+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Bombyx mandarina (wild silkworm)

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors E 114248602 mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] E 114249125 mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] E 114241033 cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E 114249896 LOW QUALITY PROTEIN: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57] E 114242626 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296] D Cap binding complex E 114251102 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1 E 114252728 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2 C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) E 114251680 cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 E 114242754 cleavage and polyadenylation specificity factor subunit CG7185 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 D Pre-mRNA cleavage factor IIm (CFIIm) E 114251203 protein CLP1 homolog K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] E 114248012 LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 D Cleavage and polyadenylation specificity factor (CPSF) complex E 114250101 cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 E 114243866 probable cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E 114249040 cleavage and polyadenylation specificity factor 73 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E 114250995 cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 E 114250281 pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 E 114251435 pre-mRNA 3' end processing protein WDR33-like isoform X1 K15542 PFS2; polyadenylation factor subunit 2 E 114250955 WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2 E 114251707 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 114240522 serine/threonine-protein phosphatase alpha-2 isoform isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] E 114248522 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] D Cleavage stimulation factor (CSTF) complex E 114246147 cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1 E 114239929 cleavage stimulation factor subunit 2 tau variant isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2 E 114249795 protein suppressor of forked K14408 CSTF3; cleavage stimulation factor subunit 3 E 114244394 symplekin K06100 SYMPK; symplekin D U7-dependent histone pre-mRNA processing factors E 114248970 small nuclear ribonucleoprotein-associated protein B K11086 SNRPB; small nuclear ribonucleoprotein B and B' E 114246749 small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3 E 114243309 probable small nuclear ribonucleoprotein E isoform X1 K11097 SNRPE; small nuclear ribonucleoprotein E E 114241364 small nuclear ribonucleoprotein F-like K11098 SNRPF; small nuclear ribonucleoprotein F E 114241401 small nuclear ribonucleoprotein F-like K11098 SNRPF; small nuclear ribonucleoprotein F E 114253522 probable small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G E 114248183 uncharacterized protein LOC114248183 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10 E 114242586 U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11 E 114243866 probable cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 E 114249040 cleavage and polyadenylation specificity factor 73 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] E 114239929 cleavage stimulation factor subunit 2 tau variant isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2 E 114244394 symplekin K06100 SYMPK; symplekin E 114249908 histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein D DRB sensitivity inducing factor (DSIF) complex E 114241463 transcription elongation factor SPT4-A K15171 SUPT4H1; transcription elongation factor SPT4 E 114247062 transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5 D N6-methyltransferase complex E 114245052 N6-adenosine-methyltransferase catalytic subunit isoform X1 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] E 114242397 N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit E 114239365 methyltransferase-like protein 4 isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72] E 114249898 U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] E 114244143 pre-mRNA-splicing regulator female-lethal(2)D K22824 WTAP; pre-mRNA-splicing regulator WTAP E 114247360 protein virilizer isoform X1 K22910 VIRMA; protein virilizer E 114252792 RNA-binding protein spenito K13190 RBM15; RNA-binding protein 15 E 114244581 zinc finger CCCH domain-containing protein 13-like isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 E 114252497 zinc finger CCCH domain-containing protein 13 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 E 114240160 E3 ubiquitin-protein ligase Hakai K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] D Poly(A) addition factors E 114241013 poly(A) polymerase type 3 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] E 114240329 poly(A) RNA polymerase gld-2 homolog A-like isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19] E 114250127 speckle targeted PIP5K1A-regulated poly(A) polymerase-like isoform X1 K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52] D Negative regulators of mRNA 3' end processing E 114243459 BRCA1-associated RING domain protein 1-like K10683 BARD1; BRCA1-associated RING domain protein 1 E 114246529 RNA-binding protein 26 isoform X1 K13192 RBM26; RNA-binding protein 26 E 114243264 TAR DNA-binding protein 