+D GENES KO
#
KEGG Orthology (KO) - Corynebacterium crudilactis
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:ccjz00010]
D ccrud_11940 hypothetical protein K25026 glk; glucokinase [EC:2.7.1.2]
D ccrud_09580 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D ccrud_04200 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ccrud_06010 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D ccrud_04985 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D ccrud_12490 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ccrud_07660 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D ccrud_04635 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ccrud_07670 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ccrud_07665 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D ccrud_02115 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D ccrud_04810 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ccrud_13260 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ccrud_09130 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ccrud_02815 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D ccrud_02810 hypothetical protein K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D ccrud_09895 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D ccrud_09715 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D ccrud_01945 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ccrud_13265 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ccrud_12620 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D ccrud_01705 alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_12585 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D ccrud_11405 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ccrud_08225 polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D ccrud_10330 D-hexose-6-phosphate mutarotase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D ccrud_13020 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D ccrud_12200 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D ccrud_12820 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
C 00020 Citrate cycle (TCA cycle) [PATH:ccjz00020]
D ccrud_04085 citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D ccrud_07495 acnA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D ccrud_03300 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D ccrud_05450 kgd; alpha-ketoglutarate decarboxylase K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D ccrud_01945 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ccrud_11540 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D ccrud_11545 succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D ccrud_02690 acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D ccrud_11575 acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D ccrud_01980 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D ccrud_01985 succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D ccrud_01975 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D ccrud_04955 aspA; aspartate ammonia-lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D ccrud_10585 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D ccrud_08700 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D ccrud_03425 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D ccrud_13020 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D ccrud_09895 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D ccrud_09715 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:ccjz00030]
D ccrud_04200 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ccrud_07620 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D ccrud_07630 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D ccrud_07035 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D ccrud_07720 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D ccrud_07610 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D ccrud_07615 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D ccrud_04435 hypothetical protein K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D ccrud_10770 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D ccrud_02060 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D ccrud_10320 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D ccrud_11405 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ccrud_04665 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D ccrud_11165 gluconate kinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D ccrud_13590 gluconate kinase K25031 gntK; gluconokinase [EC:2.7.1.12]
D ccrud_12490 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ccrud_04985 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D ccrud_06010 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:ccjz00040]
D ccrud_11150 glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D ccrud_11155 oxidoreductase K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D ccrud_02850 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D ccrud_12840 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D ccrud_04355 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ccrud_01950 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ccrud_07720 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D ccrud_00625 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D ccrud_02370 2,5-dioxovalerate dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00051 Fructose and mannose metabolism [PATH:ccjz00051]
D ccrud_03645 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D ccrud_03635 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D ccrud_03410 phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D ccrud_03615 GDP-mannose pyrophosphorylase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D ccrud_06010 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D ccrud_04985 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D ccrud_10010 mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D ccrud_08335 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D ccrud_08350 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D ccrud_00610 mannitol dehydrogenase K00045 E1.1.1.67; mannitol 2-dehydrogenase [EC:1.1.1.67]
D ccrud_12490 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ccrud_07660 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D ccrud_04435 hypothetical protein K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D ccrud_10770 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D ccrud_08355 PTS lactose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D ccrud_10015 PTS mannose transporter subunit IIA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
C 00052 Galactose metabolism [PATH:ccjz00052]
D ccrud_09830 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D ccrud_01675 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ccrud_02865 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ccrud_08280 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ccrud_04355 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ccrud_01950 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ccrud_11405 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ccrud_11940 hypothetical protein K25026 glk; glucokinase [EC:2.7.1.2]
D ccrud_09580 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D ccrud_13145 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D ccrud_06010 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D ccrud_05385 beta-fructosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D ccrud_11920 beta-fructosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D ccrud_10830 hypothetical protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:ccjz00053]
D ccrud_02850 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D ccrud_12840 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D ccrud_13720 PTS sugar transporter K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D ccrud_13715 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_02370 2,5-dioxovalerate dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D ccrud_02375 5-dehydro-4-deoxyglucarate dehydratase K01707 kdgD; 5-dehydro-4-deoxyglucarate dehydratase [EC:4.2.1.41]
C 00500 Starch and sucrose metabolism [PATH:ccjz00500]
D ccrud_11915 PTS beta-glucoside transporter subunit EIIBCA K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D ccrud_05385 beta-fructosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D ccrud_11920 beta-fructosidase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D ccrud_10830 hypothetical protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D ccrud_04355 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ccrud_01950 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ccrud_01650 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ccrud_12200 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D ccrud_12820 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D ccrud_05395 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D ccrud_05880 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D ccrud_09120 hypothetical protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D ccrud_10165 trehalose synthase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1]
D ccrud_10140 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D ccrud_05885 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D ccrud_05390 glycosyl transferase family 1 K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D ccrud_09255 malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
D ccrud_09295 malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
D ccrud_11845 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D ccrud_11855 trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D ccrud_11405 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ccrud_11940 hypothetical protein K25026 glk; glucokinase [EC:2.7.1.2]
D ccrud_09580 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D ccrud_04200 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ccjz00520]
