+F Repair protein KO
#
DNA Repair and Recombination Proteins - Cajanus cajan (pigeon pea)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 109803300 DNA oxidative demethylase ALKBH2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 109797750 DExH-box ATP-dependent RNA helicase DExH14 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 109800651 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 109798725 uracil-DNA glycosylase, mitochondrial isoform X1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 109797658 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 109808354 adenine DNA glycosylase isoform X1 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 109797292 N-glycosylase/DNA lyase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 109815651 endonuclease III homolog 1, chloroplastic K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 109805535 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 109792688 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 109792342 LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site) lyase 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 109808737 DNA polymerase delta catalytic subunit isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 109796990 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 109811908 LOW QUALITY PROTEIN: uncharacterized protein LOC109811908 K03504 POLD3; DNA polymerase delta subunit 3
F 109814516 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 109798448 DNA polymerase epsilon catalytic subunit A isoform X1 K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 109812126 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 109798348 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 109806086 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 109794257 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 109804132 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 109809889 flap endonuclease 1 isoform X2 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 109799007 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E 109801140 tyrosyl-DNA phosphodiesterase 1 isoform X1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 109806112 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 109818171 polynucleotide 3'-phosphatase ZDP K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 109803646 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 109796726 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 109818414 poly [ADP-ribose] polymerase 2 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 109798390 protein ADP-ribosyltransferase PARP3 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 109818552 DNA repair protein RAD4 isoform X1 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 109808312 ubiquitin receptor RAD23b K10839 RAD23; UV excision repair protein RAD23
F 109801548 ubiquitin receptor RAD23c K10839 RAD23; UV excision repair protein RAD23
F 109805951 ubiquitin receptor RAD23d K10839 RAD23; UV excision repair protein RAD23
F 109818572 ubiquitin receptor RAD23c K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 109806089 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 109790424 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 109815299 cullin-4 K10609 CUL4; cullin 4
F 109799399 DNA damage-binding protein 1a K10610 DDB1; DNA damage-binding protein 1
F 109795279 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 109815273 uncharacterized protein LOC109815273 K15082 RAD7; DNA repair protein RAD7
F 109808768 uncharacterized protein LOC109808768 K15082 RAD7; DNA repair protein RAD7
F 109817394 DNA repair protein RAD16 isoform X2 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 109801014 DNA-directed RNA polymerase II subunit 1 isoform X1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 109803307 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 109806491 DNA-directed RNA polymerases II, IV and V subunit 3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 109803854 DNA-directed RNA polymerases IV and V subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 109818986 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 109804048 DNA-directed RNA polymerases IV and V subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 109817146 DNA-directed RNA polymerases IV and V subunit 5B K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 109803852 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 109815637 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 109798885 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 109799842 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 109792193 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 109789298 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 109790467 LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 109804461 DNA-directed RNA polymerases II, IV and V subunit 8B K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 109789332 DNA-directed RNA polymerases II and V subunit 8A K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 109808967 DNA-directed RNA polymerases II, IV and V subunit 9B K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 109791094 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 109809796 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 109797574 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 109798857 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 109797120 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 109806089 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 109790424 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 109815299 cullin-4 K10609 CUL4; cullin 4
F 109799399 DNA damage-binding protein 1a K10610 DDB1; DNA damage-binding protein 1
F 109797996 WD repeat-containing protein ATCSA-1 isoform X2 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 109813987 protein CHROMATIN REMODELING 8 K10841 ERCC6; DNA excision repair protein ERCC-6
F 109797806 UV-stimulated scaffold protein A homolog isoform X1 K23720 UVSSA; UV-stimulated scaffold protein A
F 109811548 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 109791298 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 109800779 general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 109817295 general transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 109805015 general transcription and DNA repair factor IIH subunit TFB1-1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 109796803 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 109809285 general transcription and DNA repair factor IIH subunit TFB4 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 109805331 general transcription and DNA repair factor IIH subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 109804162 general transcription and DNA repair factor IIH subunit TFB5 isoform X1 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 109801343 cyclin-dependent kinase D-3 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 109803552 cyclin-dependent kinase D-3 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 109793283 cyclin-H1-1 isoform X1 K06634 CCNH; cyclin H
E 109805734 uncharacterized protein LOC109805734 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E 109814925 uncharacterized protein LOC109814925 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 109809736 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109800998 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109817794 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109808632 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 109809317 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 109788406 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 109797839 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 109795842 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Other NER factors
E 109790266 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 109800600 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 109790073 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 109799007 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 109808930 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 109812335 cullin-3A K03869 CUL3; cullin 3
