+E Transcription factors KO #

  Transcription Factors - Xanthomonas oryzae pv. oryzae KACC 10331

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D XOO0607 Dcm; Site-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D XOO0949 transcriptional regulator K07506 K07506; AraC family transcriptional regulator D XOO1539 ada; DNA methylation and regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D XOO3731 pcaQ; transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D XOO4336 metR; transcriptional regulator metE/metH family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D XOO2198 LysR; Transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D XOO3647 oxyR; oxidative stress transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D XOO2038 oxyR; hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D XOO3407 cysB; cystathionine beta-synthase K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D XOO4566 fldY; transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D XOO1369 ampR; transcriptional activator ampR family K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D XOO3253 trpI; transcriptional regulator K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator C DeoR family C LacI family D XOO0252 PurR; Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XOO2069 PurR; Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XOO3918 PurR; Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XOO0190 PurR; Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XOO4418 salR; sal operon transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XOO2165 transcriptional regulator lacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D XOO2809 PurR; Transcriptional regulators K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor C GntR family D XOO2395 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D XOO3920 PhnF; Transcriptional regulators K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D XOO3735 vanR; transcriptional regulator gntR family K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator C TetR/AcrR family D XOO0929 AcrR; transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D XOO3020 unknown protein K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor D XOO4448 AcrR; TetR family transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D XOO0692 lrp; leucine responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D XOO0268 Lrp; Transcriptional regulators K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D XOO1268 ahyR; transcriptional regulator AhyR/AsaR family K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA C MarR family D XOO4601 slyA; transcriptional regulator for cryptic hemolysin K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D XOO2345 MarR; Transcriptional regulators K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D XOO4455 MarR; Transcriptional regulators K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D XOO1257 soxR; transcriptional regulator soxR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D XOO2027 fur; ferric uptake regulator Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D XOO1505 Fur; Fe2+/Zn2+ uptake regulation proteins K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D XOO0488 pcaR; transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D XOO4158 clp; CAP-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D XOO2249 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family C ArsR family C XRE family D XOO1841 transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family C Other families D XOO2206 TroR; Mn-dependent transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D XOO1190 blaI; transcriptional regulator blaI family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D XOO0428 birA; biotin acetyl-CoA-carboxylase synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D XOO0548 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D XOO0891 prpR; propionate catabolism regulatory protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D XOO2589 fleQ; transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D XOO0386 transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D XOO4145 putA; bifunctional PutA protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D XOO3868 conserved hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D XOO4807 BolA; Stress-induced morphogen (activity unknown) K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D XOO0504 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D XOO2029 Heat-inducible transcription repressor hrcA K03705 hrcA; heat-inducible transcriptional repressor D XOO2924 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D XOO3648 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D XOO1425 algH; Putative transcriptional regulator K07735 algH; putative transcriptional regulator D XOO2682 dksA; DnaK supressor K06204 dksA; RNA polymerase-binding transcription factor D XOO3858 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR D XOO3834 conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0