+F Repair protein KO #

  DNA Repair and Recombination Proteins - Thermococcus kodakarensis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D TK1971 methylated-DNA-protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TK1141 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E TK0535 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E TK0582 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E TK1281 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E TK2140 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E TK0784 ERCC2/XPD/Rad3-related DNA repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors E TK2140 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors E TK0535 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E TK0582 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen E TK2140 ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D TK0535 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen D TK0582 DNA polymerase sliding clamp K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D TK2284 probable 8-oxo-dGTPase, MutT homolog, NUDIX hydrolase family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D TK1971 methylated-DNA-protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E TK2143 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E TK0345 3-methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E TK1141 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E TK0170 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E TK0906 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E TK1252 ssDNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E TK0682 MutS-like DNA mismatch repair ATPase K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E TK2211 DNA double-strand break repair ATPase Rad50 homolog K03546 sbcC; DNA repair protein SbcC/Rad50 E TK2212 DNA repair exonuclease Rad32/Mre11 homolog K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E TK1252 ssDNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor E TK0455 hypothetical protein, conserved, DUF48 family K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E TK1899 RadA/Rad51 recombinase K04483 radA; DNA repair protein RadA E TK2231 RadB recombinase K04484 radB; DNA repair protein RadB E TK1175 archaeal type Holliday junction resolvase K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E TK2211 DNA double-strand break repair ATPase Rad50 homolog K03546 sbcC; DNA repair protein SbcC/Rad50 E TK2212 DNA repair exonuclease Rad32/Mre11 homolog K03547 sbcD; DNA repair protein SbcD/Mre11 E TK2213 bipolar DNA helicase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase E TK2210 5'-3' nuclease, encoded next to Rad50 and Mre11 homologs K25510 nurA; DNA double-strand break repair nuclease NurA [EC:3.1.-.-] E TK1332 RNA helicase Ski2 homolog K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F TK1091 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F TK1252 ssDNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Facilitator E Supressor B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D TK0764 large helicase-related protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D TK1015 large helicase-related protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D TK2284 probable 8-oxo-dGTPase, MutT homolog, NUDIX hydrolase family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TK1736 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D TK1067 hypothetical protein, conserved, containing DUF650 and DUF651 domains K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024