E 109816248 cullin-3A K03869 CUL3; cullin 3
E 109800343 cullin-3A K03869 CUL3; cullin 3
E 109805967 elongin-C K03872 ELOC; elongin-C
E 109793922 polyubiquitin 8 isoform X1 K03873 ELOB; elongin-B
E 109814665 uncharacterized protein LOC109814665 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 109809762 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 109804654 DNA mismatch repair protein MSH3 isoform X1 K08736 MSH3; DNA mismatch repair protein MSH3
E 109813467 DNA mismatch repair protein MSH7 K08737 MSH6; DNA mismatch repair protein MSH6
E 109814728 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 109816139 DNA mismatch repair protein MLH1 K08734 MLH1; DNA mismatch repair protein MLH1
E 109816337 DNA mismatch repair protein PMS1 K10858 PMS2; DNA mismatch repair protein PMS2
E 109799793 DNA mismatch repair protein MLH3 isoform X1 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 109808737 DNA polymerase delta catalytic subunit isoform X1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 109796990 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 109811908 LOW QUALITY PROTEIN: uncharacterized protein LOC109811908 K03504 POLD3; DNA polymerase delta subunit 3
E 109814516 DNA polymerase delta subunit 4 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 109809736 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109800998 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109817794 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109808632 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 109809317 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 109788406 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 109797839 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 109795842 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 109814236 replication factor C subunit 1 isoform X1 K10754 RFC1; replication factor C subunit 1
E 109808291 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 109797794 replication factor C subunit 2 isoform X1 K10755 RFC2_4; replication factor C subunit 2/4
E 109800497 uncharacterized protein LOC109800497 K10756 RFC3_5; replication factor C subunit 3/5
E 109810270 uncharacterized protein LOC109810270 K10756 RFC3_5; replication factor C subunit 3/5
E 109808603 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 109818046 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 109806086 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 109794257 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 109804132 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 109799991 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 109789659 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 109799007 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 109815707 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 109805909 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 109807917 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 109796867 nijmegen breakage syndrome 1 protein K10867 NBN; nibrin
D BRCA1-core complex
E 109816401 protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 109804564 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 109791206 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 109796883 uncharacterized protein LOC109796883 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 109805407 BRISC and BRCA1-A complex member 2 K12173 BRE; BRCA1-A complex subunit BRE
E 109805779 lys-63-specific deubiquitinase BRCC36 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 109800980 Fanconi anemia group J protein homolog isoform X1 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 109807051 LOW QUALITY PROTEIN: BRCT domain-containing protein At4g02110 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 109788168 DNA topoisomerase 2-binding protein 1-A K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 109805909 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 109807917 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 109796867 nijmegen breakage syndrome 1 protein K10867 NBN; nibrin
D BRCA complex
E 109811696 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B K08775 BRCA2; breast cancer 2 susceptibility protein
E 109809269 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 109809269 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 109805524 DNA repair protein RAD51 homolog 2 isoform X1 K10869 RAD51L1; RAD51-like protein 1
E 109797013 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 109798823 DNA repair protein RAD51 homolog 4 isoform X1 K10871 RAD51L3; RAD51-like protein 3
E 109799205 DNA repair protein XRCC2 homolog isoform X1 K10879 XRCC2; DNA-repair protein XRCC2
E 109812434 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 109798850 DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 109806276 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 109808125 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109816578 SNF2 domain-containing protein CLASSY 1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109798388 protein CHROMATIN REMODELING 35 isoform X1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109798389 protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109816483 protein CHROMATIN REMODELING 25 isoform X1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109818002 SNF2 domain-containing protein CLASSY 2 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109790640 SNF2 domain-containing protein CLASSY 4 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109812995 SNF2 domain-containing protein CLASSY 3 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 109815044 SNF2 domain-containing protein CLASSY 2 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 109794016 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 109815816 mediator of RNA polymerase II transcription subunit 34 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 109795385 ATP-dependent DNA helicase Q-like SIM isoform X1 K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 109817462 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 109803145 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 109810738 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 109817462 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 109803145 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 109815357 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 109814858 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 109816454 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 109799097 recQ-mediated genome instability protein 2 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 109809736 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109800998 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109817794 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 109808632 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 109809317 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 109788406 replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 109797839 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
E 109795842 replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 109805806 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 109798861 serine/threonine-protein phosphatase 4 regulatory subunit 2 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 109807553 serine/threonine-protein phosphatase 4 regulatory subunit 3 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 109798291 AP-5 complex subunit beta-1 K19022 AP5B1; AP-5 complex subunit beta-1
E 109809546 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 109817312 AP-5 complex subunit zeta-1 K19025 AP5Z1; AP-5 complex subunit zeta-1
E 109817065 AP-5 complex subunit zeta-1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 109797155 structural maintenance of chromosomes protein 5 isoform X1 K22803 SMC5; structural maintenance of chromosomes protein 5
E 109799182 structural maintenance of chromosomes protein 6B K22804 SMC6; structural maintenance of chromosomes protein 6