43-like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43 C Other processing factors D 114246170 DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17 D 114242226 methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] D 114239272 zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14 D 114248016 serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule B mRNA surveillance and transport factors C Transport factors D EJC complex E 114241900 RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A E 114250339 protein mago nashi homolog K12877 MAGOH; protein mago nashi E 114249920 THO complex subunit 4 K12881 THOC4; THO complex subunit 4 E 114243661 ATP-dependent RNA helicase WM6 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] E 114243954 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E 114243649 coiled-coil domain-containing protein 174 isoform X1 K25178 CCDC174; coiled-coil domain-containing protein 174 E 114242497 protein CASC3 K14323 CASC3; protein CASC3 E 114248283 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18 E 114245345 pinin K13114 PNN; pinin E 114252680 RNA-binding protein with serine-rich domain 1-A-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1 E 114251344 serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1 D TREX complex E 114241392 THO complex subunit 1 K12878 THOC1; THO complex subunit 1 E 114245339 THO complex subunit 2 K12879 THOC2; THO complex subunit 2 E 114241506 THO complex subunit 3 K12880 THOC3; THO complex subunit 3 E 114249920 THO complex subunit 4 K12881 THOC4; THO complex subunit 4 E 114245401 THO complex subunit 5 homolog isoform X1 K13174 THOC5; THO complex subunit 5 E 114247382 THO complex subunit 6-like K13175 THOC6; THO complex subunit 6 E 114247415 THO complex subunit 6-like K13175 THOC6; THO complex subunit 6 E 114250996 THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7 D TREX-2 complex E 114240828 PCI domain-containing protein 2 homolog K23801 PCID2; nuclear mRNA export protein PCID2/THP1 E 114246590 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1 E 114247821 transcription and mRNA export factor ENY2-like K11368 ENY2; enhancer of yellow 2 transcription factor E 114243489 caltractin-like K10840 CETN2; centrin-2 D Nuclear pore complex E 114242697 nucleoprotein TPR-like isoform X1 K09291 TPR; nucleoprotein TPR E 114249423 mRNA export factor K14298 RAE1; mRNA export factor E 114243886 protein SEC13 homolog K14004 SEC13; protein transport protein SEC13 E 114244665 nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85 E 114251897 nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43 E 114251067 nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50 E 114247174 probable nucleoporin Nup54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54 E 114243775 nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62 E 114240513 nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88 E 114246032 nuclear pore complex protein Nup93-like K14309 NUP93; nuclear pore complex protein Nup93 E 114249038 nuclear pore complex protein Nup98-Nup96-like isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96 E 114246948 nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107 E 114246254 nuclear pore complex protein Nup133 isoform X1 K14300 NUP133; nuclear pore complex protein Nup133 E 114244865 nucleoporin NUP188 homolog K14311 NUP188; nuclear pore complex protein Nup188 E 114245193 nuclear pore complex protein Nup153-like isoform X1 K14296 NUP153; nuclear pore complex protein Nup153 E 114252026 nuclear pore complex protein Nup154 K14312 NUP155; nuclear pore complex protein Nup155 E 114251659 nuclear pore complex protein Nup160 homolog K14303 NUP160; nuclear pore complex protein Nup160 E 114239427 nucleoporin Nup35 K14313 NUP35; nuclear pore complex protein Nup53 E 114242571 LOW QUALITY PROTEIN: nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205 E 114251176 uncharacterized protein LOC114251176 K14314 NUP210; nuclear pore complex protein Nup210 E 114240604 nuclear pore complex protein Nup214-like isoform X1 K14317 NUP214; nuclear pore complex protein Nup214 E 114242741 probable nucleoporin Nup58 K14307 NUPL1; nucleoporin p58/p45 E 114244132 nucleoporin-like protein amo1 K14321 NUPL2; nucleoporin-like protein 2 E 114252004 nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1 E 114250419 nucleoporin SEH1 K14299 SEH1; nucleoporin SEH1 E 114241644 E3 SUMO-protein ligase RanBP2-like K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-] E 114250985 aladin-like isoform X1 K14320 AAAS; aladin E 114243953 nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1 E 114251461 nuclear RNA export factor 1-like isoform X1 K14284 NXF; nuclear RNA export factor E 114250440 nuclear RNA export factor 1-like K14284 NXF; nuclear RNA export factor E 114246344 nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor E 114245808 NTF2-related export protein K14285 NXT1_2; NTF2-related export protein 1/2 D Ran-mediated transport factors E 114239702 acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1 K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D E 114247298 ELAV-like protein 2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 114246834 ELAV-like protein 2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4 E 114251848 FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2 E 114239348 transitional endoplasmic reticulum ATPase TER94 K13525 VCP; transitional endoplasmic reticulum ATPase E 114243012 protein-lysine methyltransferase METTL21D-like