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  Transcription Machinery - Wallemia ichthyophaga

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AEukaryotic type B RNA polymerase II system C RNA polymerase II D Core subunits E J056_001306 DNA-directed RNA polymerase II subunit rpb1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] E J056_001575 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] E J056_003758 DNA-directed RNA polymerase II subunit RPB3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 E J056_003609 DNA-directed RNA polymerase II subunit rpb11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 D Pol II specific subunits E J056_004575 DNA-directed RNA polymerase II subunit rpb4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 E J056_003183 DNA-directed RNA polymerase II subunit rpb7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 D Pol I, II, III common subunits E J056_003135 DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 E J056_004594 DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 E J056_002976 putative DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 D Pol IV and V specific subunits C Basal transcription factors D TFIIA E J056_002648 Transcription initiation factor IIA subunit 2 K03123 TFIIA2; transcription initiation factor TFIIA small subunit D TFIIB E J056_004304 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D TFIID E J056_000874 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein E J056_000354 Putative transcription initiation factor TFIID kDa subunit K23358 TAF1; transcription initiation factor TFIID subunit 1, fungi type [EC:2.3.1.48] E J056_001459 Transcription initiation factor TFIID subunit 2 K03128 TAF2; transcription initiation factor TFIID subunit 2 E J056_002260 Transcription initiation factor TFIID subunit 5 K03130 TAF5; transcription initiation factor TFIID subunit 5 E J056_002845 Transcription initiation factor TFIID subunit 6 K03131 TAF6; transcription initiation factor TFIID subunit 6 E J056_001574 Transcription initiation factor TFIID subunit 7 K03132 TAF7; transcription initiation factor TFIID subunit 7 E J056_004299 Transcription initiation factor TFIID subunit 10 K03134 TAF10; transcription initiation factor TFIID subunit 10 E J056_002210 Transcription initiation factor TFIID subunit 11 K03135 TAF11; transcription initiation factor TFIID subunit 11 E J056_003647 Transcription initiation factor TFIID subunit 12 K03126 TAF12; transcription initiation factor TFIID subunit 12 E J056_003086 Transcription initiation factor TFIID subunit 13 K03127 TAF13; transcription initiation factor TFIID subunit 13 D TFIIE E J056_004780 Transcription initiation factor IIE subunit alpha K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha E J056_002086 Transcription initiation factor IIE subunit beta K03137 TFIIE2; transcription initiation factor TFIIE subunit beta E J056_002087 Transcription initiation factor IIE subunit beta K03137 TFIIE2; transcription initiation factor TFIIE subunit beta D TFIIF E J056_004310 Transcription initiation factor IIF subunit alpha K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha E J056_004596 Transcription initiation factor IIF subunit beta K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] D TFIIH E J056_001891 RNA polymerase II transcription factor B subunit 1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 E J056_004598 Suppressor of stem-loop protein 1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 E J056_004697 General transcription factor IIH subunit 3 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 E J056_002953 RNA polymerase II transcription factor B subunit 2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 E J056_000041 putative DNA repair helicase ercc3 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E J056_003261 DNA repair helicase rad15 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E J056_003243 RNA polymerase II transcription factor B subunit 5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit E J056_003680 Serine/threonine-protein kinase crk1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E J056_002237 RNA polymerase II transcription factor B subunit 3 K10842 MNAT1; CDK-activating kinase assembly factor MAT1 E J056_001846 Cyclin CCL1 K06634 CCNH; cyclin H C Mediator complex D Head E J056_001243 Mediator of RNA polymerase II transcription subunit 6 K15128 MED6; mediator of RNA polymerase II transcription subunit 6 E J056_003126 Mediator of RNA polymerase II transcription subunit 17 K15134 SRB4; mediator of RNA polymerase II transcription subunit 17, fungi type E J056_002642 hypothetical protein K15135 MED18; mediator of RNA polymerase II transcription subunit 18 E J056_000410 hypothetical protein K15139 MED22; mediator of RNA polymerase II transcription subunit 22 D Middle E J056_003970 Mediator of RNA polymerase II transcription subunit 7 K15148 MED7; mediator of RNA polymerase II transcription subunit 7 E J056_002564 Mediator of RNA polymerase II transcription subunit 10 K15151 MED10; mediator of RNA polymerase II transcription subunit 10 D Tail E J056_001444 Mediator of RNA polymerase II transcription subunit 14 K15156 MED14; mediator of RNA polymerase II transcription subunit 14 E J056_004421 SWI/SNF chromatin-remodeling complex subunit sol1 K15158 GAL11; mediator of RNA polymerase II transcription subunit 15, fungi type D CDK-module E J056_000683 Serine/threonine-protein kinase SSN3 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] E J056_002480 Mediator of RNA polymerase II transcription subunit 12 K15163 SRB8; mediator of RNA polymerase II transcription subunit 12, fungi type D Other mediators C Coactivators D SAGA/TFTC/STAGA complex E J056_004111 Histone acetyltransferase GCN5 K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] E J056_001709 Transcription-associated protein 1 K08874 TRRAP; transformation/transcription domain-associated