E 109818984 non-structural maintenance of chromosomes element 1 homolog isoform X1 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 109815571 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 109818856 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 109797900 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 109799690 crossover junction endonuclease EME1B K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 109819288 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 109818067 protein DSS1 HOMOLOG ON CHROMOSOME V K10881 SHFM1; 26 proteasome complex subunit DSS1
E 109796746 structure-specific endonuclease subunit SLX1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 109798891 structure-specific endonuclease subunit slx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 109802498 flap endonuclease GEN-like 1 isoform X2 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 109818747 flap endonuclease GEN-like 2 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 109799614 uncharacterized protein LOC109799614 isoform X3 K19026 SPG11; spatacsin
E 109807790 uncharacterized protein LOC109807790 isoform X1 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 109794813 protein MRG1 K11339 MORF4L1; mortality factor 4-like protein 1
E 109797945 protein MRG1 isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 109793161 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 109791839 ATPase family AAA domain-containing protein FIGL1 isoform X1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 109806676 zinc finger SWIM domain-containing protein 7 isoform X1 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 109807919 Werner Syndrome-like exonuclease K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 109788846 DNA-dependent metalloprotease WSS1 isoform X2 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 109812673 DNA-dependent metalloprotease WSS1 isoform X1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 109815528 single-stranded DNA-binding protein WHY1, chloroplastic K26559 WHY1; single-stranded DNA-binding protein WHY1
E 109797067 single-stranded DNA-binding protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 109808470 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 109802338 ATP-dependent DNA helicase 2 subunit KU80 isoform X1 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 109805909 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 109807917 DNA repair protein RAD50 isoform X1 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 109815365 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 109800916 DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 109803646 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 109806112 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 109807417 uncharacterized protein LOC109807417 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 109808858 uncharacterized protein LOC109808858 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 109811978 uncharacterized protein LOC109811978 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 109791242 structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X1 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 109798362 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 109790404 protein MHF1 homolog isoform X1 K11511 APITD1; centromere protein S
E 109801027 protein MHF2 homolog K15360 STRA13; centromere protein X
D Bloom's syndrome complex (BTR)
E 109817462 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 109803145 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 109815357 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 109814858 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 109816454 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 109799097 recQ-mediated genome instability protein 2 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
D Downstream FA components
E 109811696 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B K08775 BRCA2; breast cancer 2 susceptibility protein
E 109800980 Fanconi anemia group J protein homolog isoform X1 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 109792993 fanconi-associated nuclease 1 homolog isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 109809269 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 109797013 DNA repair protein RAD51 homolog 3 K10870 RAD51L2; RAD51-like protein 2
E 109789317 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
E 109796140 WD repeat-containing protein 48 K15361 WDR48; WD repeat-containing protein 48
E 109813979 LOW QUALITY PROTEIN: WD repeat-containing protein 48-like K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 109815495 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 109819031 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 109788101 serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 109789369 serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 109812010 telomerase Cajal body protein 1 isoform X1 K23314 WRAP53; telomerase Cajal body protein 1
E 109804536 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
E 109815707 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 109812796 DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 109814587 DNA polymerase kappa isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 109816479 DNA repair protein REV1 isoform X1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 109797653 LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 109812474 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 109808081 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 109815836 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 109800735 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 114914919 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 109811598 DNA repair protein RAD5A K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 109804750 DNA repair protein RAD5B K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 109817735 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 109804309 ubiquitin-conjugating enzyme E2 variant 1A K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 109813978 ubiquitin-conjugating enzyme E2 variant 1C K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 109803909 ubiquitin-conjugating enzyme E2 variant 1A K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 109789887 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 109805406 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 109811926 ubiquitin-conjugating enzyme E2 35 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 109806086 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D 109794257 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 109804132 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 109797831 cell cycle checkpoint control protein RAD9A K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 109794075 uncharacterized protein LOC109794075 K10903 HUS1; HUS1 checkpoint protein
D 109810800 uncharacterized protein LOC109810800 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 109789309 cell cycle checkpoint protein RAD17 isoform X1 K06662 HRAD17; cell cycle checkpoint protein
D 109808291 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 109797794 replication factor C subunit 2 isoform X1 K10755 RFC2_4; replication factor C subunit 2/4
D 109800497 uncharacterized protein LOC109800497 K10756 RFC3_5; replication factor C subunit 3/5
D 109810270 uncharacterized protein LOC109810270 K10756 RFC3_5; replication factor C subunit 3/5
D 109808603 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 109818046 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 109810800 uncharacterized protein LOC109810800 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 109795504 LOW QUALITY PROTEIN: protein timeless homolog K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
C Triple T complex
D 109789317 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
D 109818627 uncharacterized protein LOC109818627 isoform X1 K20403 TTI1; TELO2-interacting protein 1
D 109796821 uncharacterized protein At2g39910 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 109809649 ubiquitin-like domain-containing protein CIP73 K23390 BAG6; large proline-rich protein BAG6
