+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Tribolium castaneum (red flour beetle)
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D 656751 rRNA 2'-O-methyltransferase fibrillarin K14563 NOP1; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]
D 662315 nucleolar protein 56 K14564 NOP56; nucleolar protein 56
D 662214 nucleolar protein 58 K14565 NOP58; nucleolar protein 58
D 664143 NHP2-like protein 1 K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13
C Box H/ACA snoRNPs
D 655639 H/ACA ribonucleoprotein complex subunit 4 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D 100142234 H/ACA ribonucleoprotein complex subunit 1 K11128 GAR1; H/ACA ribonucleoprotein complex subunit 1
D 661229 H/ACA ribonucleoprotein complex subunit 2-like protein K11129 NHP2; H/ACA ribonucleoprotein complex subunit 2
D 662792 H/ACA ribonucleoprotein complex subunit 3 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D 662781 H/ACA ribonucleoprotein complex non-core subunit NAF1 K14763 NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1
D 103313588 protein SHQ1 homolog K14764 SHQ1; protein SHQ1
B 90S particles
C U3 small nucleolar RNA-associated proteins
D 655968 U3 small nucleolar ribonucleoprotein protein IMP3 K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3
D 661277 U3 small nucleolar ribonucleoprotein protein MPP10 K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10
D 663701 neuroguidin K14765 NGDN; U3 small nucleolar ribonucleoprotein protein LCP5
D 660446 ribosomal RNA-processing protein 7 homolog A K14545 RRP7; ribosomal RNA-processing protein 7
D 658982 periodic tryptophan protein 2 homolog K14558 PWP2; periodic tryptophan protein 2
D 663085 periodic tryptophan protein 2 homolog K14558 PWP2; periodic tryptophan protein 2
D 663747 nucleolar protein 14 homolog K14766 NOP14; nucleolar protein 14
D 664084 something about silencing protein 10 K14767 UTP3; U3 small nucleolar RNA-associated protein 3
D 663378 cirhin K14548 UTP4; U3 small nucleolar RNA-associated protein 4
D 103312459 WD repeat-containing protein 43 K14546 UTP5; U3 small nucleolar RNA-associated protein 5
D 103312440 U3 small nucleolar RNA-associated protein 6 homolog K14557 UTP6; U3 small nucleolar RNA-associated protein 6
D 659839 WD repeat-containing protein 46 K14768 UTP7; U3 small nucleolar RNA-associated protein 7
D 103312200 probable U3 small nucleolar RNA-associated protein 11 K14769 UTP11; U3 small nucleolar RNA-associated protein 11
D 658568 WD repeat-containing protein 3 K14556 DIP2; U3 small nucleolar RNA-associated protein 12
D 663409 zinc finger protein 267 K14555 UTP13; U3 small nucleolar RNA-associated protein 13
D 103313955 transducin beta-like protein 3 K14555 UTP13; U3 small nucleolar RNA-associated protein 13
D 661854 U3 small nucleolar RNA-associated protein 14 homolog A K14567 UTP14; U3 small nucleolar RNA-associated protein 14
D 662465 U3 small nucleolar RNA-associated protein 15 homolog K14549 UTP15; U3 small nucleolar RNA-associated protein 15
D 663649 WD repeat-containing protein 75 K14552 NAN1; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
D 655035 U3 small nucleolar RNA-associated protein 18 homolog K14553 UTP18; U3 small nucleolar RNA-associated protein 18
D 655807 nucleolar complex protein 4 homolog B K14771 NOC4; U3 small nucleolar RNA-associated protein 19
D 657455 small subunit processome component 20 homolog K14772 UTP20; U3 small nucleolar RNA-associated protein 20
D 655179 WD repeat-containing protein 36 K14554 UTP21; U3 small nucleolar RNA-associated protein 21
D 656445 nucleolar protein 6 K14544 UTP22; U3 small nucleolar RNA-associated protein 22
D 657722 rRNA-processing protein FCF1 homolog K14566 UTP24; U3 small nucleolar RNA-associated protein 24