K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] E 114244721 exportin-1 K14290 XPO1; exportin-1 E 114251249 exportin-7-B isoform X1 K18460 XPO7; exportin-7 E 114244368 ran GTPase-activating protein 1-like K14319 RANGAP1; Ran GTPase-activating protein 1 D eIF4F and regulatory proteins E 114240304 eukaryotic translation initiation factor 4E-like K03259 EIF4E; translation initiation factor 4E E 114253006 eukaryotic translation initiation factor 4E1-like K03259 EIF4E; translation initiation factor 4E E 114239950 eukaryotic translation initiation factor 4E-4 K03259 EIF4E; translation initiation factor 4E E 114248329 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A E 114245154 eukaryotic translation initiation factor 4 gamma 3-like isoform X1 K03260 EIF4G; translation initiation factor 4G E 114240875 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G E 114239910 eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B E 114252868 eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H E 114252060 eukaryotic translation initiation factor 4E-binding protein 3-like K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2 E 114252861 eukaryotic translation initiation factor 4E transporter-like isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter E 114249210 protein angel homolog 2-like isoform X1 K18729 ANGEL; protein angel E 114253470 fragile X mental retardation syndrome-related protein 1 homolog A isoform X1 K15516 FMR; fragile X mental retardation protein E 114241753 cytoplasmic FMR1-interacting protein K05749 CYFIP; cytoplasmic FMR1 interacting protein E 114241749 gem-associated protein 5-like isoform X1 K13133 GEMIN5; gem associated protein 5 E 114250474 cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 114239971 cytoplasmic polyadenylation element-binding protein 1-B K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 114247954 ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E 114249965 polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein E 114253459 polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 E 114247791 helicase SKI2W-like K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] E 114246556 deformed epidermal autoregulatory factor 1 isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1 E 114242759 malignant T-cell-amplified sequence 1 homolog K07575 MCTS; malignant T-cell-amplified sequence E 114245385 density-regulated protein homolog K24272 DENR; density-regulated protein D APOBEC1-ACF complex D Other transport factors E 114247260 partner of Y14 and mago isoform X1 K14294 WIBG; partner of Y14 and mago E 114239873 heterogeneous nuclear ribonucleoprotein 87F-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 114239941 heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 114244191 RNA-binding protein Musashi homolog Rbp6-like isoform X1 K14411 MSI; RNA-binding protein Musashi E 114243231 RNA-binding protein Musashi homolog Rbp6 isoform X1 K14411 MSI; RNA-binding protein Musashi E 114240271 heterogeneous nuclear ribonucleoprotein 27C-like isoform X1 K14411 MSI; RNA-binding protein Musashi E 114250232 HBS1-like protein K14416 HBS1; elongation factor 1 alpha-like protein E 114239399 polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2 E 114248515 DEAD-box helicase Dbp80 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] E 114244582 pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1 E 114243656 SAP domain-containing ribonucleoprotein-like K18732 SARNP; SAP domain-containing ribonucleoprotein E 114241037 regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation E 114240902 la-related protein 6 K18733 LARP6; la-related protein 6 E 114248687 transcriptional activator protein Pur-beta isoform X1 K21772 PURA; transcriptional activator protein Pur-alpha E 114251389 polymerase delta-interacting protein 3-like K22414 POLDIP3; polymerase delta-interacting protein 3 E 114241021 zinc finger CCCH domain-containing protein 11A-like K22415 ZC3H11; zinc finger CCCH domain-containing protein 11 E 114243562 leukocyte receptor cluster member 8 K23802 LENG8; SAC3 family protein LENG8/THP3 C Surveillance factors D Surveillance complex E 114247117 eukaryotic peptide chain release factor subunit 1 isoform X1 K03265 ETF1; peptide chain release factor subunit 1 E 114247078 eukaryotic peptide chain release factor subunit 1-like K03265 ETF1; peptide chain release factor subunit 1 E 114240584 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3 E 114245999 regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2 E 114250899 regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3 D Protein phosphatase 2A E 114252409 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] E 114253037 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A E 114253139 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A E 114241462 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B E 114250337 uncharacterized protein LOC114250337 isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' E 114242532 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma-like K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' E 114246418 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' E 114240390 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' D Other surveillance factors E 114251432 serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] E 114241945 serine/threonine-protein kinase SMG1-like isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] E 114242450 protein SMG5 K11125 SMG5; protein SMG5 E 114252089 telomerase-binding protein EST1A-like K11124 SMG6; protein SMG6 [EC:3.1.