D 109807469 Golgi to ER traffic protein 4 homolog K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 109796133 serine/threonine-protein kinase ATR isoform X2 K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 109791184 serine/threonine-protein kinase ATM K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 109811759 serine/threonine-protein kinase ATM K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 109810354 14-3-3-like protein D K06630 YWHAE; 14-3-3 protein epsilon
D 109796572 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 109800789 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 109802025 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 109811928 14-3-3 protein 9 K06630 YWHAE; 14-3-3 protein epsilon
D 109816968 14-3-3-like protein isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 109816845 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 109816019 14-3-3-like protein C isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 109797343 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 109804402 LOW QUALITY PROTEIN: uncharacterized protein LOC109804402 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 109788128 serine/threonine-protein kinase Nek4 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109788751 serine/threonine-protein kinase Nek5 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109817724 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109797959 serine/threonine-protein kinase Nek2 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109796171 serine/threonine-protein kinase Nek6 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109795417 serine/threonine-protein kinase Nek2 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109815864 serine/threonine-protein kinase Nek4 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109798501 LOW QUALITY PROTEIN: serine/threonine-protein kinase Nek5-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 109808718 uncharacterized protein LOC109808718 K22422 DONSON; protein downstream neighbor of Son
D 109796420 protein downstream neighbor of Son-like K22422 DONSON; protein downstream neighbor of Son
D 109817330 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 109788394 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 109798711 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 109796057 replication stress response regulator SDE2 K25059 SDE2; replication stress response regulator SDE2
D 109816647 protein DECREASED SIZE EXCLUSION LIMIT 1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 109809890 helicase and polymerase-containing protein TEBICHI K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 109814066 rDNA transcriptional regulator pol5 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 109803179 DNA-directed primase/polymerase protein isoform X1 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 109802364 DNA cross-link repair protein SNM1 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 109791367 DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 109807543 5' exonuclease Apollo K15340 DCLRE1A; DNA cross-link repair 1A protein
D 109790014 exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 109798650 exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 109787940 endonuclease V K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 109807956 DNA annealing helicase and endonuclease ZRANB3 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 109804068 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 109816915 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 109805109 endonuclease 4 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 109816867 switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 109808161 pre-mRNA-processing factor 19 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 109813908 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 109805810 cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 109799357 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 109804586 protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 109792815 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109797617 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 109797689 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 109799467 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 109819173 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 109808687 ribonucleoside-diphosphate reductase small chain A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 109800651 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 109798725 uracil-DNA glycosylase, mitochondrial isoform X1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 109802384 DNA-3-methyladenine glycosylase 1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 109797658 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 109808354 adenine DNA glycosylase isoform X1 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 109813039 uncharacterized protein LOC109813039 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109810244 uncharacterized protein LOC109810244 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109809060 uncharacterized protein LOC109809060 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109790156 uncharacterized protein LOC109790156 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109802915 LOW QUALITY PROTEIN: uncharacterized protein LOC109802915 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109793621 uncharacterized protein LOC109793621 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109793012 uncharacterized protein LOC109793012 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109789486 uncharacterized protein LOC109789486 isoform X1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 109807950 formamidopyrimidine-DNA glycosylase isoform X2 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 109815651 endonuclease III homolog 1, chloroplastic K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 109805535 endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 109792688 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 109817164 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 109805203 DNA polymerase I B, chloroplastic/mitochondrial isoform X1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 109815120 DNA polymerase I A, chloroplastic/mitochondrial K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 109805203 DNA polymerase I B, chloroplastic/mitochondrial isoform X1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 109815120 DNA polymerase I A, chloroplastic/mitochondrial K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 29293665 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 29293580 rpoC1; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 29293617 rpoC2; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 29293626 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 109795954 uncharacterized protein LOC109795954 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 109808685 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 109803207 DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 109788057 DNA repair protein recA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
E 109807704 DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 109803207 DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 109788057 DNA repair protein recA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
E 109807704 DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 109809642 uncharacterized protein LOC109809642 isoform X1 K04485 radA; DNA repair protein RadA/Sms
E 109807869 uncharacterized protein LOC109807869 K04485 radA; DNA repair protein RadA/Sms
E 109810084 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 109815223 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 109797179 DNA gyrase subunit B, chloroplastic/mitochondrial K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 109789190 uncharacterized protein LOC109789190 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 109803207 DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
D 109788057 DNA repair protein recA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
D 109807704 DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
D 109808685 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 109792815 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 109797617 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024