+E Transcription factors KO #

  Transcription Factors - Bifidobacterium breve DSM 20213 = JCM 1192

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D BBBR_0789 transcriptional regulator K13653 K13653; AraC family transcriptional regulator C LysR family C DeoR family C LacI family D BBBR_0009 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BBBR_0157 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BBBR_1377 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BBBR_1470 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BBBR_1550 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BBBR_1664 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BBBR_1887 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BBBR_1609 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D BBBR_0096 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D BBBR_0087 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D BBBR_0090 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor C GntR family D BBBR_1894 hypothetical protein K03710 K03710; GntR family transcriptional regulator C TetR/AcrR family C Lrp/AsnC family C LuxR family C MarR family D BBBR_1473 transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin C MerR family D BBBR_0111 putative transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D BBBR_0339 transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator C Fur family D BBBR_0496 putative metal uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BBBR_0502 putative ferric uptake regulator protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family C CRP/FNR family D BBBR_0409 putative transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein C Rrf2 family C ArsR family C XRE family C PadR family C Other families D BBBR_1724 conserved hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BBBR_0841 putative transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family D BBBR_1592 transcription antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator C Others D BBBR_0685 transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D BBBR_0689 putative transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D BBBR_1147 conserved hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator D BBBR_0227 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D BBBR_1923 putative chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BBBR_0698 putative transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D BBBR_0635 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D BBBR_1648 putative transcriptional regulator K02565 nagC; N-acetylglucosamine repressor D BBBR_0809 putative transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene D BBBR_0954 heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor D BBBR_0912 putative transcriptional activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D BBBR_1330 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR D BBBR_1327 conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0