+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Caballeronia insecticola
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D BRPE64_ACDS19660 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D BRPE64_ACDS20330 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C BRPE64_ACDS19650 era; GTPase Era K03595 era; GTPase
C BRPE64_ACDS23940 GTPase obg K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C BRPE64_ACDS28310 dksA; transcriptional regulator TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
C BRPE64_CCDS01420 transcriptional regulator TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
C BRPE64_ACDS16770 nusA; NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C BRPE64_ACDS08000 nusB; N utilization substance protein B homolog K03625 nusB; transcription antitermination protein NusB
C BRPE64_ACDS26000 nusG; transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D BRPE64_ACDS06060 rsuA; pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D BRPE64_ACDS23040 ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BRPE64_ACDS00310 Fmu rRNA SAM-dependent methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D BRPE64_ACDS05820 NOL1/NOP2/Sun family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D BRPE64_ACDS02360 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BRPE64_ACDS23360 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BRPE64_ACDS27710 ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BRPE64_ACDS24250 ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BRPE64_ACDS19850 putative uncharacterized protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BRPE64_ACDS28750 ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D BRPE64_ACDS16490 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BRPE64_ACDS19330 ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D BRPE64_ACDS09330 ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BRPE64_ACDS28330 putative uncharacterized protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D BRPE64_ACDS17090 putative uncharacterized protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D BRPE64_ACDS03510 putative RNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D BRPE64_ACDS15900 dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BRPE64_ACDS15930 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D BRPE64_ACDS16790 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BRPE64_ACDS19890 rluC; pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D BRPE64_ACDS15690 rluD; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BRPE64_ACDS05680 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D BRPE64_ACDS11850 pseudouridine synthase Rsu K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C BRPE64_ACDS11590 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C BRPE64_ACDS20420 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C BRPE64_ACDS15630 ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C BRPE64_ACDS23700 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C BRPE64_ACDS11740 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C BRPE64_ACDS18010 cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C BRPE64_ACDS19660 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C BRPE64_ACDS19910 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C BRPE64_ACDS09310 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
C BRPE64_ACDS22080 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C BRPE64_ACDS00110 dbpA; DEAD/DEAH box helicase domain protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
B GTPases
C BRPE64_ACDS19650 era; GTPase Era K03595 era; GTPase
C BRPE64_ACDS20360 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C BRPE64_ACDS15840 der; GTPase Der K03977 engA; GTPase
C BRPE64_ACDS23940 GTPase obg K03979 obgE; GTPase [EC:3.6.5.-]
C BRPE64_ACDS15820 hflX; GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C BRPE64_ACDS04970 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C BRPE64_ACDS07560 spoT; (P)ppGpp synthetase I (GTP pyrophosphokinase) SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C BRPE64_ACDS16750 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C BRPE64_ACDS16780 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C BRPE64_ACDS20170 putative uncharacterized protein K14761 rlbA; ribosome-associated protein
C BRPE64_ACDS09340 iojap-like protein K09710 ybeB; ribosome-associated protein
C BRPE64_ACDS04220 probable rRNA maturation factor K07042 ybeY; probable rRNA maturation factor
C BRPE64_ACDS19340 putative uncharacterized protein K07574 yhbY; RNA-binding protein
C BRPE64_ACDS20310 UPF0307 protein BC1003_2564 K09889 yjgA; ribosome-associated protein
C BRPE64_ACDS02530 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
C BRPE64_ACDS24550 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C BRPE64_ACDS19830 putative uncharacterized protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024