+D
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Transfer RNA Biogenesis - Thermococcus litoralis
%
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
D OCC_13665 hypothetical protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D OCC_08984 ribonuclease P K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D OCC_01154 ribonuclease P K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D OCC_05404 ribonuclease P K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D OCC_02362 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D OCC_11789 tRNA-splicing ligase RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D OCC_11804 archease K24956 ZBTB8OS; protein archease
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
D OCC_11839 tuf; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D OCC_05174 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D OCC_08360 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D OCC_00085 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D OCC_09731 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D OCC_07011 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D OCC_01704 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D OCC_09968 aspC; aspartyl-tRNA synthetase K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D OCC_09124 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D OCC_03457 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D OCC_09269 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D OCC_09566 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D OCC_03017 asparagine synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D OCC_08430 asnC; asparaginyl-tRNA synthase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D OCC_07274 glycyl-tRNA synthetease K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D OCC_11137 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D OCC_05414 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D OCC_11417 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D OCC_05456 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D OCC_06756 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D OCC_04615 phenylalanyl-tRNA synthetase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D OCC_04625 phenylalanyl-tRNA synthetase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D OCC_09556 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D OCC_10649 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D OCC_02169 D-tyrosyl-tRNA(Tyr) deacylase K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
D OCC_08290 threonylcarbamoyladenosine tRNA methylthiotransferase K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
C Methyltransferases
D OCC_07861 tRNA (guanine-N2)-dimethyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D OCC_11035 nol1-nop2-sun family nucleolar protein III K21971 NSUN6; methyltransferase NSUN6 [EC:2.1.1.-]
D OCC_06876 tRNA (guanine-N1)-methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D OCC_04083 tRNA (guanine-N1)-methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D OCC_07079 tRNA methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D OCC_01529 radical SAM protein K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D OCC_03207 tRNA wyosine derivatives biosynthesis protein Taw2 K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114]
D OCC_13026 hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
D OCC_04325 hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
C Psudouridine synthases
D OCC_04630 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D OCC_03667 H/ACA RNA-protein complex protein Cbf5p K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D OCC_09983 tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D OCC_04565 tRNA pseudouridine synthase K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
C Thiolation factors
C KEOPS/EKC complex
D OCC_11739 O-sialoglycoprotein endopeptidase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D OCC_11050 protein kinase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
C Elongator complex
D OCC_09159 hypothetical protein K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
C Elongator related proteins
C Other tRNA modification factors
D OCC_03688 tRNA threonylcarbamoyladenosine biosynthesis protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D OCC_12691 hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1
D OCC_00562 RNA-binding protein K06963 TAN1; tRNA acetyltransferase TAN1
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D OCC_02204 hypothetical protein K09006 K09006; RNA-free ribonuclease P [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D OCC_02362 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D OCC_00015 CCA-adding protein K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72]
B tRNA spricing factors
C tRNA splicing endonucleases
D OCC_06851 tRNA-splicing endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
C tRNA splicing ligases
D OCC_11789 tRNA-splicing ligase RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D OCC_00010 hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D OCC_08794 RNA 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D OCC_09731 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D OCC_06941 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D OCC_08360 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D OCC_09556 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D OCC_10649 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D OCC_11137 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D OCC_00085 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D OCC_09124 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D OCC_03457 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D OCC_09269 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D OCC_09566 alanyl-tRNA editing protein AlaX K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D OCC_05456 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D OCC_07011 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D OCC_05414 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D OCC_11417 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D OCC_05174 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D OCC_01704 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D OCC_04615 phenylalanyl-tRNA synthetase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D OCC_04625 phenylalanyl-tRNA synthetase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D OCC_06756 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D OCC_03017 asparagine synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D OCC_08430 asnC; asparaginyl-tRNA synthase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
D OCC_02169 D-tyrosyl-tRNA(Tyr) deacylase K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferases
C Methyltransferases
D OCC_08330 RNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D OCC_10033 SAM-dependent methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D OCC_08450 hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257]
D OCC_09636 nol1-nop2-sun family nucleolar protein III K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-]
D OCC_05461 tRNA (guanine-N2)-dimethyltransferase K15566 trm10; tRNA (adenine9-N1/guanine9-N1)-methyltransferase [EC:2.1.1.218 2.1.1.221]
D OCC_10594 DNA methyltransferase K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256]
D OCC_04989 tRNA (guanine-N2)-dimethyltransferase K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213]
D OCC_07621 tRNA methyltransferase K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206]
D OCC_11799 tRNA methyltransferase K22446 K22446; tRNA (cytosine49-C5)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D OCC_04630 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D OCC_03667 H/ACA RNA-protein complex protein Cbf5p K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D OCC_09983 tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D OCC_10073 CTU1/ATPBD3 family protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
C KEOPS/EKC complex
D OCC_11739 O-sialoglycoprotein endopeptidase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D OCC_11050 protein kinase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D OCC_08844 hypothetical protein K09119 cgi121; KEOPS complex subunit Cgi121
D OCC_08924 hypothetical protein K09741 pcc1; KEOPS complex subunit Pcc1
C Other tRNA modification factors
D OCC_00557 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D OCC_04832 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D OCC_02069 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D OCC_13400 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D OCC_06816 7-cyano-7-deazaguanine tRNA-ribosyltransferase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D OCC_03587 hypothetical protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D OCC_03597 thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D OCC_13261 thiamin biosynthesis protein thiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D OCC_01114 tRNA(Ile2) 2-agmatinylcytidine synthetase K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22]
D OCC_02074 tRNA(Met) cytidine acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D OCC_03688 tRNA threonylcarbamoyladenosine biosynthesis protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
B tRNA degradation factors
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024