+E Ribosome biogenesis KO
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Ribosome Biogenesis - Acidovorax sp. RAC01
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D BSY15_2607 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D BSY15_1253 lipopolysaccharide kinase family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D BSY15_2531 exonuclease family protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C BSY15_2608 era; GTP-binding protein Era K03595 era; GTPase
C BSY15_686 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C BSY15_1013 prokaryotic dksA/traR C4-type zinc finger family protein K06204 dksA; RNA polymerase-binding transcription factor
C BSY15_2141 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C BSY15_3993 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C BSY15_234 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C BSY15_1811 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D BSY15_2835 pseudouridine synthase family protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D BSY15_1368 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BSY15_2505 ubiE/COQ5 methyltransferase family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D BSY15_1819 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D BSY15_2375 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BSY15_1372 RNA methyltransferase, RsmE family protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BSY15_1523 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BSY15_2146 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BSY15_1825 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BSY15_2590 tetrapyrrole (Corrin/Porphyrin) Methylases family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BSY15_840 S4 domain protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D BSY15_3690 RNA 2'-O ribose methyltransferase substrate binding family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BSY15_2905 ftsJ-like methyltransferase family protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D BSY15_3357 putative SPOUT methyltransferase family protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BSY15_2138 S-adenosylmethionine-dependent methyltransferase family protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D BSY15_3631 methyltransferase small domain protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D BSY15_837 ribosomal RNA small subunit methyltransferase D, RsmJ family protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D BSY15_1110 THUMP domain protein K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D BSY15_2814 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BSY15_840 S4 domain protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D BSY15_3975 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D BSY15_3866 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D BSY15_3134 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D BSY15_2812 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BSY15_2586 pseudouridine synthase, RluA family protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D BSY15_2810 pseudouridine synthase, RluA family protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BSY15_204 pseudouridine synthase family protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D BSY15_2129 S4 domain protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D BSY15_1935 pseudouridine synthase family protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C BSY15_1172 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C BSY15_2523 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C BSY15_4121 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C BSY15_2266 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C BSY15_3420 prmB; (glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C BSY15_2755 araC-like ligand binding domain protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C BSY15_2607 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C BSY15_2585 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12]
C BSY15_3359 ribonuclease, Rne/Rng family domain protein K08301 rng; ribonuclease G [EC:3.1.26.-]
C BSY15_2311 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C BSY15_1963 DEAD/DEAH box helicase family protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
B GTPases
C BSY15_2608 era; GTP-binding protein Era K03595 era; GTPase
C BSY15_2528 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C BSY15_2821 engA; ribosome-associated GTPase EngA K03977 engA; GTPase
C BSY15_686 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C BSY15_219 ylqF; ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A
C BSY15_2823 hflX; GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C BSY15_1165 tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C BSY15_616 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C BSY15_3991 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C BSY15_3994 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C BSY15_3356 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
C BSY15_1972 putative rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor
C BSY15_2904 CRS1 / YhbY domain protein K07574 yhbY; RNA-binding protein
C BSY15_333 hypothetical protein K09889 yjgA; ribosome-associated protein
C BSY15_1158 raiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C BSY15_2291 50S ribosome-binding GTPase family protein K06942 ychF; ribosome-binding ATPase
C BSY15_2592 hypothetical protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024