+E Transcription factors KO
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Transcription Factors - Xylella fastidiosa M12
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
C LysR family
D Xfasm12_0871 oxidative stress transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Xfasm12_2017 transcriptional regulator (LysR family) K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
C DeoR family
C LacI family
D Xfasm12_0806 transcriptional regulator LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
C TetR/AcrR family
C Lrp/AsnC family
C LuxR family
C MarR family
D Xfasm12_0184 transcriptional regulator (MarR family) K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
C MerR family
C Fur family
D Xfasm12_1516 transcriptional regulator (Fur family) K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Xfasm12_2029 transcriptional regulator Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
C CRP/FNR family
D Xfasm12_0879 cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
C ArsR family
C XRE family
C PadR family
C Other families
D Xfasm12_0329 conserved hypothetical protein K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D Xfasm12_1229 bifunctional transcriptional repressor of the biotin operon/biotin acetyl-CoA-carboxylase synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Xfasm12_0976 DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Xfasm12_1129 putative transcriptional regulator K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D Xfasm12_1291 anti-toxin protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
C Others
D Xfasm12_1609 morphogene BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D Xfasm12_1473 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Xfasm12_0047 transcriptional repressor K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Xfasm12_1514 heat-inducible transcriptional repressor K03705 hrcA; heat-inducible transcriptional repressor
D Xfasm12_1898 transcriptional regulator K03567 gcvR; glycine cleavage system transcriptional repressor
D Xfasm12_1428 transcriptional regulator K07735 algH; putative transcriptional regulator
D Xfasm12_0307 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Xfasm12_1910 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR
D Xfasm12_2056 MraZ protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0