+E Transcription factors KO #

  Transcription Factors - Alteromonas mediterranea U4

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D I607_13920 putative DNA-binding protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D I607_18165 ada regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D I607_06985 DNA-binding transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D I607_18820 DNA-binding transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D I607_05210 transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D I607_16635 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D I607_05215 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D I607_04060 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D I607_00805 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D I607_09590 cysB; transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D I607_09575 transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D I607_15890 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D I607_18090 LysR family transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D I607_05820 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D I607_11290 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D I607_01145 glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D I607_19085 galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D I607_01080 repressor GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D I607_11605 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D I607_17930 galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D I607_01900 LacI family transcriptional repressor K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG C GntR family D I607_04135 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D I607_12165 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D I607_14295 pyruvate dehydrogenase complex transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D I607_15850 GntR family transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor C TetR/AcrR family D I607_05235 transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D I607_00215 slmA; division inhibitor protein K05501 slmA; TetR/AcrR family transcriptional regulator D I607_07285 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D I607_16330 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D I607_06320 transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D I607_02160 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D I607_15955 DNA-binding transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D I607_10430 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D I607_05350 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D I607_17035 regulatory protein, AsnC/Lrp K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D I607_15740 transcriptional regulator K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation C MarR family D I607_05520 transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D I607_04075 transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D I607_13910 Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D I607_04775 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D I607_13580 MerR family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D I607_09900 merR family transcriptional regulator K19592 golS; MerR family transcriptional regulator, gold-responsive activator of gol and ges genes C Fur family D I607_10910 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D I607_17785 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D I607_16335 cAMP-binding protein - catabolite protein activator and regulatory subunit of cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D I607_11955 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D I607_10150 fumarate/nitrate reduction transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D I607_13045 BadM/Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D I607_00395 YhdE protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D I607_14745 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D I607_09860 regulatory protein ArsR K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D I607_09875 regulatory protein ArsR K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D I607_11310 arsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family D I607_03425 transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family C Other families D I607_11495 DNA-binding transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D I607_13655 BlaI family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D I607_16600 bifunctional biotin operon repressor/biotin synthetase BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D I607_18405 transcriptional activator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D I607_19452 transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D I607_18985 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D I607_09390 XRE family transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D I607_05035 polar flagellar protein FlaK K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D I607_10720 helix-turn-helix domain-containing protein K07726 K07726; putative transcriptional regulator D I607_00340 DNA-binding protein K07726 K07726; putative transcriptional regulator D I607_19035 putative transcriptional regulator, XRE family protein K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D I607_17225 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor B Other transcription factors C BglG family C Others D I607_03175 BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D I607_19170 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D I607_09985 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D I607_20807 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D I607_19477 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D I607_16445 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D I607_05335 transcriptional regulatory protein tyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D I607_10550 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D I607_13605 PaaX-like protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D I607_05310 sigma-54 depedent transcriptional activator PspF K03974 pspF; psp operon transcriptional activator D I607_05325 phage shock protein C K03973 pspC; phage shock protein C D I607_16020 phage shock protein C K03973 pspC; phage shock protein C D I607_19045 hypothetical protein K07733 alpA; prophage regulatory protein D I607_10275 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D I607_14570 transcription regulator K07735 algH; putative transcriptional regulator D I607_17330 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D I607_12585 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D I607_14445 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0