+F Repair protein KO #

  DNA Repair and Recombination Proteins - Basilea psittacipulmonis

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E IX83_03530 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E IX83_07960 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E IX83_01415 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D IX83_02085 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IX83_05275 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E IX83_03530 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E IX83_07655 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E IX83_05580 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E IX83_07960 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E IX83_01415 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E IX83_00810 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E IX83_05490 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E IX83_03830 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E IX83_06380 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E IX83_06070 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E IX83_07565 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E IX83_00745 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E IX83_04965 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E IX83_07340 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E IX83_03520 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E IX83_06070 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E IX83_06380 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F IX83_08665 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F IX83_08660 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F IX83_08260 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F IX83_04135 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F IX83_06960 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E IX83_05620 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E IX83_06415 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E IX83_05155 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E IX83_00140 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E IX83_02485 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E IX83_04605 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E IX83_06790 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E IX83_01930 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E IX83_06380 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E IX83_03520 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E IX83_00775 hypothetical protein K03111 ssb; single-strand DNA-binding protein E IX83_07205 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E IX83_04940 recA; recombinase A K03553 recA; recombination protein RecA E IX83_06935 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E IX83_06930 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E IX83_06910 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E IX83_01650 primosomal protein DnaI K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E IX83_03725 hypothetical protein K02686 priB; primosomal replication protein N D RecFOR pathway proteins E IX83_04940 recA; recombinase A K03553 recA; recombination protein RecA E IX83_05205 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E IX83_01550 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E IX83_04760 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E IX83_03830 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E IX83_07965 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E IX83_01940 recR; recombination protein RecR K06187 recR; recombination protein RecR E IX83_01740 DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E IX83_04935 hypothetical protein K03554 rdgC; recombination associated protein RdgC E IX83_06935 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E IX83_06930 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E IX83_06910 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E IX83_03035 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F IX83_05955 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F IX83_00145 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F IX83_04210 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F IX83_03830 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F IX83_07965 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F IX83_01940 recR; recombination protein RecR K06187 recR; recombination protein RecR F IX83_06380 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F IX83_06920 hypothetical protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F IX83_07570 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F IX83_05925 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F IX83_05895 ATP-binding protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F IX83_06940 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F IX83_07565 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F IX83_00745 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F IX83_04965 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D IX83_03120 hypothetical protein K03502 umuC; DNA polymerase V C Other SOS response factors D IX83_04940 recA; recombinase A K03553 recA; recombination protein RecA D IX83_04975 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D IX83_01740 DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D IX83_00775 hypothetical protein K03111 ssb; single-strand DNA-binding protein D IX83_07205 hypothetical protein K03111 ssb; single-strand DNA-binding protein D IX83_04945 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D IX83_03490 hypothetical protein K03658 helD; DNA helicase IV [EC:5.6.2.4] D IX83_01860 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D IX83_02085 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IX83_05275 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D IX83_06585 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D IX83_06580 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024