+E Transcription factors KO
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Transcription Factors - Xanthomonas oryzae pv. oryzae KACC 10331
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D XOO0607 Dcm; Site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D XOO0949 transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D XOO1539 ada; DNA methylation and regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D XOO3731 pcaQ; transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D XOO4336 metR; transcriptional regulator metE/metH family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D XOO2198 LysR; Transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D XOO3647 oxyR; oxidative stress transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D XOO2038 oxyR; hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D XOO3407 cysB; cystathionine beta-synthase K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D XOO4566 fldY; transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D XOO1369 ampR; transcriptional activator ampR family K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D XOO3253 trpI; transcriptional regulator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator
C DeoR family
C LacI family
D XOO0252 PurR; Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XOO2069 PurR; Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XOO3918 PurR; Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XOO0190 PurR; Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XOO4418 salR; sal operon transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XOO2165 transcriptional regulator lacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D XOO2809 PurR; Transcriptional regulators K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
C GntR family
D XOO2395 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D XOO3920 PhnF; Transcriptional regulators K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D XOO3735 vanR; transcriptional regulator gntR family K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
C TetR/AcrR family
D XOO0929 AcrR; transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D XOO3020 unknown protein K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor
D XOO4448 AcrR; TetR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D XOO0692 lrp; leucine responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D XOO0268 Lrp; Transcriptional regulators K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D XOO1268 ahyR; transcriptional regulator AhyR/AsaR family K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
C MarR family
D XOO4601 slyA; transcriptional regulator for cryptic hemolysin K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D XOO2345 MarR; Transcriptional regulators K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D XOO4455 MarR; Transcriptional regulators K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D XOO1257 soxR; transcriptional regulator soxR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D XOO2027 fur; ferric uptake regulator Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D XOO1505 Fur; Fe2+/Zn2+ uptake regulation proteins K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D XOO0488 pcaR; transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D XOO4158 clp; CAP-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D XOO2249 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
C ArsR family
C XRE family
D XOO1841 transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D XOO2206 TroR; Mn-dependent transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D XOO1190 blaI; transcriptional regulator blaI family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D XOO0428 birA; biotin acetyl-CoA-carboxylase synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D XOO0548 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D XOO0891 prpR; propionate catabolism regulatory protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D XOO2589 fleQ; transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D XOO0386 transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D XOO4145 putA; bifunctional PutA protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D XOO3868 conserved hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D XOO4807 BolA; Stress-induced morphogen (activity unknown) K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D XOO0504 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D XOO2029 Heat-inducible transcription repressor hrcA K03705 hrcA; heat-inducible transcriptional repressor
D XOO2924 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D XOO3648 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D XOO1425 algH; Putative transcriptional regulator K07735 algH; putative transcriptional regulator
D XOO2682 dksA; DnaK supressor K06204 dksA; RNA polymerase-binding transcription factor
D XOO3858 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D XOO3834 conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0