-.-] E 114251220 telomerase-binding protein EST1A-like K11124 SMG6; protein SMG6 [EC:3.1.-.-] E 114242580 uncharacterized protein LOC114242580 K14409 SMG7; protein SMG7 E 114239979 protein SMG8 isoform X1 K18734 SMG8; protein SMG8 E 114239460 protein SMG9 K18735 SMG9; protein SMG9 E 114248253 probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6] E 114248898 GTP-binding protein 1 K24887 GTPBP1; GTP-binding protein 1 C Factors involved in mRNA localization D Cargo complex E 114253270 protein penguin K14844 PUF6; pumilio homology domain family member 6 E 114245670 unconventional myosin-Va K10357 MYO5; myosin V E 114239281 protein bicaudal D isoform X1 K18739 BICD; protein bicaudal D E 114240412 egalitarian protein homolog K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 E 114251064 piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 D Factors that have mRNA localization signals E 114253301 actin-5C K05692 ACTB_G1; actin beta/gamma 1 E 114253302 actin-5C K05692 ACTB_G1; actin beta/gamma 1 E 114243276 myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein E 114248857 T-box transcription factor TBX6-like K10180 TBX6; T-box protein 6 E 114247208 uncharacterized protein LOC114247208 K18741 NANOS1; protein nanos 1 E 114252703 uncharacterized protein LOC114252703 K18741 NANOS1; protein nanos 1 E 114249888 uncharacterized protein LOC114249888 K18741 NANOS1; protein nanos 1 E 114242977 transcription factor HES-4-B-like K09090 HESN; hairy and enhancer of split, invertebrate E 114244147 enhancer of split mbeta protein-like K09090 HESN; hairy and enhancer of split, invertebrate E 114242359 enhancer of split mbeta protein-like K09090 HESN; hairy and enhancer of split, invertebrate D Trans-acting binding proteins E 114245085 far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein E 114241667 elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha E 114242876 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha E 114250141 elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma E 114252983 uncharacterized protein LOC114252983 K16220 HAX1; HCLS1-associated protein X-1 E 114245962 arf-GAP domain and FG repeat-containing protein 1-like isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 E 114244863 double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen E 114247573 polypyrimidine tract-binding protein 2 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1 E 114246686 RNA-binding protein squid isoform X1 K03102 SQD; squid E 114250474 cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 114239971 cytoplasmic polyadenylation element-binding protein 1-B K02602 CPEB; cytoplasmic polyadenylation element-binding protein D Other mRNA localization factors E 114253470 fragile X mental retardation syndrome-related protein 1 homolog A isoform X1 K15516 FMR; fragile X mental retardation protein E 114241753 cytoplasmic FMR1-interacting protein K05749 CYFIP; cytoplasmic FMR1 interacting protein E 114239696 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4 E 114249706 caprin homolog isoform X1 K18743 CAPRIN1; caprin-1 E 114243149 CUGBP Elav-like family member 1 isoform X1 K02177 BRU; bruno E 114243380 maternal protein exuperantia isoform X1 K18745 EXU; maternal protein exuperantia E 114245180 Y-box factor homolog K09276 YBX1; Y-box-binding protein 1 C mRNA cycle factors D Common to processing body (P body) and stress granule E 114250593 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] E 114250920 protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C E 114241313 protein argonaute-2-like isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C E 114240304 eukaryotic translation initiation factor 4E-like K03259 EIF4E; translation initiation factor 4E E 114253006 eukaryotic translation initiation factor 4E1-like K03259 EIF4E; translation initiation factor 4E E 114239950 eukaryotic translation initiation factor 4E-4 K03259 EIF4E; translation initiation factor 4E E 114247954 ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] E 114244740 putative ATP-dependent RNA helicase me31b K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E 114240324 RNA-binding protein MEX3D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] E 114242256 protein LSM14 homolog B-A-like K18749 LSM14; protein LSM14 E 114245180 Y-box factor homolog K09276 YBX1; Y-box-binding protein 1 E 114250132 LIM domain-containing protein jub K16682 AJUBA; LIM domain-containing protein E 114250876 RNA helicase Mov10l1-like K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] E 114246218 transportin-1 K18752 TNPO1; transportin-1 E 114251432 serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] E 114241945 serine/threonine-protein kinase SMG1-like isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] E 114242450 protein SMG5 K11125 SMG5; protein SMG5 E 114252089 telomerase-binding protein EST1A-like K11124 SMG6; protein SMG6 [EC:3.1.-.-] E 114251220 telomerase-binding protein EST1A-like K11124 SMG6; protein SMG6 [EC:3.1.-.