+E Ribosome biogenesis KO
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Ribosome Biogenesis - Synechococcus sp. WH 7803
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D SynWH7803_0204 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SynWH7803_1726 era; GTP-binding protein era homolog K03595 era; GTPase
C SynWH7803_2007 GTPase K03595 era; GTPase
C SynWH7803_2095 obg; Predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SynWH7803_2077 nusA; Transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C SynWH7803_0010 nusB; Transcription termination factor, NusB K03625 nusB; transcription antitermination protein NusB
C SynWH7803_2375 nusG; Transcription antiterminator protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SynWH7803_1547 rsuA; 16S rRNA pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SynWH7803_1366 ksgA; Dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SynWH7803_1778 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SynWH7803_1594 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SynWH7803_1487 Conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SynWH7803_0997 Conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SynWH7803_2051 gidB; Methyltransferase gidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SynWH7803_2313 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SynWH7803_1910 Tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SynWH7803_2036 Predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D SynWH7803_1064 Possible tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SynWH7803_1085 Conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SynWH7803_2120 Predicted N6-adenine-specific DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D SynWH7803_2058 Predicted Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SynWH7803_2036 Predicted rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D SynWH7803_1289 Hypothetical RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SynWH7803_1572 RluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SynWH7803_2348 Pseudouridylate synthase, 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SynWH7803_2308 Pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SynWH7803_1637 Pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C SynWH7803_1534 Predicted acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C SynWH7803_0201 rimM; RimM protein, required for 16S rRNA processing K02860 rimM; 16S rRNA processing protein RimM
C SynWH7803_2206 2-methylthioadenine synthetase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C SynWH7803_1980 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C SynWH7803_0204 rnc; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SynWH7803_0372 cafA; Ribonucleases G and E K08300 rne; ribonuclease E [EC:3.1.26.12]
C SynWH7803_1157 Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C SynWH7803_1063 Ribonuclease III family protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C SynWH7803_1511 Superfamily II DNA/RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C SynWH7803_1726 era; GTP-binding protein era homolog K03595 era; GTPase
C SynWH7803_2007 GTPase K03595 era; GTPase
C SynWH7803_0025 engC; Probable GTPase engC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SynWH7803_0568 engA; GTP-binding protein engA K03977 engA; GTPase
C SynWH7803_2095 obg; Predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-]
C SynWH7803_2349 Predicted GTPase K14540 rbgA; ribosome biogenesis GTPase A
C SynWH7803_2176 hflX; GTP-binding protein; HflX K03665 hflX; GTPase
B Other maturation factors
C SynWH7803_0525 Possible translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SynWH7803_2342 spoT; Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SynWH7803_2218 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C SynWH7803_2076 Conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C SynWH7803_1434 S4-like RNA-binding protein K14761 rlbA; ribosome-associated protein
C SynWH7803_1427 Conserved hypothetical protein K09710 ybeB; ribosome-associated protein
C SynWH7803_2327 Predicted metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
C SynWH7803_1615 Predicted GTPase K06942 ychF; ribosome-binding ATPase
C SynWH7803_1902 Predicted metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024