+E Ribosome biogenesis KO
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Ribosome Biogenesis - Staphylococcus aureus subsp. aureus VC40
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D SAVC_05330 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SAVC_07085 era; GTPase Era K03595 era; GTPase
C SAVC_07465 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SAVC_05495 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C SAVC_06870 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C SAVC_02270 transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SAVC_07975 pseudouridine synthase family 1 protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SAVC_02050 ksgA; 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SAVC_05250 16S rRNA methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SAVC_02295 hypothetical protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D SAVC_04780 hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SAVC_07135 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SAVC_12440 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SAVC_05060 16S rRNA m(4)C1402 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SAVC_02030 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D SAVC_02245 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SAVC_00120 rRNA large subunit methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SAVC_04565 putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SAVC_05255 ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SAVC_08745 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SAVC_06715 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SAVC_04205 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SAVC_05150 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SAVC_08486 truncated ribosomal large subunit pseudouridine synthase D, RluD subfamily K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SAVC_05665 hypothetical protein K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184]
B ribosomal protein modification factors
C SAVC_09130 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C SAVC_01460 acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C SAVC_05360 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C SAVC_07140 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C SAVC_05330 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SAVC_07330 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C SAVC_02240 hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C SAVC_09285 helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C SAVC_07040 DEAD-box ATP dependent DNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C SAVC_07085 era; GTPase Era K03595 era; GTPase
C SAVC_05270 rsgA; RsgA, truncated ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SAVC_06625 GTP-binding protein Der K03977 engA; GTPase
C SAVC_07465 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C SAVC_05380 rbgA; GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A
C SAVC_05725 GTP-binding protein, putative K03665 hflX; GTPase
C SAVC_07240 GTPase YqeH K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C SAVC_09455 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SAVC_07415 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SAVC_05515 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C SAVC_05490 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
C SAVC_00015 hypothetical protein K14761 rlbA; ribosome-associated protein
C SAVC_07215 hypothetical protein K09710 ybeB; ribosome-associated protein
C SAVC_07100 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C SAVC_07230 hypothetical protein K07574 yhbY; RNA-binding protein
C SAVC_03395 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C SAVC_01565 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C SAVC_04795 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024