+E Transcription factors KO
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Transcription Factors - Bacillus subtilis subsp. spizizenii TU-B-10
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D GYO_0220 modification methylase Bsu K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D GYO_0299 modification methylase Bsu K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D GYO_0355 ybbB; transcription factor, AraC family K21701 btr; AraC family transcriptional regulator, transcriptional activator for feuABC-ybbA operon
D GYO_0740 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
C LysR family
D GYO_2217 HTH-type transcriptional regulator GltC K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D GYO_1231 HTH-type transcriptional regulator CitR K19242 citR; LysR family transcriptional regulator, repressor for citA
D GYO_0577 YclA K21755 bsdA; LysR family transcriptional regulator, salicylic acid-responsive activator of bsdBCD
D GYO_4151 YwfK K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D GYO_2213 HTH-type transcriptional regulator GltR K21959 ftsR; LysR family transcriptional regulator, cell division regulator
C DeoR family
D GYO_1774 transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D GYO_4007 spoIIID; sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D GYO_4384 DNA-binding protein iolR K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D GYO_3993 transcriptional regulator K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D GYO_2789 CBS domain protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D GYO_0613 YcnK K21601 ycnK; DeoR family transcriptional regulator, copper-sensing transcriptional repressor
C LacI family
D GYO_3749 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYO_3222 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYO_3275 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYO_3950 ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D GYO_2437 HTH-type transcriptional regulator KdgR K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D GYO_1360 NTD biosynthesis operon regulator NtdR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D GYO_1546 transcriptional regulator K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor
C GntR family
D GYO_3722 arabinose metabolism transcriptional repressor K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D GYO_1047 treR; trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D GYO_4420 transcriptional regulator, GntR family K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA
D GYO_0843 transcriptional regulator K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D GYO_3556 HTH-type transcriptional regulator FrlR K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator
D GYO_0435 transcriptional regulator K24966 gamR; GntR family transcriptional regulator, amino sugar utilization regulator
D GYO_3840 transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D GYO_2038 UTRA domain protein K03710 K03710; GntR family transcriptional regulator
D GYO_0449 YcbG K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D GYO_0605 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D GYO_1237 YdeL K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D GYO_2288 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D GYO_0753 YdeL K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D GYO_0770 transcriptional regulator, GntR family K18907 norG; GntR family transcriptional regulator, regulator for abcA and norABC
D GYO_3297 YtrA K07979 ytrA; GntR family transcriptional regulator
D GYO_4408 gluconate operon transcriptional repressor K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor
C TetR/AcrR family
D GYO_3102 YsiA K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D GYO_0716 TetR-family regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D GYO_0947 YezE K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D GYO_0469 transcriptional regulator, TetR family K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D GYO_4399 transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D GYO_2954 YrhI K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon
C Lrp/AsnC family
D GYO_0643 HTH-type transcriptional regulator lrpC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYO_0715 transcriptional regulator, Lrp/AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYO_0751 HTH-type transcriptional regulator LrpA K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYO_0720 HTH-type transcriptional regulator LrpA K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYO_3967 YwrC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D GYO_0914 transcriptional regulator, asnc family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D GYO_3087 germination protein gerE K01994 gerE; LuxR family transcriptional regulator, transcriptional regulator of spore coat protein
D GYO_0870 tetratricopeptide repeat family K16247 gutR; LuxR family transcriptional regulator, glucitol operon activator
C MarR family
D GYO_4008 YwoH K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D GYO_1292 protease production regulatory protein hpr K09682 hpr; MarR family transcriptional regulator, protease production regulatory protein HPr
D GYO_1695 YkvE K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D GYO_1658 YkoM K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D GYO_1634 ohrR; organic hydroperoxide resistance transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D GYO_2105 HTH-type transcriptional regulator GlnR K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D GYO_1247 HTH-type transcriptional regulator CueR K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D GYO_2647 multidrug-efflux transporter 1 regulator K19575 bmrR; MerR family transcriptional regulator, activator of bmr gene
D GYO_2913 BmrR K19575 bmrR; MerR family transcriptional regulator, activator of bmr gene
D GYO_4025 transcriptional regulator K21743 mta; MerR family transcriptional regulator, multidrug-efflux activator
D GYO_2933 transcriptional regulator, MerR family K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D GYO_1655 HTH-type transcriptional regulator TnrA K23776 tnrA; MerR family transcriptional regulator, global nitrogen regulator
D GYO_1002 HTH-type transcriptional regulator YfmP K21902 yfmP; MerR family transcriptional regulator, repressor of the yfmOP operon
C Fur family
