+F Repair protein KO
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DNA Repair and Recombination Proteins - Vitreoscilla sp. C1
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ADP71_04120 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E ADP71_26320 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E ADP71_24080 endonuclease 3 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D ADP71_01410 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ADP71_04020 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ADP71_04120 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E ADP71_00420 uracil-DNA glycosylase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E ADP71_26320 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E ADP71_32210 methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E ADP71_26520 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E ADP71_24080 endonuclease 3 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E ADP71_14600 exodeoxyribonuclease 3 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E ADP71_32440 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E ADP71_28300 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E ADP71_27640 DNA polymerase 1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E ADP71_11990 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E ADP71_03870 subunit B of UvrABC system K03702 uvrB; excinuclease ABC subunit B
E ADP71_21130 subunit C of UvrABC system K03703 uvrC; excinuclease ABC subunit C
E ADP71_30080 UvrD-like DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ADP71_27640 DNA polymerase 1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
E ADP71_28300 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F ADP71_33130 subunit beta of DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F ADP71_33140 subunit beta' of DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F ADP71_33510 subunit alpha of DNA-directed RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F ADP71_18270 omega subunit of DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F ADP71_16130 transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E ADP71_30640 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E ADP71_07420 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E ADP71_14920 large subunit of exodeoxyribonuclease 7 K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E ADP71_29340 small subunit of exodeoxyribonuclease 7 K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E ADP71_31270 subunit alpha of DNA polymerase 3 K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E ADP71_23080 subunit beta of DNA polymerase 3 K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E ADP71_08590 subunit delta of DNA polymerase 3 K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E ADP71_24780 subunit delta' of DNA polymerase 3 K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E ADP71_04490 subunit epsilon of DNA polymerase 3 K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E ADP71_24140 subunit epsilon of DNA polymerase 3 K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E ADP71_09270 subunits gamma and tau of DNA polymerase 3 K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E ADP71_28300 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E ADP71_30080 UvrD-like DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ADP71_21250 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E ADP71_08880 subunit beta of exodeoxyribonuclease V K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E ADP71_08920 subunit gammma of exodeoxyribonuclease V K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E ADP71_03760 subunit alpha of exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E ADP71_08860 DNA recombination and repair protein RecA K03553 recA; recombination protein RecA
E ADP71_30980 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E ADP71_19930 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ADP71_30990 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E ADP71_05200 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E ADP71_09220 primosomal replication protein PriB K02686 priB; primosomal replication protein N
E ADP71_23160 subunit C of exonuclease SbcCD K03546 sbcC; DNA repair protein SbcC/Rad50
E ADP71_23130 subunit D of exonuclease SbcCD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E ADP71_08860 DNA recombination and repair protein RecA K03553 recA; recombination protein RecA
E ADP71_05660 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E ADP71_09070 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E ADP71_32440 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E ADP71_01380 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E ADP71_09300 recombination protein RecR K06187 recR; recombination protein RecR
E ADP71_08360 DNA recombination/repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E ADP71_18110 putative exonuclease RdgC K03554 rdgC; recombination associated protein RdgC
E ADP71_06020 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
E ADP71_30980 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E ADP71_19930 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ADP71_30990 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E ADP71_23160 subunit C of exonuclease SbcCD K03546 sbcC; DNA repair protein SbcC/Rad50
E ADP71_23130 subunit D of exonuclease SbcCD K03547 sbcD; DNA repair protein SbcD/Mre11
E ADP71_07700 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F ADP71_07600 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F ADP71_23090 subunit B of DNA gyrase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F ADP71_32780 DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F ADP71_05530 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F ADP71_32440 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F ADP71_01380 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F ADP71_09300 recombination protein RecR K06187 recR; recombination protein RecR
F ADP71_28300 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F ADP71_22990 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F ADP71_07550 subunit alpha of integration host factor K04764 ihfA; integration host factor subunit alpha
F ADP71_24330 subunit beta of integration host factor K05788 ihfB; integration host factor subunit beta
E Supressor
F ADP71_30460 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F ADP71_11990 UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F ADP71_03870 subunit B of UvrABC system K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D ADP71_21030 putative peptidase K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D ADP71_08860 DNA recombination and repair protein RecA K03553 recA; recombination protein RecA
D ADP71_08360 DNA recombination/repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D ADP71_21250 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ADP71_20930 recombination regulator RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D ADP71_13050 ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D ADP71_30780 ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D ADP71_01410 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ADP71_04020 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ADP71_18450 subunit alpha of ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D ADP71_18470 subunit beta of ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024