+E Transcription factors KO #

  Transcription Factors - Bacillus velezensis JS25R

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D NG74_00199 btr_1; HTH-type transcriptional activator Btr K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon D NG74_02514 tetD; Transposon Tn10 TetD protein K13653 K13653; AraC family transcriptional regulator D NG74_03973 adaA; Bifunctional transcriptional activator/DNA repair enzyme AdaA K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] C LysR family D NG74_01939 gltC_2; HTH-type transcriptional regulator GltC K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon D NG74_03151 gltC_4; HTH-type transcriptional regulator GltC K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon D NG74_00976 cysL_1; HTH-type transcriptional regulator CysL K19242 citR; LysR family transcriptional regulator, repressor for citA D NG74_00357 gltC_1; HTH-type transcriptional regulator GltC K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD D NG74_03658 cysL_2; HTH-type transcriptional regulator CysL K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D NG74_01934 yofA; HTH-type transcriptional regulator YofA K21959 ftsR; LysR family transcriptional regulator, cell division regulator D NG74_03251 cmpR_2; HTH-type transcriptional activator CmpR K21960 ytlI; LysR family transcriptional regulator, regulator of the ytmI operon C DeoR family D NG74_01240 lacR_1; Lactose phosphotransferase system repressor K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor D NG74_01470 lacR_2; Lactose phosphotransferase system repressor K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D NG74_03537 spoIIID; Stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D NG74_03853 srlR; Glucitol operon repressor K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor D NG74_03527 glcR; HTH-type transcriptional repressor GlcR K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D NG74_02459 ccpN; Transcriptional repressor CcpN K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D NG74_00398 ycnK; HTH-type transcriptional repressor YcnK K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor C LacI family D NG74_00798 ccpA_1; Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NG74_02829 ccpA_2; Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NG74_02861 lacR_3; HTH-type transcriptional regulator LacR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NG74_03484 ccpA_3; Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D NG74_01878 kdgR; HTH-type transcriptional regulator KdgR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D NG74_03344 degA_2; HTH-type transcriptional regulator DegA K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D NG74_01263 exuR; putative HTH-type transcriptional repressor ExuR K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor C GntR family D NG74_03292 araR; Arabinose metabolism transcriptional repressor K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D NG74_00792 treR; Trehalose operon transcriptional repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D NG74_02017 yydK; putative HTH-type transcriptional regulator YydK K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA D NG74_00595 gmuR; HTH-type transcriptional regulator GmuR K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization D NG74_03110 yurK; putative HTH-type transcriptional regulator YurK K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator D NG74_03389 yvoA_2; HTH-type transcriptional repressor YvoA K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D NG74_01727 yvoA_1; HTH-type transcriptional repressor YvoA K03710 K03710; GntR family transcriptional regulator D NG74_03306 lutR; HTH-type transcriptional regulator LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D NG74_00558 gabR_3; HTH-type transcriptional regulatory protein GabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D NG74_00552 gabR_2; HTH-type transcriptional regulatory protein GabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D NG74_00391 gabR_1; HTH-type transcriptional regulatory protein GabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D NG74_03962 norG; HTH-type transcriptional regulator NorG K18907 norG; GntR family transcriptional regulator, regulator for abcA and norABC D NG74_02884 ytrA_2; HTH-type transcriptional repressor YtrA K07979 ytrA; GntR family transcriptional regulator C TetR/AcrR family D NG74_02700 fadR; Fatty acid metabolism regulator protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D NG74_00508 comR; HTH-type transcriptional repressor ComR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D NG74_03211 acuR; Transcriptional regulator AcuR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D NG74_00278 yxaF_1; putative HTH-type transcriptional regulator YxaF K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor D NG74_03390 yxaF_2; putative HTH-type transcriptional regulator YxaF K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor D NG74_02549 bm3R1_3; HTH-type transcriptional repressor Bm3R1 K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon D NG74_02803 yttP; putative HTH-type transcriptional regulator YttP K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D NG74_00426 lrpC; HTH-type transcriptional regulator LrpC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D NG74_03503 lrp_1; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D NG74_02686 gerE; Spore germination protein GerE K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein D NG74_00633 NB-ARC domain protein K16247 gutR; LuxR family transcriptional regulator, glucitol operon activator C MarR family D NG74_03538 putative HTH-type transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D NG74_01030 hpr; HTH-type transcriptional regulator Hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr D NG74_01399 mhqR_3; HTH-type transcriptional regulator MhqR K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D NG74_01368 mhqR_2; HTH-type transcriptional regulator MhqR K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D NG74_03643 yusO_6; putative HTH-type transcriptional regulator YusO K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D NG74_01345 ohrR_2; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D NG74_01243 MarR family protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D NG74_00933 yusO_1; putative HTH-type transcriptional regulator YusO K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D NG74_01794 glnR; HTH-type transcriptional regulator GlnR K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D NG74_00986 merR1; Mercuric resistance operon regulatory protein K11923 cueR; MerR family transcriptional regulator, copper efflux regulator D NG74_00550 adhR; HTH-type transcriptional regulator AdhR K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator D NG74_01365 tnrA; HTH-type transcriptional regulator TnrA K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator D NG74_00753 yfmP; HTH-type transcriptional regulator YfmP K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon C Fur family D NG74_02266 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D NG74_02445 zur; Zinc-specific metallo-regulatory protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D NG74_00877 perR; Peroxide operon regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family C CRP/FNR family D NG74_01352 yeiL; Regulatory protein YeiL K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator C Rrf2 family D NG74_00971 nsrR; HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D NG74_02587 cymR; HTH-type transcriptional regulator CymR K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D NG74_03760 aseR; HTH-type transcriptional repressor AseR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D NG74_01963 czrA; HTH-type transcriptional repressor CzrA K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor D NG74_03902 sdpR; Transcriptional repressor SdpR K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons C XRE family D NG74_02400 sinR_1; HTH-type transcriptional regulator SinR K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation D NG74_03327 sinR_2; HTH-type transcriptional regulator SinR K19417 slrR; XRE family transcriptional regulator, biofilm formation regulator C PadR family D NG74_00841 Transcriptional regulator PadR-like family protein K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator D NG74_03649 Transcriptional regulator PadR-like family protein K10947 K10947; PadR family transcriptional regulator D NG74_03699 lineage-specific thermal regulator protein K10947 K10947; PadR family transcriptional regulator C Other families D NG74_02390 mntR; Transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D NG74_00834 glvR; HTH-type transcriptional regulator GlvR K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator D NG74_02158 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D NG74_03263 rghR_2; HTH-type transcriptional repressor RghR K22299 rghR; HTH-type transcriptional regulator, competence development regulator D NG74_03262 rghR_1; HTH-type transcriptional repressor RghR K22299 rghR; HTH-type transcriptional regulator, competence development regulator D NG74_00705 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D NG74_02961 opcR_1; HTH-type transcriptional repressor OpcR K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator D NG74_03274 opcR_2; HTH-type transcriptional repressor OpcR K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator D NG74_03279 opcR_3; HTH-type transcriptional repressor OpcR K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator D NG74_02817 Sugar-specific transcriptional regulator TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D NG74_00063 purR_1; Pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D NG74_00831 acoR; Acetoin dehydrogenase operon transcriptional activator AcoR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D NG74_03185 rsoA; Sigma-O factor regulatory protein RsoA K26990 rsoA; sigma-O factor regulatory protein RsoA D NG74_02714 cdaR_2; Carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator D NG74_03903 rocR_2; Arginine utilization regulatory protein RocR K06714 rocR; arginine utilization regulatory protein D NG74_00622 rex; Redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D NG74_01662 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D NG74_03629 hypothetical protein K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D NG74_00481 ndoAI; Antitoxin EndoAI K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI C Other families B Other transcription factors C BglG family D NG74_03800 licT; Transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator D NG74_03704 sacY; Levansucrase and sucrase synthesis operon antiterminator K26932 sacT; sacPA operon transcriptional antiterminator D NG74_01422 glcT; PtsGHI operon antiterminator K03480 glcT; transcriptional antiterminator D NG74_00417 mtlR; Transcriptional regulator MtlR K03483 mtlR; mannitol operon transcriptional activator D NG74_02543 licR_1; putative licABCH operon regulator K02538 manR; mannose operon transcriptional activator D NG74_03754 licR_2; putative licABCH operon regulator K03491 licR; probable licABCH operon transcriptional regulator C Others D NG74_03239 csoR_2; Copper-sensing transcriptional repressor CsoR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D NG74_03100 pucR; Purine catabolism regulatory protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D NG74_00329 cdaR_1; Carbohydrate diacid regulator K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator D NG74_00053 abrB; Transition state regulatory protein AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D NG74_01480 abh; Putative transition state regulator Abh K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D NG74_00072 spoVT; Stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D NG74_03982 spo0C; Chromosome-partitioning protein Spo0J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D NG74_03984 noc; Nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D NG74_00513 carD; RNA polymerase-binding transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D NG74_00960 Glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator D NG74_02364 argR; Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D NG74_01807 nagC_2; N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor D NG74_02485 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D NG74_01180 tenA; Thiaminase-2 K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D NG74_01181 tenI; Regulatory protein TenI K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10] D NG74_00106 ctsR; Transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response D NG74_03393 DNA-binding transcriptional activator PspC K03973 pspC; phage shock protein C D NG74_03289 cggR; Central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator D NG74_03825 deoR; Deoxyribonucleoside regulator K05346 deoR; deoxyribonucleoside regulator D NG74_01141 Purine-binding protein precursor K05519 med; transcriptional activator of comK gene D NG74_02192 mtrB; Transcription attenuation protein MtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D NG74_01590 pyrR; Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D NG74_03648 rsfA_2; Prespore-specific transcriptional regulator RsfA K06314 rsfA; prespore-specific regulator D NG74_01426 Transcriptional regulator protein (SplA) K06315 splA; transcriptional regulator of the spore photoproduct lyase operon D NG74_00553 paiB; Protease synthase and sporulation protein PAI 2 K07734 paiB; transcriptional regulator D NG74_02746 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D NG74_03816 hutP; Hut operon positive regulatory protein K09683 hutP; hut operon positive regulatory protein D NG74_01068 comK; Competence transcription factor K02250 comK; competence protein ComK D NG74_01556 mraZ; Protein MraZ K03925 mraZ; transcriptional regulator MraZ D NG74_03189 yvrL; Membrane-bound negative regulator YvrL K26991 yvrL; membrane-bound negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0