+F Repair protein KO #

  DNA Repair and Recombination Proteins - Aureimonas sp. AU20

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D M673_07085 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E M673_14840 hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E M673_09775 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E M673_03385 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E M673_03655 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E M673_03260 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D M673_16545 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D M673_13280 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D M673_00435 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D M673_01275 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D M673_03255 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D M673_07085 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D M673_02025 hypothetical protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E M673_13370 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E M673_17330 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E M673_14525 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E M673_23820 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E M673_16830 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E M673_14840 hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E M673_09775 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E M673_06460 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E M673_00465 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E M673_03385 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E M673_03655 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E M673_03260 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E M673_11970 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E M673_03245 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E M673_10645 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E M673_17020 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E M673_15255 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E M673_00200 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E M673_11430 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E M673_08615 hypothetical protein K03702 uvrB; excinuclease ABC subunit B E M673_12955 hypothetical protein K03703 uvrC; excinuclease ABC subunit C E M673_14340 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E M673_00200 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E M673_15255 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F M673_13690 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F M673_13685 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F M673_13530 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F M673_13360 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F M673_13865 hypothetical protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] F M673_10955 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E M673_01095 hypothetical protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E M673_06610 hypothetical protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E M673_06380 hypothetical protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E M673_09615 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E M673_09025 hypothetical protein K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E M673_11700 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E M673_00015 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E M673_13000 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E M673_02235 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E M673_11365 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E M673_02115 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E M673_15250 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E M673_21530 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E M673_04595 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E M673_15255 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E M673_14340 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E M673_11425 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E M673_23980 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E M673_10405 recombinase RecA K03553 recA; recombination protein RecA E M673_15065 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E M673_15070 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E M673_15050 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E M673_01390 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E M673_10405 recombinase RecA K03553 recA; recombination protein RecA E M673_13110 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E M673_00020 hypothetical protein K03629 recF; DNA replication and repair protein RecF E M673_10945 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E M673_10645 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E M673_17020 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E M673_13320 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E M673_04605 recombinase RecR K06187 recR; recombination protein RecR E M673_15260 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E M673_15065 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E M673_15070 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E M673_15050 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E M673_00120 hypothetical protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E M673_00115 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F M673_11415 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F M673_00400 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F M673_11660 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F M673_06565 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F M673_11840 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F M673_10645 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F M673_17020 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F M673_13320 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F M673_04605 recombinase RecR K06187 recR; recombination protein RecR F M673_15255 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F M673_12780 transcriptional regulator K04764 ihfA; integration host factor subunit alpha F M673_01140 transcriptional regulator K05788 ihfB; integration host factor subunit beta E Supressor F M673_14945 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F M673_11430 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F M673_08615 hypothetical protein K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D M673_12315 hypothetical protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D M673_10405 recombinase RecA K03553 recA; recombination protein RecA D M673_11195 umuDC operon protein-like protein K01356 lexA; repressor LexA [EC:3.4.21.88] D M673_15260 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D M673_02590 hypothetical protein K14160 imuA; protein ImuA D M673_02595 hypothetical protein K14161 imuB; protein ImuB D M673_02600 hypothetical protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D M673_11425 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M673_23980 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D M673_07400 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D M673_15165 helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D M673_16545 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D M673_13280 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D M673_00435 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D M673_20260 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D M673_12085 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D M673_20265 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024