D 660244 digestive organ expansion factor homolog K14774 UTP25; U3 small nucleolar RNA-associated protein 25
D 100142121 ribosomal L1 domain-containing protein 1 K14775 UTP30; ribosome biogenesis protein UTP30
C Helicases
D 656831 Ddx10; DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 K14776 DDX10; ATP-dependent RNA helicase DDX10/DBP4 [EC:5.6.2.7]
D 662696 probable ATP-dependent RNA helicase pitchoune K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D 658296 probable ATP-dependent RNA helicase DDX47 K14777 DDX47; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7]
D 660102 probable ATP-dependent RNA helicase DDX49 K14778 DDX49; ATP-dependent RNA helicase DDX49/DBP8 [EC:5.6.2.7]
D 664194 probable ATP-dependent RNA helicase DDX52 K14779 DDX52; ATP-dependent RNA helicase DDX52/ROK1 [EC:5.6.2.7]
D 654855 putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
D 103312130 probable ATP-dependent RNA helicase kurz K14780 DHX37; ATP-dependent RNA helicase DHX37/DHR1 [EC:5.6.2.6]
D 664411 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
C GTPase
D 655542 ribosome biogenesis protein BMS1 homolog K14569 BMS1; ribosome biogenesis protein BMS1
C RNase
D 655800 ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D 660963 lariat debranching enzyme K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-]
C Kinase
D 660746 casein kinase II subunit alpha K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 662984 casein kinase II subunit alpha K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 658630 casein kinase II subunit beta K03115 CSNK2B; casein kinase II subunit beta
C Other 90S particles
D 655070 protein AATF K14782 AATF; protein AATF/BFR2
D 664400 ribosomal RNA small subunit methyltransferase NEP1 K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D 663269 pre-rRNA-processing protein esf2 K14785 ESF2; ESF2/ABP1 family protein
D 662268 protein KRI1 homolog K14786 KRI1; protein KRI1
D 658352 KRR1 small subunit processome component homolog K06961 KRR1; ribosomal RNA assembly protein
D 655589 probable RNA-binding protein 19 K14787 MRD1; multiple RNA-binding domain-containing protein 1
D 662819 RNA cytidine acetyltransferase K14521 NAT10; N-acetyltransferase 10 [EC:2.3.1.-]
D 657571 nucleolar protein 10 K14788 NOL10; ribosome biogenesis protein ENP2
D 664587 nucleolar protein 9 K14790 NOP9; nucleolar protein 9
D 660926 periodic tryptophan protein 1 homolog K14791 PWP1; periodic tryptophan protein 1
D 656339 probable RNA 3'-terminal phosphate cyclase-like protein K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein
D 661461 protein RRP5 homolog K14792 RRP5; rRNA biogenesis protein RRP5
D 655274 U3 small nucleolar RNA-interacting protein 2 K14793 RRP9; ribosomal RNA-processing protein 9
D 660503 RRP12-like protein K14794 RRP12; ribosomal RNA-processing protein 12
D 664407 ribosomal RNA processing protein 36 homolog K14795 RRP36; ribosomal RNA-processing protein 36
D 663659 DDB1- and CUL4-associated factor 13 K11806 DCAF13; DDB1- and CUL4-associated factor 13
B Pre-40S particles
C Kinases
D 660167 serine/threonine-protein kinase RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D 655344 serine/threonine-protein kinase RIO2 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D 661358 probable dimethyladenosine transferase K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183]
D 661160 probable 18S rRNA (guanine-N(7))-methyltransferase K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase [EC:2.1.1.309]
D 656857 methyltransferase-like protein 5 K24418 METTL5; rRNA N6-adenosine-methyltransferase METTL5
D 656269 bystin K14797 ENP1; essential nuclear protein 1
D 664301 protein LTV1 homolog K14798 LTV1; protein LTV1
D 662963 RNA-binding protein NOB1 K11883 NOB1; RNA-binding protein NOB1
