+E Transcription factors KO
#
Transcription Factors - Alteromonas mediterranea U4
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D I607_13920 putative DNA-binding protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D I607_18165 ada regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D I607_06985 DNA-binding transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D I607_18820 DNA-binding transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D I607_05210 transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D I607_16635 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D I607_05215 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D I607_04060 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D I607_00805 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D I607_09590 cysB; transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D I607_09575 transcriptional regulator K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D I607_15890 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D I607_18090 LysR family transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D I607_05820 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D I607_11290 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D I607_01145 glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D I607_19085 galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D I607_01080 repressor GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D I607_11605 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D I607_17930 galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D I607_01900 LacI family transcriptional repressor K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D I607_04135 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D I607_12165 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D I607_14295 pyruvate dehydrogenase complex transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D I607_15850 GntR family transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
C TetR/AcrR family
D I607_05235 transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D I607_00215 slmA; division inhibitor protein K05501 slmA; TetR/AcrR family transcriptional regulator
D I607_07285 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D I607_16330 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D I607_06320 transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D I607_02160 TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D I607_15955 DNA-binding transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D I607_10430 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D I607_05350 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D I607_17035 regulatory protein, AsnC/Lrp K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D I607_15740 transcriptional regulator K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
C MarR family
D I607_05520 transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D I607_04075 transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D I607_13910 Hg(II)-responsive transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D I607_04775 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D I607_13580 MerR family transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D I607_09900 merR family transcriptional regulator K19592 golS; MerR family transcriptional regulator, gold-responsive activator of gol and ges genes
C Fur family
D I607_10910 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D I607_17785 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
C CRP/FNR family
D I607_16335 cAMP-binding protein - catabolite protein activator and regulatory subunit of cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D I607_11955 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D I607_10150 fumarate/nitrate reduction transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D I607_13045 BadM/Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D I607_00395 YhdE protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D I607_14745 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D I607_09860 regulatory protein ArsR K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D I607_09875 regulatory protein ArsR K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
D I607_11310 arsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D I607_03425 transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D I607_11495 DNA-binding transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D I607_13655 BlaI family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D I607_16600 bifunctional biotin operon repressor/biotin synthetase BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D I607_18405 transcriptional activator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D I607_19452 transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D I607_18985 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D I607_09390 XRE family transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D I607_05035 polar flagellar protein FlaK K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D I607_10720 helix-turn-helix domain-containing protein K07726 K07726; putative transcriptional regulator
D I607_00340 DNA-binding protein K07726 K07726; putative transcriptional regulator
D I607_19035 putative transcriptional regulator, XRE family protein K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D I607_17225 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
B Other transcription factors
C BglG family
C Others
D I607_03175 BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D I607_19170 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D I607_09985 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D I607_20807 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D I607_19477 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D I607_16445 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D I607_05335 transcriptional regulatory protein tyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D I607_10550 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D I607_13605 PaaX-like protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D I607_05310 sigma-54 depedent transcriptional activator PspF K03974 pspF; psp operon transcriptional activator
D I607_05325 phage shock protein C K03973 pspC; phage shock protein C
D I607_16020 phage shock protein C K03973 pspC; phage shock protein C
D I607_19045 hypothetical protein K07733 alpA; prophage regulatory protein
D I607_10275 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D I607_14570 transcription regulator K07735 algH; putative transcriptional regulator
D I607_17330 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D I607_12585 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D I607_14445 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
#
Classification taken and modified from TRANSFAC 7.0