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Transcription Machinery - Bradymonas sediminis
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E DN745_02350 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E DN745_01135 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E DN745_02465 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E DN745_02470 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E DN745_17405 hypothetical protein K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E DN745_10805 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E DN745_02845 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E DN745_13090 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E DN745_08665 RNA polymerase subunit sigma-24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E DN745_19005 RNA polymerase subunit sigma-24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E DN745_19015 RNA polymerase subunit sigma-24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E DN745_16670 RNA polymerase subunit sigma-70 K03089 rpoH; RNA polymerase sigma-32 factor
E DN745_16675 RNA polymerase subunit sigma-70 K03089 rpoH; RNA polymerase sigma-32 factor
E DN745_15700 RNA polymerase subunit sigma-70 K03089 rpoH; RNA polymerase sigma-32 factor
E DN745_13350 RNA polymerase subunit sigma-70 K03089 rpoH; RNA polymerase sigma-32 factor
E DN745_18370 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
E DN745_16060 hypothetical protein K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E DN745_04545 hypothetical protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
E DN745_09510 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
E DN745_07030 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
E DN745_18000 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D Transcription elongation factors
E DN745_03005 conjugal transfer protein TraR K06204 dksA; RNA polymerase-binding transcription factor
E DN745_15980 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
E DN745_11995 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E DN745_16485 transcription termination factor Rho K03628 rho; transcription termination factor Rho
E DN745_17245 transcription termination factor Rho K03628 rho; transcription termination factor Rho
E DN745_17885 transcriptional regulator K19000 rof; Rho-binding antiterminator
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024