D 659994 RNA-binding protein pno1 K11884 PNO1; RNA-binding protein PNO1
D 657695 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
D 103312254 adenylate kinase isoenzyme 6 K18532 AK6; adenylate kinase [EC:2.7.4.3]
D 661235 pre-rRNA-processing protein TSR1 homolog K14799 TSR1; pre-rRNA-processing protein TSR1
D 100141819 pre-rRNA-processing protein TSR2 homolog K14800 TSR2; pre-rRNA-processing protein TSR2
D 658853 ribosome biogenesis protein tsr3 K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
D 663558 programmed cell death protein 2-like K14801 TSR4; pre-rRNA-processing protein TSR4
D 664233 programmed cell death protein 2 K14801 TSR4; pre-rRNA-processing protein TSR4
D 655186 active regulator of SIRT1 K26536 RPS19BP1; active regulator of SIRT1
D 662656 exportin-1 K14290 XPO1; exportin-1
D 662047 importin subunit beta-1 K14293 KPNB1; importin subunit beta-1
D 654903 TNPO1; transportin-1 K18752 TNPO1; transportin-1
D 100141715 importin-4 K20221 IPO4; importin-4
D 655773 importin-5 K20222 IPO5; importin-5
D 659445 importin-7 K20223 IPO7; importin-7
D 103314871 uncharacterized LOC103314871 K20224 IPO9; importin-9
C Other pre-40S particles
D 663307 probable phospholipid-transporting ATPase IA K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1]
D 661747 eukaryotic translation initiation factor 3 subunit J K03245 EIF3J; translation initiation factor 3 subunit J
D 664421 probable protein phosphatase 2C T23F11.1 K14803 PTC2_3; protein phosphatase PTC2/3 [EC:3.1.3.16]
D 656379 ATP-binding cassette sub-family E member 1 K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
D 100141769 Rm62; ATP-dependent RNA helicase p62 K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
D 103312134 DEAD-box ATP-dependent RNA helicase 20 K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
D 662696 probable ATP-dependent RNA helicase pitchoune K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D 657845 ATP-dependent RNA helicase DDX24 K14805 DDX24; ATP-dependent RNA helicase DDX24/MAK5 [EC:5.6.2.7]
D 103313489 probable ATP-dependent RNA helicase DDX27 K13181 DDX27; ATP-dependent RNA helicase DDX27 [EC:5.6.2.7]
D 657677 probable ATP-dependent RNA helicase CG8611 K14806 DDX31; ATP-dependent RNA helicase DDX31/DBP7 [EC:5.6.2.7]
D 657837 probable ATP-dependent RNA helicase Dbp73D K14807 DDX51; ATP-dependent RNA helicase DDX51/DBP6 [EC:5.6.2.7]
D 660698 ATP-dependent RNA helicase DDX54 K14808 DDX54; ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7]
D 655034 probable ATP-dependent RNA helicase DDX56 K14810 DDX56; ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7]
D 658969 superkiller viralicidic activity 2-like 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C GTPases
D 663428 guanine nucleotide-binding protein-like 3 homolog K14538 NUG1; nuclear GTP-binding protein
D 655860 nucleolar GTP-binding protein 2 K14537 NUG2; nuclear GTP-binding protein
D 664391 nucleolar GTP-binding protein 1 K06943 NOG1; nucleolar GTP-binding protein
D 657331 large subunit GTPase 1 homolog K14539 LSG1; large subunit GTPase 1 [EC:3.6.1.-]
D 656169 elongation factor Tu GTP-binding domain-containing protein 1 K14536 RIA1; ribosome assembly protein 1 [EC:3.6.5.-]
C RNases
D 660205 oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D 103312322 RNA exonuclease 1 homolog K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D 660590 putative RNA exonuclease NEF-sp K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D 663618 XRN1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D 662556 5'-3' exoribonuclease 2 homolog K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D RNase MRP
E 657766 ribonucleases P/MRP protein subunit POP1 K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]
