+E Transcription factors KO
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Transcription Factors - Bifidobacterium breve DSM 20213 = JCM 1192
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BBBR_0789 transcriptional regulator K13653 K13653; AraC family transcriptional regulator
C LysR family
C DeoR family
C LacI family
D BBBR_0009 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBBR_0157 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBBR_1377 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBBR_1470 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBBR_1550 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBBR_1664 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBBR_1887 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BBBR_1609 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D BBBR_0096 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D BBBR_0087 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D BBBR_0090 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
C GntR family
D BBBR_1894 hypothetical protein K03710 K03710; GntR family transcriptional regulator
C TetR/AcrR family
C Lrp/AsnC family
C LuxR family
C MarR family
D BBBR_1473 transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
C MerR family
D BBBR_0111 putative transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D BBBR_0339 transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
C Fur family
D BBBR_0496 putative metal uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BBBR_0502 putative ferric uptake regulator protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
C CRP/FNR family
D BBBR_0409 putative transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
C ArsR family
C XRE family
C PadR family
C Other families
D BBBR_1724 conserved hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BBBR_0841 putative transcriptional regulator K07727 K07727; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
D BBBR_1592 transcription antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator
C Others
D BBBR_0685 transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D BBBR_0689 putative transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D BBBR_1147 conserved hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D BBBR_0227 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D BBBR_1923 putative chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BBBR_0698 putative transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D BBBR_0635 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D BBBR_1648 putative transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D BBBR_0809 putative transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D BBBR_0954 heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D BBBR_0912 putative transcriptional activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D BBBR_1330 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D BBBR_1327 conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0