+E Ribosome biogenesis KO
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Ribosome Biogenesis - Croceibacter atlanticus
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D CA2559_03140 putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C CA2559_01555 putative GTP-binding protein K03595 era; GTPase
C CA2559_05575 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C CA2559_02485 DnaK suppressor protein, putative K06204 dksA; RNA polymerase-binding transcription factor
C CA2559_01340 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C CA2559_12923 putative N utilization substance protein K03625 nusB; transcription antitermination protein NusB
C CA2559_00050 putative transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D CA2559_03760 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CA2559_10303 putative sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CA2559_10608 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D CA2559_13143 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CA2559_07365 glucose-inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CA2559_06555 S-adenosyl-methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CA2559_12753 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin)methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CA2559_02430 methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D CA2559_05650 putative tRNA:rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CA2559_05145 putative SpoU rRNA methylase family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CA2559_13158 SpoU rRNA methylase family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CA2559_10393 hypothetical protein K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D CA2559_08411 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CA2559_11313 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D CA2559_08561 putative N6-adenine-specific DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D CA2559_07736 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CA2559_08576 putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D CA2559_00765 putative ribosomal large subunit pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CA2559_08006 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CA2559_10688 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CA2559_02735 hypothetical protein K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CA2559_10398 RNA pseudouridine synthase family protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D CA2559_13243 pseudouridine synthase, Rsu K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C CA2559_02460 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C CA2559_04645 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C CA2559_13538 putative Fe-S oxidoreductase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C CA2559_13478 putative ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C CA2559_03140 putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C CA2559_02680 Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C CA2559_06155 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C CA2559_10148 ATP-independent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C CA2559_08811 ATP-dependent RNA helicase, DEAD/DEAH box family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C CA2559_09353 ATP-dependent RNA helicase, DEAD/DEAH box family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C CA2559_01555 putative GTP-binding protein K03595 era; GTPase
C CA2559_07390 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C CA2559_04795 GTP-binding protein EngA K03977 engA; GTPase
C CA2559_05575 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C CA2559_04515 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C CA2559_06115 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C CA2559_08776 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C CA2559_03290 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C CA2559_01345 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C CA2559_07936 hypothetical protein K09710 ybeB; ribosome-associated protein
C CA2559_03360 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C CA2559_00065 putative sigma(54) modulation protein K05808 hpf; ribosome hibernation promoting factor
C CA2559_10503 site-specific recombinase, phage integrase family/ribosomal subunitinterface protein K05809 raiA; ribosome-associated inhibitor A
C CA2559_09848 putative ATP/GTP-binding protein K06942 ychF; ribosome-binding ATPase
C CA2559_02335 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024