-] E 114242580 uncharacterized protein LOC114242580 K14409 SMG7; protein SMG7 E 114251706 protein TIS11 K15308 TTP; tristetraprolin E 114244296 protein lin-28 homolog K18754 LIN28; protein lin-28 E 114248681 huntingtin isoform X1 K04533 HD; huntingtin E 114252262 protein bicaudal C homolog 1-A K18756 BICC1; protein bicaudal C E 114239873 heterogeneous nuclear ribonucleoprotein 87F-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 114239941 heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 E 114251882 cAMP-dependent protein kinase catalytic subunit alpha-like K04345 PKA; protein kinase A [EC:2.7.11.11] E 114251883 cAMP-dependent protein kinase catalytic subunit 1-like K04345 PKA; protein kinase A [EC:2.7.11.11] E 114251884 cAMP-dependent protein kinase catalytic subunit 1-like K04345 PKA; protein kinase A [EC:2.7.11.11] E 114245956 cAMP-dependent protein kinase catalytic subunit 1 isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11] E 114246677 LOW QUALITY PROTEIN: la-related protein 1 K18757 LARP1; la-related protein 1 E 114241980 ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L D P-body specific factors E 114244953 mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] E 114241220 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E 114249790 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E 114244146 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E 114250472 U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E 114240607 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E 114240923 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E 114251582 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E 114246497 U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 E 114248232 kinesin light chain isoform X1 K10407 KLC; kinesin light chain E 114245670 unconventional myosin-Va K10357 MYO5; myosin V E 114239655 tubulin alpha chain K07374 TUBA; tubulin alpha E 114248950 tubulin alpha-1A chain K07374 TUBA; tubulin alpha E 114246577 tubulin alpha-1 chain-like K07374 TUBA; tubulin alpha E 114248177 tubulin alpha chain-like K07374 TUBA; tubulin alpha E 114250502 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha E 114250474 cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 114239971 cytoplasmic polyadenylation element-binding protein 1-B K02602 CPEB; cytoplasmic polyadenylation element-binding protein E 114241749 gem-associated protein 5-like isoform X1 K13133 GEMIN5; gem associated protein 5 E 114253292 protein Gawky isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein E 114252822 CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E 114239384 regulator of gene activity isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E 114247242 CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3 E 114239578 uncharacterized protein LOC114239578 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] E 114253131 CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 114248548 CCR4-NOT transcription complex subunit 7-like K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 114248550 CCR4-NOT transcription complex subunit 7-like K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 114249557 DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] E 114250036 PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 E 114243182 protein Tob1 K14443 TOB; protein Tob/BTG E 114252861 eukaryotic translation initiation factor 4E transporter-like isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter E 114246565 uncharacterized protein LOC114246565 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 E 114245999 regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2 E 114250899 regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3 E 114239496 protein wech K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] E 114244954 RING finger protein nhl-1 isoform X1 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] E 114243925 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 D Stress granule specific factors E 114250477 nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR E 114243874 nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR E 114249965 polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein E 114244863 double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen E 114253470 fragile X mental retardation syndrome-related protein 1 homolog A isoform X1 K15516 FMR; fragile X mental retardation protein E 114246689 ras GTPase-activating protein-binding protein 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 E 114241675 eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A E 114248817 eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B E 114248329 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A E 114243954 eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] E 114239910 eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B E 114245154 eukaryotic translation initiation factor 4 gamma 3-like isoform X1 K03260 EIF4G; translation initiation factor 4G E 114240875 eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G E 114244396 ribosomal protein S6 kinase 2 beta K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] E 114250802 guanine nucleotide-binding protein subunit beta-like protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein E 114251461 nuclear RNA export factor 1-like isoform X1 K14284 NXF; nuclear RNA export factor E 114250440 nuclear RNA export factor 1-like K14284 NXF; nuclear RNA export factor E 114246344 nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor E 114247448 histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] E 114252520 tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3 B mRNA degradation factors C 5'-3' decay D Decapping complex E 114244953 mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] E 114244740 putative ATP-dependent RNA helicase