+E	Transcription factors	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Factors - Thioploca ingrica</h2>
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A<b>Eukaryotic type</b>
B  Basic leucine zipper (bZIP)
C    AP-1(-like) components, Jun
C    AP-1(-like) components, Fos
C    AP-1(-like) components, Maf
C    AP-1(-like) components, NF-E2
C    AP-1(-like) components, Fungal regulators
C    AP-1(-like) components, CRE-BP/ATF
C    CREB
C    C/EBP-like factors
C    bZIP/PAR
C    Plant bZIP factors
C    ZIP only
B  Basic helix-loop-helix (bHLH)
C    Ubiquitous (class A) factors
C    Myogenic transcription factors
C    Achaete-Scute
C    Tal/Twist/Atonal/Hen, Lymphoid factors
C    Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C    Tal/Twist/Atonal/Hen, HEN
C    Tal/Twist/Atonal/Hen, Mesp
C    Tal/Twist/Atonal/Hen, Atonal
C    Tal/Twist/Atonal/Hen, Pancreatic factors
C    Hairy, Hairy/E(SPL)
C    Hairy, Fungal regulators
C    Factors with PAS domain
C    Yabby
C    INO
C    HLH domain only
B  Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C    Ubiquitous bHLH-ZIP factors
C    Cell cycle controlling factors, Myc
C    Cell cycle controlling factors, Mad/Max
C    Other bHLH-ZIP factors
B  Other basic domains
C    NF-1
C    RF-X
C    AP-2 (bHSH)
B  Zinc finger
C    Cys4 thyroid hormone receptor-like
C    Cys4 hepatocyte nuclear factor 4-like
C    Cys4 estrogen receptor-like
C    Cys4 nerve growth factor IB-like
C    Cys4 Fushi tarazu-F1-like
C    Cys4 germ cell nuclear factor
C    Cys4 Knirps/DAX1-like
C    Cys4 GATA-factors
C    Cys2His2 SP/KLF family and related proteins
C    Cys2His2 GLI-like
C    Cys2His2 Snail
C    Cys2His2 BTB-ZF factors
C    Cys2His2 BED
C    Cys2His2 PRDM
C    Cys2His2 metabolic regulators in fungi
C    Cys2His2 others
C    Cys2HisCys zinc factors
C    Cys3His zinc factors
C    Cys2CysHis zinc factors
C    CXXC CpG-binding proteins
C    Cys6 metabolic regulators in fungi
C    Other zinc fingers
B  Helix-turn-helix
C    Homeo domain ANTP: HOXL
C    Homeo domain ANTP: NKL
C    Homeo domain Paired-related
C    Homeo domain LIM
C    Homeo domain POU
C    Homeo domain SINE
C    Homeo domain ZF
C    Homeo domain CUT
C    Homeo domain PROS
C    Homeo domain TALE
C    Homeo domain other
C    Fork head/winged helix developmental regulators
C    Fork head/winged helix tissue-specific regulators
C    Fork head/winged helix cell cycle-controlling factors, E2F
C    Fork head/winged helix cell cycle-controlling factors, DP
C    Fork head/winged helix other regulators
C    Heat shock factors
C    Tryptophan clusters Myb, Myb-factors
C    Tryptophan clusters Myb, Myb-like factors
C    Tryptophan clusters Ets-type
C    Tryptophan clusters interferon-regulating factors
C    TEA domain
C    ARID
B  beta-Scaffold factors with minor groove contacts
C    RHR (Rel homology region) Rel/Ankyrin
C    RHR (Rel homology region) Ankyrin only
C    RHR (Rel homology region) NF-AT
C    STAT
C    p53
C    MADS-box regulators of differentiation, MEF-2
C    MADS-box regulators of differentiation, Homeotic genes
C    MADS-box regulators of differentiation, Yeast regulators
C    MADS-box responders to external signals
C    SAND domain-containing proteins
C    TATA-binding proteins
C    HMG SOX
C    HMG TCF-1
C    HMG2-related
C    UBF
C    Other HMG box factors
C    Heteromeric CCAAT factors
C    Grainyhead
C    Cold-shock domain factors, DbpA-like
C    Cold-shock domain factors, YB-1/DbpB-like
C    Cold-shock domain factors, FRG Y2-like
C    Runt
C    MYRF
B  Other transcription factors
C    HMGI(Y)
C    NUPR
E        Line #4
C    Pocket domain Rb
C    Pocket domain CBP
C    T-box
C    DMRT
C    LRRFIP
C    TCP
C    AP2/ERF
C    WRKY
C    LOB
C    Copper-fist proteins fungal regulators
C    Others
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A<b>Prokaryotic type</b>
B  Helix-turn-helix
C    AraC family
C    LysR family
D      THII_3310 RuBisCO operon transcriptional regulator	K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator 
D      THII_0657 transcriptional regulator, LysR family protein	K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator 
C    DeoR family
C    LacI family
C    GntR family
C    TetR/AcrR family
D      THII_1481 TetR family transcriptional regulator	K09017 rutR; TetR/AcrR family transcriptional regulator 
D      THII_3227 TetR family transcriptional regulator	K09017 rutR; TetR/AcrR family transcriptional regulator 
C    Lrp/AsnC family
C    LuxR family
C    MarR family
C    MerR family
C    Fur family
D      THII_2815 ferric uptake regulation protein	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
C    IclR family
C    CRP/FNR family
D      THII_2950 cyclic nucleotide-binding protein	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein 
D      THII_2378 cyclic nucleotide-binding protein	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein 
D      THII_1770 transcriptional regulator, Crp/Fnr family	K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator 
C    Rrf2 family
D      THII_2637 iron-sulfur cluster assembly transcription factor IscR	K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor 
C    ArsR family
D      THII_0864 regulatory protein ArsR	K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor 
C    XRE family
C    PadR family
C    Other families
D      THII_3905 biotin-(acetyl-CoA carboxylase) ligase	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] 
D      THII_2830 transcriptional regulator	K18831 higA; HTH-type transcriptional regulator / antitoxin HigA 
D      THII_2556 Nif-specific regulatory protein	K02584 nifA; Nif-specific regulatory protein 
D      THII_2572 NifA family transcriptional regulator	K02584 nifA; Nif-specific regulatory protein 
D      THII_3027 molybdenum-pterin binding domain protein	K02019 modE; molybdate transport system regulatory protein 
D      THII_3406 XRE family transcriptional regulator	K07726 K07726; putative transcriptional regulator 
B  Ribbon-helix-helix
C    CopG family
C    Other families
B  Other transcription factors
C    BglG family
C    Others
D      THII_2104 BolA-like protein	K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator 
D      THII_2712 HrcA family transcriptional regulator	K03705 hrcA; heat-inducible transcriptional repressor 
D      THII_3837 amino acid-binding protein	K03567 gcvR; glycine cleavage system transcriptional repressor 
D      THII_0648 uracil phosphoribosyltransferase	K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] 
D      THII_0650 putative transcriptional regulator	K07735 algH; putative transcriptional regulator 
D      THII_3473 DnaK suppressor protein	K06204 dksA; RNA polymerase-binding transcription factor 
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#Last updated: June 7, 2024
#<br>Classification taken and modified from <a href="http://www.gene-regulation.com/pub/databases.html#transfac">TRANSFAC 7.0</a>