protein E J056_001790 Transcriptional adapter 2 K11314 TADA2A; transcriptional adapter 2-alpha E J056_004789 Chromatin-remodeling complexes subunit ngg1 K11315 TADA3; transcriptional adapter 3 E J056_001459 Transcription initiation factor TFIID subunit 2 K03128 TAF2; transcription initiation factor TFIID subunit 2 E J056_002260 Transcription initiation factor TFIID subunit 5 K03130 TAF5; transcription initiation factor TFIID subunit 5 E J056_002845 Transcription initiation factor TFIID subunit 6 K03131 TAF6; transcription initiation factor TFIID subunit 6 E J056_001574 Transcription initiation factor TFIID subunit 7 K03132 TAF7; transcription initiation factor TFIID subunit 7 E J056_004299 Transcription initiation factor TFIID subunit 10 K03134 TAF10; transcription initiation factor TFIID subunit 10 E J056_003647 Transcription initiation factor TFIID subunit 12 K03126 TAF12; transcription initiation factor TFIID subunit 12 E J056_000130 hypothetical protein K11364 SGF29; SAGA-associated factor 29 E J056_004197 SAGA-associated factor 73 K11365 SGF73; SAGA-associated factor 73 E J056_001160 Chromodomain helicase hrp3 K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] E J056_002613 Ubiquitin carboxyl-terminal hydrolase 22 K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] E J056_001569 Pre-mRNA-splicing factor RSE1 K12830 SF3B3; splicing factor 3B subunit 3 D BAF/PBAF complex E J056_001109 SWI/SNF chromatin-remodeling complex subunit snf5 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 E J056_000106 SWI/SNF and RSC complexes subunit ssr2 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C E J056_000390 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D D SWI/SNF complex E J056_002178 Chromatin structure-remodeling complex subunit snf21 K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] E J056_001109 SWI/SNF chromatin-remodeling complex subunit snf5 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 E J056_002074 SWI/SNF and RSC complexes subunit arp9 K11768 ARP9; actin-related protein 9 D RSC complex E J056_001675 Chromatin structure-remodeling complex subunit rsc1 K11756 RSC1_2; chromatin structure-remodeling complex subunit RSC1/2 E J056_000062 Chromatin structure-remodeling complex subunit RSC7 K11761 NPL6; chromatin structure-remodeling complex protein RSC7 E J056_002074 SWI/SNF and RSC complexes subunit arp9 K11768 ARP9; actin-related protein 9 E J056_000091 SWI/SNF chromatin-remodeling complex subunit snf5 K11770 SFH1; chromatin structure-remodeling complex subunit SFH1 E J056_002178 Chromatin structure-remodeling complex subunit snf21 K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] D Others C Other transcription-related factors D Transcription elongation factors E J056_004132 Transcription elongation factor S-II K03145 TFIIS; transcription elongation factor S-II E J056_004812 Transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5 E J056_002722 Transcription elongation factor SPT6 K11292 SUPT6H; transcription elongation factor SPT6 D Transcription termination factor E J056_000598 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 E J056_002164 Protein cft1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 E J056_003625 Endoribonuclease YSH1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E J056_001884 mRNA 3'-end-processing protein YTH1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 E J056_002933 Serine/threonine-protein phosphatase PP-Z K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E J056_000613 Serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E J056_002024 Symplekin K06100 SYMPK; symplekin E J056_002813 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] E J056_000367 Protein RAI1 K14845 RAI1; RAT1-interacting protein E J056_000828 Helicase sen1 K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] E J056_004121 Peptidyl-prolyl cis-trans isomerase pin1 K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] D PAF1 complex E J056_004552 RNA polymerase II-associated protein 1-like protein K15174 PAF1; RNA polymerase II-associated factor 1 E J056_004626 Cell division control protein 73 K15175 CDC73; parafibromin E J056_004208 Tetratricopeptide repeat protein 1 K15176 CTR9; RNA polymerase-associated protein CTR9 E J056_001717 RNA polymerase-associated protein LEO1 K15177 LEO1; RNA polymerase-associated protein LEO1 E J056_000758 RNA polymerase-associated protein K15178 RTF1; RNA polymerase-associated protein RTF1 D NELF complex D Super elongation complex (SEC) D Little elongation complex (LEC) D Brd4/P-TEFb complex D BUR kinase complex E J056_004569 Serine/threonine-protein kinase bur1 K15562 BUR1; serine/threonine-protein kinase BUR1 [EC:2.7.11.22 2.7.11.23] D CTDK-I complex E J056_000894 CTD kinase subunit alpha K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23] E J056_001430 CTD kinase subunit beta K15564 CTK2; CTD kinase subunit beta E J056_003768 CTD kinase subunit gamma K15565 CTK3; CTD kinase subunit gamma D 7SK RNP complex E J056_002666 putative methyltransferase C2A9.10 K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] D DBIRD complex D Others E J056_004803 putative helicase mot1 K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] E J056_000360 Negative cofactor 2 complex subunit beta K21751 DR1; down-regulator of transcription 1 E J056_002363 Dr1-associated corepressor K21752 DRAP1; Dr1-associated corepressor E J056_003339 RNA polymerase II subunit A C-terminal domain phosphatase K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] E J056_000527 hypothetical protein K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] E J056_002223 Transcription factor IWS1 K17498 SPN1; transcription factor SPN1 E J056_000815 RNA polymerase II-associated protein 1 K20826 RPAP1; RNA polymerase II-associated protein 1 E J056_001070 Transcriptional repressor rco-1 K06666 TUP1; general transcriptional corepressor TUP1 E J056_001170 General