+E Ribosome biogenesis KO
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Ribosome Biogenesis - Alteromonas macleodii English Channel 673
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D AMEC673_12810 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D AMEC673_02010 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C AMEC673_12805 GTP-binding protein Era K03595 era; GTPase
C AMEC673_02430 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C AMEC673_14065 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C AMEC673_17450 putative DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C AMEC673_08210 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C AMEC673_12725 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C AMEC673_17700 transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D AMEC673_03390 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D AMEC673_00100 16S rRNA methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D AMEC673_01175 ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D AMEC673_17420 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D AMEC673_14660 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D AMEC673_19540 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D AMEC673_14555 16S rRNA m(4)C1402 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D AMEC673_14970 putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D AMEC673_00585 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D AMEC673_09590 rRNA (guanine-N1-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D AMEC673_17000 23S rRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D AMEC673_08750 rrmJ; 23S rRNA methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D AMEC673_13750 23S rRNA mA1618 methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D AMEC673_02950 putative ribosomal RNA small subunit methyltransferase D K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D AMEC673_08680 rRNA large subunit methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D AMEC673_07820 putative methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D AMEC673_09790 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D AMEC673_09890 rlmL; 23S rRNA m(2)G2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D AMEC673_06985 23S rRNA C2498 ribose 2'-O-ribose methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D AMEC673_13150 ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D AMEC673_03450 rumA; 23S rRNA m(5)U1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D AMEC673_02755 pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D AMEC673_05550 tRNA pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D AMEC673_06570 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D AMEC673_07960 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D AMEC673_12640 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D AMEC673_08565 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D AMEC673_08245 RNA pseudouridine synthase family protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C AMEC673_05360 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C AMEC673_16650 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C AMEC673_05980 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C AMEC673_09360 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C AMEC673_18840 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C AMEC673_05595 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C AMEC673_08540 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C AMEC673_12810 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C AMEC673_07955 RNase E K08300 rne; ribonuclease E [EC:3.1.26.12]
C AMEC673_01115 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C AMEC673_14675 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C AMEC673_17735 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C AMEC673_02805 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C AMEC673_04250 ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C AMEC673_12805 GTP-binding protein Era K03595 era; GTPase
C AMEC673_02005 GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C AMEC673_13115 GTP-binding protein Der K03977 engA; GTPase
C AMEC673_02430 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C AMEC673_13680 GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A
C AMEC673_17930 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C AMEC673_00135 putative double-stranded RNA-binding protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C AMEC673_00565 bifunctional (p)ppGpp synthetase II/guanosine-3,5-bis pyrophosphate 3-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C AMEC673_08220 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C AMEC673_08205 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C AMEC673_08685 iojap domain-containing protein K09710 ybeB; ribosome-associated protein
C AMEC673_06795 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C AMEC673_08745 RNA binding protein K07574 yhbY; RNA-binding protein
C AMEC673_01140 hypothetical protein K09889 yjgA; ribosome-associated protein
C AMEC673_09910 ribosome modulation factor K03812 rmf; ribosome modulation factor
C AMEC673_03620 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C AMEC673_06895 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C AMEC673_07975 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024