E 657809 ribonuclease P protein subunit p29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E 663501 ribonuclease P/MRP protein subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E 103313093 ribonuclease P protein subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
E 658519 ribonuclease P protein subunit p20 K14527 RPP20; ribonuclease P/MRP protein subunit RPP20 [EC:3.1.26.5]
E 103312405 ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
E 103313796 hypothetical protein K14523 RPP38; ribonucleases P/MRP protein subunit RPP38 [EC:3.1.26.5]
C Kinases
D 103312187 polynucleotide 5'-hydroxyl-kinase NOL9 K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
C Export and cytoplasmic maturation factors
D 655357 ATP-binding cassette sub-family F member 2 K06185 ABCF2; ATP-binding cassette, subfamily F, member 2
D 658655 eukaryotic translation initiation factor 6 K03264 EIF6; translation initiation factor 6
D 658415 eukaryotic translation initiation factor 6 K03264 EIF6; translation initiation factor 6
D 658492 eukaryotic translation initiation factor 6-like K03264 EIF6; translation initiation factor 6
D 656451 heat shock 70 kDa protein II K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 100142317 hsp68a; heat shock protein 68a K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 655234 heat shock protein TC005094 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 657158 heat shock 70 kDa protein cognate 4 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 663293 heat shock protein 70 A1 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 100142517 hsp68b; heat shock protein 68b K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 659796 heat shock 70 kDa protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 664101 heat shock 70 kDa protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 100142620 heat shock cognate 71 kDa protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 662326 heat shock 70 kDa protein cognate 2 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 655416 mRNA turnover protein 4 homolog K14815 MRT4; mRNA turnover protein 4
D 655503 60S ribosomal export protein NMD3 K07562 NMD3; 60S ribosomal export protein NMD3
D 103312682 nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
D 103312683 nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
D 656618 nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
D 657794 NTF2-related export protein K14285 NXT1_2; NTF2-related export protein 1/2
D 657695 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
D 662331 zinc finger protein 622 K14816 REI1; pre-60S factor REI1
D 663192 ribosome maturation protein SBDS K14574 SDO1; ribosome maturation protein SDO1
D 659384 spermatogenesis-associated protein 5 K14575 AFG2; AAA family ATPase
D 663387 uncharacterized LOC663387 K26052 CINP; cyclin-dependent kinase 2-interacting protein
D 107397469 uncharacterized LOC107397469 K26053 C1ORF109; ribosome biogenesis protein C1orf109
D 662656 exportin-1 K14290 XPO1; exportin-1
D 662047 importin subunit beta-1 K14293 KPNB1; importin subunit beta-1
D 654903 TNPO1; transportin-1 K18752 TNPO1; transportin-1
D 100141715 importin-4 K20221 IPO4; importin-4
D 655773 importin-5 K20222 IPO5; importin-5
D 659445 importin-7 K20223 IPO7; importin-7
D 103314871 uncharacterized LOC103314871 K20224 IPO9; importin-9
D 655817 dual specificity protein phosphatase 12 K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48]
C 5-FMC complex
D 660116 testis-expressed sequence 10 protein K14827 IPI1; pre-rRNA-processing protein IPI1
D 661378 WD repeat-containing protein 18 K14829 IPI3; pre-rRNA-processing protein IPI3
D 100142009 uncharacterized LOC100142009 K16912 LAS1; ribosomal biogenesis protein LAS1
