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Transfer RNA Biogenesis - Amycolatopsis japonica
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D AJAP_29365 guanine-specific ribonuclease N1 and T1 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D AJAP_39890 rtcB; RNA-splicing ligase RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D AJAP_13445 Hypothetical protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AJAP_10280 proS; Proline-tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D AJAP_11475 ileS; Isoleucine-tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D AJAP_42130 leuS; Leucine-tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AJAP_19605 Hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AJAP_23610 Hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AJAP_03925 metG; Methionine-tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AJAP_06015 argS1; Arginine-tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AJAP_29485 argS2; Arginine-tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AJAP_01555 Conserved putative membrane protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D AJAP_39225 lysS1; Lysine-tRNA ligase 1 K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D AJAP_33555 lysX; Lysylphosphatidylglycerol biosynthesis bifunctional protein LysX K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D AJAP_25430 aspS; Aspartate-tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D AJAP_25305 alaS; Alanine-tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D AJAP_23580 Hypothetical protein K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D AJAP_29020 glyQS; Glycine-tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D AJAP_16545 thrS; Threonine-tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D AJAP_01010 serS; Serine-tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D AJAP_38910 cysS; Cysteine-tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D AJAP_29610 valS; Valine-tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D AJAP_35090 Hypothetical protein K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AJAP_14155 pheS; Phenylalanine-tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D AJAP_14160 pheT; Phenylalanine-tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D AJAP_14250 tyrS; Tyrosine-tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AJAP_04895 trpS1; Tryptophan-tRNA ligase 1 K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D AJAP_35330 trpS2; Tryptophan-tRNA ligase 2 K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D AJAP_26075 Hypothetical protein K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D AJAP_29135 protein kinase C inhibitor K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D AJAP_20110 trmI; tRNA (adenine(58)-N(1))-methyltransferase TrmI K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D AJAP_41780 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D AJAP_36160 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D AJAP_27740 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D AJAP_03435 Hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AJAP_08125 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D AJAP_06110 Hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D AJAP_27070 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D AJAP_39670 tRNAHis guanylyltransferase K10761 THG1; tRNA(His) guanylyltransferase [EC:2.7.7.79]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D AJAP_42320 Hypothetical protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D AJAP_06535 rph; Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D AJAP_25695 Hypothetical protein K03684 rnd; ribonuclease D [EC:3.1.13.5]
D AJAP_29365 guanine-specific ribonuclease N1 and T1 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D AJAP_39890 rtcB; RNA-splicing ligase RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D AJAP_27725 Hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D AJAP_11170 Hypothetical protein K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D AJAP_42130 leuS; Leucine-tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AJAP_10280 proS; Proline-tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D AJAP_14250 tyrS; Tyrosine-tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AJAP_04895 trpS1; Tryptophan-tRNA ligase 1 K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D AJAP_35330 trpS2; Tryptophan-tRNA ligase 2 K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D AJAP_16545 thrS; Threonine-tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D AJAP_11475 ileS; Isoleucine-tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D AJAP_01555 Conserved putative membrane protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D AJAP_39225 lysS1; Lysine-tRNA ligase 1 K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D AJAP_33555 lysX; Lysylphosphatidylglycerol biosynthesis bifunctional protein LysX K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D AJAP_25305 alaS; Alanine-tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D AJAP_29610 valS; Valine-tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D AJAP_19605 Hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AJAP_23610 Hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AJAP_03925 metG; Methionine-tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AJAP_01010 serS; Serine-tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D AJAP_25430 aspS; Aspartate-tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D AJAP_38910 cysS; Cysteine-tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D AJAP_13445 Hypothetical protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AJAP_06015 argS1; Arginine-tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AJAP_29485 argS2; Arginine-tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AJAP_14155 pheS; Phenylalanine-tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D AJAP_14160 pheT; Phenylalanine-tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D AJAP_35090 Hypothetical protein K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AJAP_23580 Hypothetical protein K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
D AJAP_26075 Hypothetical protein K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D AJAP_05190 ebsC; YbaK/EbsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D AJAP_40285 Hypothetical protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
C Methylthiotransferases
D AJAP_27095 miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D AJAP_41780 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D AJAP_09865 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D AJAP_20300 Hypothetical protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D AJAP_14150 Hypothetical protein K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D AJAP_36160 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D AJAP_27740 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D AJAP_24150 ribosomal pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
C Thiolation factors
D AJAP_08130 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D AJAP_09280 Hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein
D AJAP_03435 Hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AJAP_08125 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AJAP_40515 Hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D AJAP_27070 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D AJAP_01950 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D AJAP_01865 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D AJAP_01860 organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D AJAP_39330 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D AJAP_35965 Hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D AJAP_06110 Hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D AJAP_35955 gcp; Putative tRNA threonylcarbamoyladenosine biosynthesis protein Gcp K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D AJAP_35980 Hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
B tRNA degradation factors
C AJAP_27715 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024