHR1132_06370 putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SAMSHR1132_05250 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SAMSHR1132_21680 putative 3-methylpurine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SAMSHR1132_17130 HhH-GPD superfamily base excision DNA repair protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SAMSHR1132_12920 putative endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SAMSHR1132_23110 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAMSHR1132_16380 MutT/NUDIX hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAMSHR1132_18150 putative dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SAMSHR1132_23670 putative 6-O-methylguanine DNAmethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SAMSHR1132_06370 putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SAMSHR1132_05250 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SAMSHR1132_21680 putative 3-methylpurine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SAMSHR1132_17130 HhH-GPD superfamily base excision DNA repair protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SAMSHR1132_14930 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SAMSHR1132_15200 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SAMSHR1132_12920 putative endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SAMSHR1132_13970 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E SAMSHR1132_14720 putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SAMSHR1132_17490 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SAMSHR1132_15210 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SAMSHR1132_07040 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SAMSHR1132_07030 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SAMSHR1132_09920 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E SAMSHR1132_17500 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAMSHR1132_20390 UvrD/REP family helicase protein (fragment) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAMSHR1132_15210 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SAMSHR1132_17490 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SAMSHR1132_04860 DNA-directed RNA polymerase beta chain protein K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SAMSHR1132_04870 DNA-directed RNA polymerase beta' chain protein K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SAMSHR1132_20500 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SAMSHR1132_19510 DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F SAMSHR1132_10510 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SAMSHR1132_04470 Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SAMSHR1132_11380 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E SAMSHR1132_09900 MutS2 protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E SAMSHR1132_11390 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SAMSHR1132_13640 Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SAMSHR1132_13630 Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SAMSHR1132_15530 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SAMSHR1132_11070 DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E SAMSHR1132_00020 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SAMSHR1132_14260 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SAMSHR1132_04280 putative DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SAMSHR1132_17390 putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SAMSHR1132_04220 DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SAMSHR1132_17490 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SAMSHR1132_17500 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAMSHR1132_20390 UvrD/REP family helicase protein (fragment) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAMSHR1132_03390 putative single strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SAMSHR1132_18250 putative single strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SAMSHR1132_19200 putative single strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SAMSHR1132_14560 conserved hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SAMSHR1132_11280 recombinase A K03553 recA; recombination protein RecA E SAMSHR1132_14780 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SAMSHR1132_14770 Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SAMSHR1132_10530 primosomal protein n' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SAMSHR1132_11910 Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E SAMSHR1132_11900 Nuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SAMSHR1132_11280 recombinase A K03553 recA; recombination protein RecA E SAMSHR1132_04700 DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E SAMSHR1132_00040 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E SAMSHR1132_00450 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SAMSHR1132_10680 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SAMSHR1132_14720 putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SAMSHR1132_14060 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SAMSHR1132_04240 recombination protein RecR K06187 recR; recombination protein RecR E SAMSHR1132_13600 putative DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E SAMSHR1132_12890 Holliday junction resolvase recU K03700 recU; recombination protein U E SAMSHR1132_14780 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SAMSHR1132_14770 Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E SAMSHR1132_08190 ATP-dependent helicase/nuclease subunit A, putative K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SAMSHR1132_08180 ATP-dependent helicase/deoxyribonuclease subunit B, putative K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E SAMSHR1132_00520 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E SAMSHR1132_11910 Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E SAMSHR1132_11900 Nuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SAMSHR1132_00060 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SAMSHR1132_00050 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SAMSHR1132_10930 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SAMSHR1132_13120 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SAMSHR1132_18270 DNA single-strand annealing proteins K07455 recT; recombination protein RecT F SAMSHR1132_14720 putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SAMSHR1132_14060 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SAMSHR1132_04240 recombination protein RecR K06187 recR; recombination protein RecR F SAMSHR1132_17490 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SAMSHR1132_06660 putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SAMSHR1132_13200 DEAD/DEAH box helicase family protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SAMSHR1132_07040 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SAMSHR1132_07030 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SAMSHR1132_17400 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SAMSHR1132_12070 ImpB/MucB/SamB family protein K03502 umuC; DNA polymerase V C Other SOS response factors D SAMSHR1132_11280 recombinase A K03553 recA; recombination protein RecA D SAMSHR1132_11840 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D SAMSHR1132_13600 putative DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D SAMSHR1132_03390 putative single strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SAMSHR1132_18250 putative single strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SAMSHR1132_19200 putative single strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SAMSHR1132_17180 regulatory protein Recx K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D SAMSHR1132_09890 DNA polymerase X family protein K02347 polX; DNA polymerase (family X) C DNA helicases D SAMSHR1132_12950 probable ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SAMSHR1132_23110 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAMSHR1132_16380 MutT/NUDIX hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAMSHR1132_18150 putative dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SAMSHR1132_06760 Ribonucleoside-diphosphate reductase, large chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SAMSHR1132_06770 ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D SAMSHR1132_15540 phosphoesterase, putative K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024