D 103312495 uncharacterized LOC103312495 K16913 PELP1; proline-, glutamic acid- and leucine-rich protein 1
C Ribosome quality control proteins
D 657391 E3 ubiquitin-protein ligase listerin K22377 LTN1; E3 ubiquitin-protein ligase listerin [EC:2.3.2.27]
D 662290 transcription factor 25 K24970 TCF25; transcription factor 25
D 662550 nuclear export mediator factor NEMF homolog K24971 NEMF; nuclear export mediator factor NEMF
D 661187 TER94; transitional endoplasmic reticulum ATPase TER94 K13525 VCP; transitional endoplasmic reticulum ATPase
D 659535 nuclear protein localization protein 4 homolog K14015 NPLOC4; nuclear protein localization protein 4
D 661931 ubiquitin fusion degradation protein 1 homolog K14016 UFD1; ubiquitin fusion degradation protein 1
D 661250 putative peptidyl-tRNA hydrolase PTRHD1 K05969 PTRHD1; peptidyl-tRNA hydrolase PTRHD1 [EC:3.1.1.29]
D 655005 ankyrin repeat and zinc finger domain-containing protein 1 K26089 ANKZF1; ankyrin repeat and zinc finger domain-containing protein 1
C Other pre-60S particles
D 659117 ribosome biogenesis protein BRX1 homolog K14820 BRX1; ribosome biogenesis protein BRX1
D 664314 zinc finger protein 593 homolog K14821 BUD20; bud site selection protein 20
D 659103 coiled-coil domain-containing protein 86 K14822 CGR1; rRNA-processing protein CGR1
D 663412 probable rRNA-processing protein EBP2 homolog K14823 EBP2; rRNA-processing protein EBP2
D 662049 ribosome biogenesis protein BOP1 homolog K14824 ERB1; ribosome biogenesis protein ERB1
D 655256 transmembrane emp24 domain-containing protein 5 K14825 TMED5; p24 family protein gamma-2
D 661223 46 kDa FK506-binding nuclear protein K14826 FPR3_4; FK506-binding nuclear protein [EC:5.2.1.8]
D 656500 p21-activated protein kinase-interacting protein 1-like K14830 MAK11; protein MAK11
D 661033 protein MAK16 homolog K14831 MAK16; protein MAK16
D 656633 CCAAT/enhancer-binding protein zeta K14832 MAK21; ribosome biogenesis protein MAK21
D 661291 Mdn1; midasin K14572 MDN1; midasin
D 660211 60S ribosome subunit biogenesis protein NIP7 homolog K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7
D 657042 nucleolar complex protein 2 homolog K14833 NOC2; nucleolar complex protein 2
D 660726 nucleolar complex protein 3 homolog K14834 NOC3; nucleolar complex protein 3
D 663261 probable 28S rRNA (cytosine-C(5))-methyltransferase K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310]
D 663199 RNA-binding protein 28 K14573 NOP4; nucleolar protein 4
D 657197 probable RNA-binding protein CG14230 K14836 NOP8; nucleolar protein 8
D 655337 hypothetical protein K14840 NOP53; nucleolar protein 53
D 661385 WD repeat-containing protein 74 K14841 NSA1; ribosome biogenesis protein NSA1
D 657398 ribosome biogenesis protein NSA2 homolog K14842 NSA2; ribosome biogenesis protein NSA2
D 655572 pescadillo homolog K14843 PES1; pescadillo
D 659823 pescadillo homolog K14843 PES1; pescadillo
D 659669 protein penguin K14844 PUF6; pumilio homology domain family member 6
D 660926 periodic tryptophan protein 1 homolog K14791 PWP1; periodic tryptophan protein 1
D 663248 bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 K16914 RIOX1; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine4/36 demethylase [EC:1.14.11.79 1.14.11.67 1.14.11.69]
D 661314 NVL; nuclear valosin-containing protein-like K14571 RIX7; ribosome biogenesis ATPase
D 658342 probable ribosome production factor 1 K14846 RPF1; ribosome production factor 1
D 655032 ribosome production factor 2 homolog K14847 RPF2; ribosome production factor 2
D 663796 glutamate-rich WD repeat-containing protein 1 K14848 RRB1; ribosome assembly protein RRB1
D 662195 ribosomal RNA processing protein 1 homolog K14849 RRP1; ribosomal RNA-processing protein 1
D 661874 ribosomal RNA-processing protein 8 K14850 RRP8; ribosomal RNA-processing protein 8 [EC:2.1.1.287]
