+E Transcription factors KO #

  Transcription Factors - Xylella fastidiosa M12

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family D Xfasm12_0871 oxidative stress transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Xfasm12_2017 transcriptional regulator (LysR family) K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator C DeoR family C LacI family D Xfasm12_0806 transcriptional regulator LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family C TetR/AcrR family C Lrp/AsnC family C LuxR family C MarR family D Xfasm12_0184 transcriptional regulator (MarR family) K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB C MerR family C Fur family D Xfasm12_1516 transcriptional regulator (Fur family) K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Xfasm12_2029 transcriptional regulator Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D Xfasm12_0879 cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein C Rrf2 family C ArsR family C XRE family C PadR family C Other families D Xfasm12_0329 conserved hypothetical protein K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D Xfasm12_1229 bifunctional transcriptional repressor of the biotin operon/biotin acetyl-CoA-carboxylase synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Xfasm12_0976 DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Xfasm12_1129 putative transcriptional regulator K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D Xfasm12_1291 anti-toxin protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D Xfasm12_1609 morphogene BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Xfasm12_1473 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Xfasm12_0047 transcriptional repressor K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Xfasm12_1514 heat-inducible transcriptional repressor K03705 hrcA; heat-inducible transcriptional repressor D Xfasm12_1898 transcriptional regulator K03567 gcvR; glycine cleavage system transcriptional repressor D Xfasm12_1428 transcriptional regulator K07735 algH; putative transcriptional regulator D Xfasm12_0307 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Xfasm12_1910 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Xfasm12_2056 MraZ protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0