+E Transcription factors KO #

  Transcription Factors - Bacillus amyloliquefaciens LFB112

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D U722_19415 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D U722_01095 AraC family transcriptional regulator K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon D U722_13070 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator D U722_20175 AraC family transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] C LysR family D U722_10170 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon D U722_04890 LysR family transcriptional regulator K19242 citR; LysR family transcriptional regulator, repressor for citA D U722_01925 LysR family transcriptional regulator K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD D U722_18610 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D U722_10140 LysR family transcriptional regulator K21959 ftsR; LysR family transcriptional regulator, cell division regulator D U722_16580 LysR family transcriptional regulator K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon C DeoR family D U722_06330 DeoR family transcriptional regulator K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor D U722_07515 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D U722_18040 stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D U722_19595 DeoR family transcriptional regulator K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor D U722_17990 DeoR family transcriptional regulator K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D U722_12785 transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D U722_02140 DeoR family transcriptional regulator K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor C LacI family D U722_14525 catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D U722_14695 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D U722_04020 LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D U722_17735 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D U722_09530 LacI family transcription regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D U722_17080 LacI family transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D U722_06440 LacI family transcriptional regulator K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor C GntR family D U722_16825 GntR family transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D U722_03990 GntR family transcriptional regulator K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D U722_10570 GntR family transcriptional regulator K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA D U722_03060 GntR family transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization D U722_15940 GntR family transcriptional regulator K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator D U722_17285 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D U722_08810 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D U722_16895 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D U722_02100 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D U722_02880 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D U722_20100 GntR family transcriptional regulator K18907 norG; GntR family transcriptional regulator, regulator for abcA and norABC D U722_14805 GntR family transcriptional regulator K07979 ytrA; GntR family transcriptional regulator C TetR/AcrR family D U722_13885 TetR family transcriptional regulator K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D U722_01540 TetR family transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor D U722_17290 TetR family transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor D U722_13170 TetR family transcriptional regulator K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon D U722_14395 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D U722_02275 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D U722_17845 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D U722_13820 LuxR family transcriptional regulator K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein D U722_03235 transcriptional regulator K16247 gutR; LuxR family transcriptional regulator, glucitol operon activator C MarR family D U722_18045 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D U722_05185 transcriptional regulator K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr D U722_07030 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D U722_07180 transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D U722_02645 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D U722_06920 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D U722_04675 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D U722_09160 transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D U722_04940 MerR family transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator D U722_02870 transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator D U722_07015 MerR family transcriptional regulator K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator D U722_03755 MerR family transcriptional regulator K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon C Fur family D U722_11795 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D U722_12715 Fur family transcriptional regulator K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D U722_04400 Fur family transcriptional regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family C CRP/FNR family D U722_06955 XRE family transcriptional regulator K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator C Rrf2 family D U722_04860 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D U722_13360 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D U722_19090 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D U722_10290 ArsR family transcriptional regulator K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family D U722_12485 transcriptional regulator K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation D U722_16990 transcriptional regulator K19417 slrR; XRE family transcriptional regulator, biofilm formation regulator C PadR family D U722_04210 PadR family transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator D U722_18590 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator D U722_18795 DNA-binding protein K10947 K10947; PadR family transcriptional regulator C Other families D U722_12440 peptidase U32 K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D U722_04175 RpiR family transcriptional regulator K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator D U722_11250 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D U722_16625 XRE family transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator D U722_16620 XRE family transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator D U722_15190 hypothetical protein K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator D U722_16680 MarR family transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator D U722_16705 MarR family transcriptional regulator K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator D U722_14470 transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D U722_00305 LacI family transcriptional regulator K09685 purR; HTH-type transcriptional regulator, purine operon repressor D U722_04160 acetoin dehydrogenase K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D U722_16310 hypothetical protein K26990 rsoA; sigma-O factor regulatory protein RsoA D U722_13955 hypothetical protein K02647 cdaR; carbohydrate diacid regulator D U722_19815 ATPase AAA K06714 rocR; arginine utilization regulatory protein D U722_03190 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D U722_08480 transcriptional regulator K03706 codY; transcriptional pleiotropic repressor D U722_04615 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D U722_02520 Antitoxin EndoAI K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI C Other families B Other transcription factors C BglG family D U722_18820 levansucrase K26932 sacT; sacPA operon transcriptional antiterminator D U722_07280 PtsGHI operon antiterminator K03480 glcT; transcriptional antiterminator D U722_02235 PTS sugar transporter subunit IIA K03483 mtlR; mannitol operon transcriptional activator D U722_13135 PTS sugar transporter subunit IIA K02538 manR; mannose operon transcriptional activator D U722_19060 PTS fructose transporter subunit IIA K03491 licR; probable licABCH operon transcriptional regulator C Others D U722_16500 transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D U722_15895 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D U722_01785 hypothetical protein K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator D U722_00255 transition state regulator Abh K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D U722_07570 transition state regulator Abh K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D U722_00350 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D U722_20225 plasmid partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D U722_20235 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D U722_02670 hypothetical protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D U722_04805 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator D U722_12305 arginine repressor ArgR K03402 argR; transcriptional regulator of arginine metabolism D U722_09185 xylose repressor K02565 nagC; N-acetylglucosamine repressor D U722_12910 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor D U722_05945 thiaminase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D U722_05950 transcriptional regulator K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10] D U722_00550 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response D U722_17305 membrane protein K03973 pspC; phage shock protein C D U722_16815 central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator D U722_19480 RNA polymerase sigma70 K05346 deoR; deoxyribonucleoside regulator D U722_05760 transcriptional regulator K05519 med; transcriptional activator of comK gene D U722_11420 transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D U722_08125 uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D U722_18585 transcriptional regulator K06314 rsfA; prespore-specific regulator D U722_07945 hypothetical protein K06314 rsfA; prespore-specific regulator D U722_07300 transcriptional regulator K06315 splA; transcriptional regulator of the spore photoproduct lyase operon D U722_02885 transcriptional regulator K07734 paiB; transcriptional regulator D U722_14110 nrdR; NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR D U722_19435 hutP; antitermination protein K09683 hutP; hut operon positive regulatory protein D U722_05385 competence protein K02250 comK; competence protein ComK D U722_07965 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ D U722_16330 membrane protein K26991 yvrL; membrane-bound negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0