transcriptional corepressor ssn6 K06665 SSN6; general transcriptional corepressor CYC8 E J056_002827 Serum response factor-like protein B K12412 MCM1; pheromone receptor transcription factor E J056_004199 GTPase npa3 K24104 GPN; GPN-loop GTPase E J056_003866 GPN-loop GTPase 2-like protein K24104 GPN; GPN-loop GTPase E J056_000264 GPN-loop GTPase 3-like protein K24104 GPN; GPN-loop GTPase B RNA polymerase III system C RNA polymerase III D Core subunits E J056_001043 DNA-directed RNA polymerase III subunit rpc1 K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] E J056_003774 DNA-directed RNA polymerase III subunit RPC2 K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] E J056_004247 DNA-directed RNA polymerases I and III subunit RPAC1 K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 E J056_001144 DNA-directed RNA polymerases I and III subunit RPAC2 K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 D Pol III specific subunits E J056_003331 DNA-directed RNA polymerase III subunit RPC3 K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 E J056_000364 DNA-directed RNA polymerase III subunit RPC4 K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 E J056_000006 putative DNA-directed RNA polymerase III subunit rpc6 K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 E J056_000592 hypothetical protein K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 E J056_001108 DNA-directed RNA polymerase III subunit rpc8 K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 E J056_001915 DNA-directed RNA polymerase III subunit RPC9 K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 E J056_003508 DNA-directed RNA polymerase III subunit RPC10 K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 D Pol I, II, III common subunits E J056_003135 DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 E J056_004594 DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 E J056_002976 putative DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 C Basal transcription factors D TFIIIA E J056_004173 Transcription factor IIIA K09191 GTF3A; general transcription factor IIIA D TFIIIB E J056_000874 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein E J056_003831 Transcription factor IIIB 60 kDa subunit K15196 BRF1; transcription factor IIIB 90 kDa subunit E J056_000507 Transcription factor TFIIIB component B' K15198 BDP1; transcription factor TFIIIB component B'' D TFIIIC E J056_001479 Transcription factor tau subunit sfc4 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) E J056_003543 Transcription factor tau subunit sfc1 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) D TFIIIC, fungi type E J056_003543 Transcription factor tau subunit sfc1 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) E J056_001479 Transcription factor tau subunit sfc4 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) E J056_002451 Transcription factor tau subunit sfc6 K15205 TFC6; transcription factor C subunit 6 C Other transcription-related factors D snRNA-activating protein complex (SNAPc) D Octamer transcription factors D Others E J056_003318 Zinc finger protein K20828 ZNF143_76; zinc finger protein 143/76 E J056_002262 hypothetical protein K25817 MAF1; repressor of RNA polymerase III transcription MAF1 B RNA polymerase I system C RNA polymerase I D Core subunits E J056_002367 putative DNA-directed RNA polymerase I subunit RPA2 K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] E J056_004247 DNA-directed RNA polymerases I and III subunit RPAC1 K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 E J056_001144 DNA-directed RNA polymerases I and III subunit RPAC2 K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 D Pol I specific subunits E J056_002208 DNA-directed RNA polymerase I subunit rpa49 K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 E J056_002617 DNA-directed RNA polymerase I subunit rpa43 K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 E J056_003328 DNA-directed RNA polymerase I subunit RPA12 K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 D Pol I, II, III common subunits E J056_003135 DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 E J056_004594 DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 E J056_002976 putative DNA-directed RNA polymerases I, II, and III subunit RPABC3 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 C Basal transcription factors D SL1/TIF-1B E J056_000874 TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein C Other transcription-related factors D UBF D Transcription initiation factors E J056_001258 RNA polymerase I-specific transcription initiation factor rrn3 K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 E J056_003007 hypothetical protein K15219 RRN7; RNA polymerase I-specific transcription initiation factor RRN7 D Transcription elongation factors E J056_004812 Transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5 D NoRC (nucleolar remodeling complex) E J056_002790 ISWI chromatin-remodeling complex ATPase ISW2 K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] D CTDK-I complex E J056_000894 CTD kinase subunit alpha K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23] E J056_001430 CTD kinase subunit beta K15564 CTK2; CTD kinase subunit beta E J056_003768 CTD kinase subunit gamma K15565 CTK3; CTD kinase subunit gamma D Transcription termination factors D Others # AProkaryotic type B Bacterial type C RNA polymerase D Core subunits D Sigma factors C Other transcription-related factors D RNA polymerase-associated proteins D Transcription elongation factors D Transcription termination factor B Archaeal type C RNA polymerase D Core subunits C Basal transcription factors D TFB E J056_004304 Transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D TFE E J056_004780 Transcription initiation factor IIE subunit alpha K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D TFS ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024