+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bartonella kosoy

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D D1093_05325 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E D1093_04970 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E D1093_01790 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D D1093_02345 mutT; 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D1093_00115 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D D1093_05325 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E D1093_05340 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E D1093_05425 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E D1093_04970 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E D1093_08180 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E D1093_02570 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E D1093_01790 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E D1093_00700 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E D1093_03580 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E D1093_03810 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E D1093_07815 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E D1093_01385 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E D1093_03915 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E D1093_05275 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B E D1093_05695 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C E D1093_07790 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E D1093_01385 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E D1093_07815 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F D1093_05975 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F D1093_05980 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F D1093_03730 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F D1093_05430 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F D1093_06560 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E D1093_01815 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E D1093_02670 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E D1093_08185 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E D1093_04855 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E D1093_04035 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E D1093_01910 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E D1093_05650 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E D1093_01115 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E D1093_06705 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E D1093_01380 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E D1093_02495 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E D1093_07815 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E D1093_07790 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E D1093_03060 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E D1093_03295 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E D1093_03920 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E D1093_04280 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E D1093_06305 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E D1093_02890 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E D1093_03070 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E D1093_03750 recA; recombinase RecA K03553 recA; recombination protein RecA E D1093_00310 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E D1093_00305 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E D1093_00315 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E D1093_03265 phage protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E D1093_04245 phage protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E D1093_06275 putative bacteriophage-related protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E D1093_00605 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E D1093_03750 recA; recombinase RecA K03553 recA; recombination protein RecA E D1093_05550 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E D1093_01915 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF E D1093_04030 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E D1093_03810 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E D1093_05470 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E D1093_02485 recR; recombination protein RecR K06187 recR; recombination protein RecR E D1093_07820 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E D1093_00310 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E D1093_00305 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E D1093_00315 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E D1093_03265 phage protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E D1093_04245 phage protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E D1093_06275 putative bacteriophage-related protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E D1093_01480 addA; double-strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E D1093_01475 addB; double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F D1093_03925 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F D1093_01540 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F D1093_06865 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F D1093_05880 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F D1093_03810 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F D1093_05470 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F D1093_02485 recR; recombination protein RecR K06187 recR; recombination protein RecR F D1093_07815 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F D1093_07005 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F D1093_01420 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F D1093_03915 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F D1093_05275 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B F D1093_00725 H-NS histone family protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D D1093_03750 recA; recombinase RecA K03553 recA; recombination protein RecA D D1093_03115 putative phage repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D D1093_04430 putative phage repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D D1093_06730 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D D1093_07820 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D D1093_03060 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D D1093_03295 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D D1093_03920 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D D1093_04280 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D D1093_06305 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D D1093_02345 mutT; 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D D1093_00115 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D D1093_02305 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D D1093_02310 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024