D GYO_2588 ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D GYO_2774 zur; Fur family metalloregulatory protein K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D GYO_1141 perR; PerR peroxide-sensing regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
C Rrf2 family
D GYO_1226 YhdE K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D GYO_2991 rrf2 family protein family protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D GYO_0760 YdeT K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D GYO_2311 YozA K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D GYO_2721 sinR; HTH-type transcriptional regulator SinR K19449 sinR; XRE family transcriptional regulator, master regulator for biofilm formation
D GYO_0820 transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D GYO_3772 slr; SinR-like transcription regulator K19417 slrR; XRE family transcriptional regulator, biofilm formation regulator
C PadR family
D GYO_1104 transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D GYO_3121 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D GYO_4190 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
C Other families
D GYO_2712 transcriptional regulator mntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D GYO_1087 HTH-type transcriptional regulator GlvR K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator
D GYO_2471 birA; Biotin transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D GYO_1363 oligopeptide ABC transporter, substrate-binding protein K11925 sgrR; SgrR family transcriptional regulator
D GYO_3684 YvaO K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D GYO_3683 transcriptional repressor RghR K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D GYO_3385 YuaC K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D GYO_3702 conserved hypothetical protein K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D GYO_3707 conserved hypothetical protein K22301 opcR; HTH-type transcriptional regulator, osmoprotectant uptake regulator
D GYO_2948 YrhO K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D GYO_1079 transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D GYO_3630 conserved hypothetical protein K26990 rsoA; sigma-O factor regulatory protein RsoA
D GYO_3114 carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator
D GYO_4444 arginine utilization regulatory protein RocR K06714 rocR; arginine utilization regulatory protein
D GYO_0861 redox-sensing transcriptional repressor rex K01926 rex; redox-sensing transcriptional repressor
D GYO_1971 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D GYO_2258 transcription regulator, Cro/CI family -related protein K07727 K07727; putative transcriptional regulator
D GYO_1176 conserved domain protein K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D GYO_0686 antitoxin EndoAI K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D GYO_2884 transcription antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator
D GYO_4317 licT; transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D GYO_4239 sacY; levansucrase and sucrase synthesis operon antiterminator K26931 sacY; levansucrase and sucrase synthesis operon transcriptional antiterminator
D GYO_4197 sacPA operon antiterminator K26932 sacT; sacPA operon transcriptional antiterminator
D GYO_1722 glcT; transcription antiterminator, GlcT K03480 glcT; transcriptional antiterminator
D GYO_0634 HTH domain family K03483 mtlR; mannitol operon transcriptional activator
D GYO_1503 HTH domain family K02538 manR; mannose operon transcriptional activator
D GYO_4261 HTH domain family K03491 licR; probable licABCH operon transcriptional regulator
C Others
D GYO_3665 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D GYO_2889 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D GYO_3535 purine catabolism regulatory protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D GYO_0529 YcgP K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D GYO_0046 abrB; transition state regulatory protein AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D GYO_1784 abh; putative transisition state regulator Abh K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D GYO_0067 spoVT; sporulation transcriptional regulator SpoVT K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D GYO_4511 spo0J; stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GYO_4514 protein YyaA K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D GYO_0733 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D GYO_1215 glpP; glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator
D GYO_2684 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D GYO_2113 xylose repressor K02565 nagC; N-acetylglucosamine repressor
D GYO_2817 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D GYO_1470 tena/thi-4 family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D GYO_1471 regulatory protein TenI K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10]
D GYO_0109 transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D GYO_3849 conserved domain protein K03973 pspC; phage shock protein C
D GYO_3719 cggR; central glycolytic gene regulator CggR K05311 cggR; central glycolytic genes regulator
D GYO_4351 deoxyribonucleoside regulator K05346 deoR; deoxyribonucleoside regulator
D GYO_1434 med; transcriptional activator protein med K05519 med; transcriptional activator of comK gene
D GYO_2505 transcription attenuation protein mtrB K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein)
D GYO_1896 PyrR bifunctional protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D GYO_4148 rsfA; forespore-specific transcriptional regulator RsfA K06314 rsfA; prespore-specific regulator
D GYO_1726 splA; negative regulator of the spore photoproduct lyase operon K06315 splA; transcriptional regulator of the spore photoproduct lyase operon
D GYO_3506 negative regulator pai 2 K07734 paiB; transcriptional regulator
D GYO_3150 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D GYO_4341 Hut operon positive regulatory protein K09683 hutP; hut operon positive regulatory protein
D GYO_1344 comK; competence transcription factor ComK K02250 comK; competence protein ComK
D GYO_1859 mraZ; MraZ protein K03925 mraZ; transcriptional regulator MraZ
D GYO_3634 conserved hypothetical protein K26991 yvrL; membrane-bound negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 5, 2024
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Classification taken and modified from TRANSFAC 7.0