+F Repair protein KO
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DNA Repair and Recombination Proteins - Caldithrix abyssi
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Cabys_2717 methylated-DNA-(protein)-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E Cabys_3219 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Cabys_598 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Cabys_773 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Cabys_3518 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Cabys_159 nth DNA-(apurinic or apyrimidinic site) lyase/endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E Cabys_149 Rad3-related DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D Cabys_4007 8-oxo-dGTP diphosphatase/A/G-specific adenine glycosylase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Cabys_4166 ADP-ribose pyrophosphatase/8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Cabys_2717 methylated-DNA-(protein)-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E Cabys_3219 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Cabys_2779 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E Cabys_598 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E Cabys_773 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Cabys_3518 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Cabys_1860 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Cabys_2328 DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E Cabys_159 nth DNA-(apurinic or apyrimidinic site) lyase/endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Cabys_712 exodeoxyribonuclease-3 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E Cabys_2481 nfo; nfo Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E Cabys_72 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Cabys_2603 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E Cabys_2710 ligA; ligA DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E Cabys_1696 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Cabys_2477 uvrA; uvrA Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E Cabys_2096 uvrB; uvrB Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E Cabys_2695 uvrC; uvrC Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E Cabys_73 exonuclease, DNA polymerase III, epsilon subunit family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Cabys_768 DNA helicase-2 / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Cabys_2794 DNA helicase-2 / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Cabys_1696 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E Cabys_2710 ligA; ligA DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F Cabys_895 rpoB; rpoB DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F Cabys_896 rpoC; rpoC DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F Cabys_928 rpoA; rpoA DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F Cabys_3536 mfd transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Cabys_2847 mutS; mutS DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E Cabys_1596 mutS2; mutS2 DNA mismatch repair protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E Cabys_2190 mutL; mutL DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E Cabys_2692 xseA; xseA Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E Cabys_2691 xseB; xseB Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E Cabys_2372 DNA polymerase-3 subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E Cabys_2790 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E Cabys_2 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E Cabys_74 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E Cabys_187 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E Cabys_714 DNA polymerase-3 subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E Cabys_3271 DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E Cabys_2710 ligA; ligA DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E Cabys_73 exonuclease, DNA polymerase III, epsilon subunit family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Cabys_768 DNA helicase-2 / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Cabys_2794 DNA helicase-2 / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Cabys_204 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Cabys_3939 recA; recA recombination protein RecA K03553 recA; recombination protein RecA
E Cabys_1423 ruvA; ruvA Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Cabys_1424 ruvB; ruvB Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Cabys_1422 ruvC; ruvC Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E Cabys_1220 priA; priA replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E Cabys_3939 recA; recA recombination protein RecA K03553 recA; recombination protein RecA
E Cabys_1855 DNA repair protein RadA/Sms K04485 radA; DNA repair protein RadA/Sms
E Cabys_3 recF; recF DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E Cabys_3440 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E Cabys_3724 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E Cabys_72 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Cabys_2603 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Cabys_1652 recO; recO DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E Cabys_3273 recR; recR DNA replication and repair protein RecR K06187 recR; recombination protein RecR
E Cabys_3882 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E Cabys_1423 ruvA; ruvA Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Cabys_1424 ruvB; ruvB Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Cabys_1422 ruvC; ruvC Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E Cabys_3750 ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D Other HR factor
E Cabys_2828 cas1 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
E Cabys_3804 cas1; cas1 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Cabys_6 gyrA; gyrA DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F Cabys_5 gyrB; gyrB DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F Cabys_70 topA; topA DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F Cabys_2157 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F Cabys_72 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Cabys_2603 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Cabys_1652 recO; recO DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F Cabys_3273 recR; recR DNA replication and repair protein RecR K06187 recR; recombination protein RecR
F Cabys_2710 ligA; ligA DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F Cabys_54 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Cabys_289 ATP-dependent DNA helicase, RecQ-like K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Cabys_2477 uvrA; uvrA Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F Cabys_2096 uvrB; uvrB Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Cabys_804 dinB; dinB DNA polymerase-4 K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Cabys_1718 dinB; dinB DNA polymerase-4/DNA polymerase IV (DinB-like DNA polymerase) K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D Cabys_3939 recA; recA recombination protein RecA K03553 recA; recombination protein RecA
D Cabys_756 lexA; lexA SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Cabys_3882 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Cabys_204 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cabys_3940 recX; recX regulatory protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D Cabys_739 DNA polymerase (family 10) K02347 polX; DNA polymerase (family X)
C DNA helicases
D Cabys_2997 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D Cabys_4007 8-oxo-dGTP diphosphatase/A/G-specific adenine glycosylase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Cabys_4166 ADP-ribose pyrophosphatase/8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Cabys_353 ribonucleoside-diphosphate reductase class II K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
D Cabys_2881 phosphoesterase RecJ domain-containing protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D Cabys_3782 phosphoesterase RecJ domain-containing protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024