+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Xylella fastidiosa M12
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D Xfasm12_1444 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D Xfasm12_0591 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C Xfasm12_1445 GTP binding protein K03595 era; GTPase
C Xfasm12_1582 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C Xfasm12_0307 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
C Xfasm12_0202 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C Xfasm12_1904 transcription termination factor K03625 nusB; transcription antitermination protein NusB
C Xfasm12_2201 transcription antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D Xfasm12_0541 ribosomal small subunit pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Xfasm12_1352 rRNA (adenine-N(6)-)-methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Xfasm12_1927 Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Xfasm12_0297 putative methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Xfasm12_0162 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Xfasm12_1035 glucose inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Xfasm12_2055 S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Xfasm12_1750 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D Xfasm12_0988 tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Xfasm12_0075 cell division protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D Xfasm12_1884 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Xfasm12_1828 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Xfasm12_0037 transformation competence-related protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D Xfasm12_2214 putative N-6 adenine-specific DNA methylase / putative SAM-dependent methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D Xfasm12_2090 conserved hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D Xfasm12_1780 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Xfasm12_1527 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Xfasm12_1613 pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Xfasm12_2175 pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Xfasm12_1918 Pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C Xfasm12_1798 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C Xfasm12_2103 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C Xfasm12_0088 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C Xfasm12_1402 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C Xfasm12_0721 Site-specific DNA-methyltransferase (adenine-specific) K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C Xfasm12_0891 conserved hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C Xfasm12_1444 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Xfasm12_2176 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C Xfasm12_0470 ribonuclease G (cytoplasmic axial filament protein) K08301 rng; ribonuclease G [EC:3.1.26.-]
C Xfasm12_1427 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C Xfasm12_0220 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C Xfasm12_1445 GTP binding protein K03595 era; GTPase
C Xfasm12_1746 putative GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C Xfasm12_1775 GTP-binding protein K03977 engA; GTPase
C Xfasm12_1582 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C Xfasm12_0069 GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C Xfasm12_1935 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C Xfasm12_1874 GTP diphosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C Xfasm12_0204 ribosomal-binding factor A K02834 rbfA; ribosome-binding factor A
C Xfasm12_0201 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C Xfasm12_1380 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
C Xfasm12_1949 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C Xfasm12_0076 putative RNA-binding protein containing KH domain K07574 yhbY; RNA-binding protein
C Xfasm12_0473 conserved hypothetical protein K09889 yjgA; ribosome-associated protein
C Xfasm12_0755 sigma-54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C Xfasm12_2204 GTP-binding protein K06942 ychF; ribosome-binding ATPase
C Xfasm12_1208 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024