+F Repair protein KO #

  DNA Repair and Recombination Proteins - Vitreoscilla sp. C1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D ADP71_04120 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E ADP71_26320 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ADP71_24080 endonuclease 3 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D ADP71_01410 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ADP71_04020 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D ADP71_04120 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E ADP71_00420 uracil-DNA glycosylase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E ADP71_26320 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ADP71_32210 methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E ADP71_26520 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E ADP71_24080 endonuclease 3 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E ADP71_14600 exodeoxyribonuclease 3 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E ADP71_32440 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E ADP71_28300 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E ADP71_27640 DNA polymerase 1 K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E ADP71_11990 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E ADP71_03870 subunit B of UvrABC system K03702 uvrB; excinuclease ABC subunit B E ADP71_21130 subunit C of UvrABC system K03703 uvrC; excinuclease ABC subunit C E ADP71_30080 UvrD-like DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ADP71_27640 DNA polymerase 1 K02335 polA; DNA polymerase I [EC:2.7.7.7] E ADP71_28300 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F ADP71_33130 subunit beta of DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F ADP71_33140 subunit beta' of DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F ADP71_33510 subunit alpha of DNA-directed RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F ADP71_18270 omega subunit of DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F ADP71_16130 transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E ADP71_30640 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E ADP71_07420 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E ADP71_14920 large subunit of exodeoxyribonuclease 7 K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E ADP71_29340 small subunit of exodeoxyribonuclease 7 K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E ADP71_31270 subunit alpha of DNA polymerase 3 K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E ADP71_23080 subunit beta of DNA polymerase 3 K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E ADP71_08590 subunit delta of DNA polymerase 3 K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E ADP71_24780 subunit delta' of DNA polymerase 3 K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E ADP71_04490 subunit epsilon of DNA polymerase 3 K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ADP71_24140 subunit epsilon of DNA polymerase 3 K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ADP71_09270 subunits gamma and tau of DNA polymerase 3 K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E ADP71_28300 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E ADP71_30080 UvrD-like DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ADP71_21250 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E ADP71_08880 subunit beta of exodeoxyribonuclease V K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E ADP71_08920 subunit gammma of exodeoxyribonuclease V K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E ADP71_03760 subunit alpha of exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E ADP71_08860 DNA recombination and repair protein RecA K03553 recA; recombination protein RecA E ADP71_30980 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ADP71_19930 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ADP71_30990 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E ADP71_05200 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E ADP71_09220 primosomal replication protein PriB K02686 priB; primosomal replication protein N E ADP71_23160 subunit C of exonuclease SbcCD K03546 sbcC; DNA repair protein SbcC/Rad50 E ADP71_23130 subunit D of exonuclease SbcCD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E ADP71_08860 DNA recombination and repair protein RecA K03553 recA; recombination protein RecA E ADP71_05660 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E ADP71_09070 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E ADP71_32440 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E ADP71_01380 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E ADP71_09300 recombination protein RecR K06187 recR; recombination protein RecR E ADP71_08360 DNA recombination/repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E ADP71_18110 putative exonuclease RdgC K03554 rdgC; recombination associated protein RdgC E ADP71_06020 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E ADP71_30980 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E ADP71_19930 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ADP71_30990 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E ADP71_23160 subunit C of exonuclease SbcCD K03546 sbcC; DNA repair protein SbcC/Rad50 E ADP71_23130 subunit D of exonuclease SbcCD K03547 sbcD; DNA repair protein SbcD/Mre11 E ADP71_07700 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F ADP71_07600 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F ADP71_23090 subunit B of DNA gyrase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F ADP71_32780 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F ADP71_05530 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F ADP71_32440 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F ADP71_01380 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F ADP71_09300 recombination protein RecR K06187 recR; recombination protein RecR F ADP71_28300 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F ADP71_22990 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F ADP71_07550 subunit alpha of integration host factor K04764 ihfA; integration host factor subunit alpha F ADP71_24330 subunit beta of integration host factor K05788 ihfB; integration host factor subunit beta E Supressor F ADP71_30460 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F ADP71_11990 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F ADP71_03870 subunit B of UvrABC system K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D ADP71_21030 putative peptidase K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D ADP71_08860 DNA recombination and repair protein RecA K03553 recA; recombination protein RecA D ADP71_08360 DNA recombination/repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D ADP71_21250 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D ADP71_20930 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D ADP71_13050 ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D ADP71_30780 ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D ADP71_01410 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ADP71_04020 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D ADP71_18450 subunit alpha of ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D ADP71_18470 subunit beta of ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024