+D
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Transfer RNA Biogenesis - Xylella fastidiosa M12
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D Xfasm12_2182 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
C CCA adding factors
D Xfasm12_0715 tRNA nucleotidyltransferase (CCA-adding enzyme) K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D Xfasm12_2028 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Xfasm12_1794 Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Xfasm12_1578 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Xfasm12_1376 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Xfasm12_1753 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Xfasm12_0694 Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Xfasm12_0124 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Xfasm12_0457 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Xfasm12_1108 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D Xfasm12_0101 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Xfasm12_2135 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Xfasm12_2099 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Xfasm12_1477 Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Xfasm12_0311 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Xfasm12_0110 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Xfasm12_1422 Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Xfasm12_2095 Phenylalanine--tRNA ligase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Xfasm12_2094 Phenylalanine--tRNA ligase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Xfasm12_0142 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Xfasm12_1811 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
C AARS associated factors
D Xfasm12_1214 histidine triad-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D Xfasm12_2060 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D Xfasm12_0726 Pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Xfasm12_0205 Pseudouridylate synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D Xfasm12_1935 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Xfasm12_0071 tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Xfasm12_2312 thiophene and furan oxidation protein K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Xfasm12_0921 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D Xfasm12_0159 sulfite synthesis pathway protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D Xfasm12_2315 ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Xfasm12_R0020 Bacterial RNase P class A as predicted by Rfam (RF00010), score 351.90 K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D Xfasm12_1351 ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D Xfasm12_0845 tRNA nucleotidyltransferase K00989 rph; ribonuclease PH [EC:2.7.7.56]
D Xfasm12_2088 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D Xfasm12_2182 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
C CCA adding factors
D Xfasm12_0715 tRNA nucleotidyltransferase (CCA-adding enzyme) K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
D Xfasm12_1913 ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D Xfasm12_1376 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Xfasm12_1794 Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D Xfasm12_0142 Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Xfasm12_1811 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Xfasm12_2099 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Xfasm12_1578 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Xfasm12_0457 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Xfasm12_0101 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Xfasm12_0110 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Xfasm12_1753 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Xfasm12_1477 Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Xfasm12_1108 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Xfasm12_1012 Glycine--tRNA ligase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Xfasm12_1013 Glycine--tRNA ligase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Xfasm12_0311 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Xfasm12_2028 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Xfasm12_0694 Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Xfasm12_0124 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Xfasm12_2095 Phenylalanine--tRNA ligase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Xfasm12_2094 Phenylalanine--tRNA ligase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Xfasm12_1422 Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Xfasm12_2135 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
B tRNA modification factors
C Deaminases
D Xfasm12_0328 cytosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D Xfasm12_1844 tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
C Methylthiotransferases
D Xfasm12_1947 bifunctional enzyme involved in thiolation and methylation of tRNA K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D Xfasm12_2060 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Xfasm12_0089 tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Xfasm12_2312 thiophene and furan oxidation protein K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Xfasm12_1635 tRNA/rRNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D Xfasm12_1000 tRNA/rRNA methylase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
C Psudouridine synthases
D Xfasm12_0726 Pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Xfasm12_0205 Pseudouridylate synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D Xfasm12_0783 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Xfasm12_1733 conserved hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D Xfasm12_2134 conserved hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein
D Xfasm12_0376 conserved hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D Xfasm12_0921 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Xfasm12_0071 tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Xfasm12_0673 S-adenosylmethionine: tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Xfasm12_1107 transcriptional regulator K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Xfasm12_0164 6-pyruvoyltetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Xfasm12_1071 radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Xfasm12_1548 conserved hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Xfasm12_1466 conserved hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D Xfasm12_0191 Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Xfasm12_1653 cell cycle protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Xfasm12_0872 conserved hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Xfasm12_1935 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Xfasm12_1803 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Xfasm12_2083 conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Xfasm12_0884 molybdopterin biosynthesis protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
C Xfasm12_0986 Exoribonuclease II K12573 rnr; ribonuclease R [EC:3.1.13.1]
C Xfasm12_0207 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024