me31b K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] E 114246565 uncharacterized protein LOC114246565 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 D Lsm complex E 114241220 U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 E 114249790 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 E 114244146 U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 E 114250472 U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 E 114240607 U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 E 114240923 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 E 114251582 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 E 114246497 U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 D 5' exonucleases E 114250593 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] E 114248413 5'-3' exoribonuclease 2 homolog K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] D Other 5'-3' decay factors E 114248421 m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] C 3'-5' decay D Core exosome factors E 114241460 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4 E 114242943 exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4 E 114247264 exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40 E 114243381 exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41 E 114248424 exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46 E 114245055 exosome complex component MTR3-like isoform X1 K12587 MTR3; exosome complex component MTR3 E 114244918 exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42 E 114245303 exosome complex component RRP43-like K12586 RRP43; exosome complex component RRP43 D Exosome cofactors E 114244530 exosome component 10 isoform X1 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] E 114244334 nuclear nucleic acid-binding protein C1D-like K12592 C1D; exosome complex protein LRP1 E 114244477 nuclear nucleic acid-binding protein C1D-like K12592 C1D; exosome complex protein LRP1 E 114252838 M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type D TRAMP complex E 114249462 non-canonical poly(A) RNA polymerase protein Trf4-1-like isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] E 114247439 uncharacterized protein LOC114247439 K12597 AIR1_2; protein AIR1/2 D Ski complex E 114247791 helicase SKI2W-like K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] E 114248711 tetratricopeptide repeat protein 37 isoform X1 K12600 SKI3; superkiller protein 3 E 114243778 WD repeat-containing protein 61-like K12602 WDR61; WD repeat-containing protein 61 E 114242457 WD repeat-containing protein 61-like K12602 WDR61; WD repeat-containing protein 61 D Ccr4-NOT complex E 114253131 CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] E 114252822 CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1 E 114239384 regulator of gene activity isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2 E 114247242 CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3 E 114239578 uncharacterized protein LOC114239578 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] E 114248548 CCR4-NOT transcription complex subunit 7-like K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 114248550 CCR4-NOT transcription complex subunit 7-like K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 E 114250451 CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9 E 114240478 CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10 D Pan complex E 114250036 PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 D Other 3'-5' decay factors E 114241360 poly(A)-specific ribonuclease PARN-like K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] E 114249231 pre-piRNA 3'-exonuclease trimmer isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] E 114252012 ATP-dependent DNA/RNA helicase DHX36-like isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] E 114243182 protein Tob1 K14443 TOB; protein Tob/BTG E 114248421 m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] E 114250973 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-] E 114250064 protein Smaug K27396 SMG; protein Smaug E 114244607 focadhesin K27498 FOCAD; focadhesin C Other degradation factors D RNases E 114244135 endoribonuclease ZC3H12A isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] E 114243344 uncharacterized protein LOC114243344 isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E 114249096 ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] E 114245945 oligoribonuclease, mitochondrial isoform X1 K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases D Other RNA degradosome components E 114252693 enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E 114245358 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E 114251489 polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E 114247670 ATP-dependent 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E 114251234 heat shock 70 kDa protein cognate 5 K04043 dnaK; molecular chaperone DnaK E 114251148 heat shock protein 60A-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Others D Bacterial Small RNA Regulators B Archeal mRNA degradation factors C Exosome components D Core exosome E 114242943 exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4 E 114241460 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4 D Cofactors E 114243381 exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41 E 114244918 exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42 D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024