D 660503 RRP12-like protein K14794 RRP12; ribosomal RNA-processing protein 12
D 655145 nucleolar protein 12 K14851 RRP17; ribosomal RNA-processing protein 17
D 103314095 ribosome biogenesis regulatory protein homolog K14852 RRS1; regulator of ribosome biosynthesis
D 661129 Nle; notchless K14855 RSA4; ribosome assembly protein 4
D 659000 protein SDA1 homolog K14856 SDA1; protein SDA1
D 660067 pre-rRNA processing protein FTSJ3 K14857 SPB1; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-]
D 663282 protein Peter pan K14859 SSF1_2; ribosome biogenesis protein SSF1/2
D 103315101 translation machinery-associated protein 16 K14860 TMA16; translation machinery-associated protein 16
D 100141557 uncharacterized LOC100141557 K14861 URB1; nucleolar pre-ribosomal-associated protein 1
D 655202 ribosome biogenesis protein WDR12 homolog K14863 WDR12; ribosome biogenesis protein
D 103313262 nuclear fragile X mental retardation-interacting protein 1 K23308 NUFIP1; nuclear fragile X mental retardation-interacting protein 1
D 657668 zinc finger HIT domain-containing protein 3 K23309 ZNHIT3; zinc finger HIT domain-containing protein 3
B Other ribosome biogenesis factors
C 663110 protein BCCIP homolog K15262 BCP1; protein BCP1
C 662145 uncharacterized protein C16C10.8 K15263 LYER; cell growth-regulating nucleolar protein
C 662830 5-methylcytosine rRNA methyltransferase NSUN4 K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4 [EC:2.1.1.-]
C 657361 probable 28S rRNA (cytosine-C(5))-methyltransferase K15264 NSUN5; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311]
C 658470 dimethyladenosine transferase 1, mitochondrial K15266 TFB1M; dimethyladenosine transferase 1, mitochondrial [EC:2.1.1.-]
C 661538 probable methyltransferase BTM2 homolog K18849 BMT2; 25S rRNA (adenine2142-N1)-methyltransferase [EC:2.1.1.286]
C 657297 rRNA methyltransferase 3, mitochondrial K20095 RNMTL1; 16S rRNA (guanosine(1370)-2'-O)-methyltransferase [EC:2.1.1.-]
C 658890 zinc finger CCHC domain-containing protein 4 K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4 [EC:2.1.1.-]
C 657488 probable ATP-dependent RNA helicase DDX28 K20096 DDX28; ATP-dependent RNA helicase DDX28 [EC:5.6.2.7]
C 103313274 putative ATP-dependent RNA helicase DHX33 K17820 DHX33; ATP-dependent RNA helicase DHX33 [EC:5.6.2.6]
C 655296 GTPase Era, mitochondrial K03595 era; GTPase
C 658078 proliferation-associated protein 2G4 K26736 PA2G4; ERBB-3 binding protein
C 660430 mitochondrial GTPase 1 K19828 MTG1; mitochondrial GTPase 1
C 654876 mitochondrial ribosome-associated GTPase 2 K03979 obgE; GTPase [EC:3.6.5.-]
C 660315 nitric oxide-associated protein 1 K19832 NOA1; nitric oxide-associated protein 1
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D 662315 nucleolar protein 56 K14564 NOP56; nucleolar protein 56
D 655581 60S ribosomal protein L7a K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D 655639 H/ACA ribonucleoprotein complex subunit 4 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D 662792 H/ACA ribonucleoprotein complex subunit 3 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
B rRNA modification factors
C 16S rRNA modification factors
C 23S rRNA modification factors
D 656536 rRNA methyltransferase 2, mitochondrial K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
B ribosomal protein modification factors
B rRNA processing factors
C 655800 ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
B rRNA helicases
B GTPases
C 655296 GTPase Era, mitochondrial K03595 era; GTPase
C 654876 mitochondrial ribosome-associated GTPase 2 K03979 obgE; GTPase [EC:3.6.5.-]
B Other maturation factors
C 661086 yrdC domain-containing protein, mitochondrial K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024