+F Repair protein KO #

  DNA Repair and Recombination Proteins - Burkholderia pseudomallei K96243

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BPSL0862 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BPSL2349 putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BPSL3055 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BPSL0527 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BPSL1103 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E BPSS0856 conserved hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BPSL3013 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BPSL0903 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BPSL0862 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BPSL0100 O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BPSL2349 putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BPSL3055 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BPSS2233 putative DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BPSL2183 putative phage-related DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BPSL0101 putative DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BPSL2242 HhH-GPD superfamily base excision DNA repair protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BPSL0527 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BPSL3317 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BPSL0526 mutM; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BPSL1103 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BPSL2315 endonuclease/exonuclease/phosphatase family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BPSL0191 endonuclease/exonuclease/phosphatase family protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E BPSL2279 putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BPSL2164 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BPSS1770 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BPSL0545 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BPSS0058 uvrA; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BPSS0356 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E BPSL2420 putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E BPSL1979 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BPSS1770 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BPSL2164 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BPSL3221 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BPSL3220 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BPSL3187 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BPSL2562 rpoZ; DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BPSL2100 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BPSL2252 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E BPSL2814 mutL; putative DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BPSL0879 putative exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BPSS1764 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BPSL1117 dnaE; putative DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BPSL0074 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BPSL0966 putative DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E BPSL2936 putative DNA polymerase III K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BPSL1437 putative DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BPSL1341 dnaQ; DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BPSL2556 possible DNA polymerase/helicase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BPSL1498 dnaX; DNA polymerase III subunit gamma K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BPSL2164 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BPSL1979 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BPSL0547 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BPSL1283 putative exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E BPSL1282 putative exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E BPSL1284 putative exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BPSL0776 putative recombinase A K03553 recA; recombination protein RecA E BPSL2898 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E BPSL2899 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BPSL2897 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BPSL3390 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BPSL1459 putative primosomal replication protein K02686 priB; primosomal replication protein N D RecFOR pathway proteins E BPSL0776 putative recombinase A K03553 recA; recombination protein RecA E BPSL2178 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E BPSL2867 recG; putative ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BPSL2279 putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BPSL2427 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E BPSL1500 recR; recombination protein K06187 recR; recombination protein RecR E BPSL2834 putative RecN DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E BPSL2898 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E BPSL2899 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BPSL2897 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BPSS2212 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku E BPSS2211 putative ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BPSL2521 gyrA; DNA Gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BPSL0073 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F BPSL0004 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BPSL2279 putative single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BPSL2427 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F BPSL1500 recR; recombination protein K06187 recR; recombination protein RecR F BPSL2164 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F BPSL2895 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F BPSL1939 ihfA; integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha F BPSL2514 ihfB; integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta E Supressor F BPSL3219 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BPSL0545 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BPSS0058 uvrA; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BPSS0356 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F BPSL1636 putative regulatory protein K03746 hns; DNA-binding protein H-NS F BPSL2035 putative regulatory protein K03746 hns; DNA-binding protein H-NS F BPSL2060 conserved hypothetical protein K03746 hns; DNA-binding protein H-NS F BPSS0077A putative HNS-like regulatory protein K03746 hns; DNA-binding protein H-NS F BPSS0125 putative regulatory protein K03746 hns; DNA-binding protein H-NS F BPSS0796A putative H-NS-like protein K03746 hns; DNA-binding protein H-NS F BPSS0846 conserved hypothetical protein K03746 hns; DNA-binding protein H-NS F BPSS1091 conserved hypothetical protein K03746 hns; DNA-binding protein H-NS F BPSS1530 bprA; putative HNS-like regulatory protein K03746 hns; DNA-binding protein H-NS F BPSS2131 conserved hypothetical protein K03746 hns; DNA-binding protein H-NS F BPSL1658a putative DNA-biding protein, H-NS-like K03746 hns; DNA-binding protein H-NS F BPSL3281 putative HNS-like transcriptional regulator K03746 hns; DNA-binding protein H-NS F BPSL3313 HNS-like transcriptional regulator K03746 hns; DNA-binding protein H-NS F BPSS0060B putative H-NS-like DNA-binding protein K03746 hns; DNA-binding protein H-NS F BPSL1706 putative HNS-like protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BPSL2306 putative DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BPSL0776 putative recombinase A K03553 recA; recombination protein RecA D BPSL1840 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D BPSL2834 putative RecN DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D BPSL0471 conserved hypothetical protein K14161 imuB; protein ImuB D BPSL0472 putative DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D BPSL0547 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D BPSL0777 RecX family regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D BPSS0452 putative phosphoesterase K02347 polX; DNA polymerase (family X) C DNA helicases D BPSL3355 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D BPSL1530 putative ATP-dependent DNA helicase-related protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BPSS1291 putative DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D BPSL3013 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BPSL0903 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BPSS0479 putative ribonucleotide reductase protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BPSL2992 putative ribonucleoside reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BPSS2282 conserved hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BPSL2991 nrdB; ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024