D ccrud_12970 beta-N-acetylglucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D ccrud_11930 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D ccrud_11925 glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D ccrud_10005 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D ccrud_02975 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D ccrud_14615 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D ccrud_04670 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D ccrud_00915 haloacid dehalogenase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D ccrud_11500 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D ccrud_02095 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D ccrud_11945 N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D ccrud_11890 oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D ccrud_02875 epimerase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D ccrud_11940 hypothetical protein K25026 glk; glucokinase [EC:2.7.1.2]
D ccrud_09580 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D ccrud_08225 polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D ccrud_11405 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ccrud_04355 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ccrud_01950 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ccrud_02850 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D ccrud_12840 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D ccrud_09830 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D ccrud_01675 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ccrud_02865 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ccrud_08280 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ccrud_13145 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D ccrud_04200 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ccrud_03645 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D ccrud_03635 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D ccrud_03410 phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D ccrud_03615 GDP-mannose pyrophosphorylase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D ccrud_05395 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:ccjz00620]
D ccrud_09895 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D ccrud_09715 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D ccrud_01945 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ccrud_12620 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D ccrud_01705 alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D ccrud_12430 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ccrud_12435 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ccrud_13260 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ccrud_09130 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ccrud_03450 acetyl-/propionyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D ccrud_09010 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_12585 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D ccrud_02690 acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D ccrud_11575 acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D ccrud_13300 alpha-hydroxy-acid oxidizing enzyme K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D ccrud_13265 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ccrud_00265 Zn-dependent hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D ccrud_07970 Zn-dependent hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D ccrud_11070 hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1]
D ccrud_13585 malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D ccrud_03425 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D ccrud_10585 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D ccrud_08700 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D ccrud_04955 aspA; aspartate ammonia-lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D ccrud_07655 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D ccrud_13020 phosphoenolpyruvate carboxykinase K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D ccrud_02815 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D ccrud_02810 hypothetical protein K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D ccrud_10335 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D ccrud_05630 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_10645 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_01325 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ccjz00630]
D ccrud_10340 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D ccrud_10335 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D ccrud_10585 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D ccrud_04085 citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D ccrud_07495 acnA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D ccrud_05630 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_10645 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_05865 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D ccrud_03450 acetyl-/propionyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D ccrud_07440 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D ccrud_07445 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D ccrud_01360 catalase K03781 katE; catalase [EC:1.11.1.6]
D ccrud_09870 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D ccrud_09755 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ccrud_09810 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ccrud_04895 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ccrud_01945 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ccrud_08150 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D ccrud_09100 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D ccrud_08145 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D ccrud_05450 kgd; alpha-ketoglutarate decarboxylase K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D ccrud_02055 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:ccjz00640]
D ccrud_12430 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ccrud_12435 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ccrud_01945 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ccrud_11390 NADPH:quinone dehydrogenase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D ccrud_03450 acetyl-/propionyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D ccrud_05865 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D ccrud_07440 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D ccrud_07445 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D ccrud_11545 succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D ccrud_11540 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D ccrud_00835 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D ccrud_03445 citrate synthase/methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D ccrud_03435 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D ccrud_03440 methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D ccrud_13265 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
C 00650 Butanoate metabolism [PATH:ccjz00650]
D ccrud_05630 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_10645 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_08145 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D ccrud_01980 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D ccrud_01985 succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D ccrud_01975 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D ccrud_12230 gabD2; succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_04205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_00255 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_02690 acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D ccrud_11575 acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D ccrud_05620 succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D ccrud_10635 succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D ccrud_05625 succinyl-CoA--3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D ccrud_10630 succinyl-CoA--3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D ccrud_13795 acetoacetate-CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D ccrud_06105 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ccrud_06110 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ccrud_12040 diacetyl reductase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:ccjz00660]
D ccrud_06105 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ccrud_06110 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ccrud_11545 succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D ccrud_11540 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D ccrud_06415 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D ccrud_06420 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D ccrud_06145 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:ccjz00562]
D ccrud_08220 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D ccrud_09160 fructose 1,6-bisphosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D ccrud_13545 inositol 1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D ccrud_00855 inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D ccrud_00850 2-keto-myo-inositol dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D ccrud_00845 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D ccrud_00840 5-deoxy-glucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D ccrud_00825 5-dehydro-2-deoxygluconokinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D ccrud_00835 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D ccrud_07660 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:ccjz00190]
D ccrud_07100 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D ccrud_01980 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D ccrud_01985 succinate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D ccrud_01975 succinate dehydrogenase K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D ccrud_09610 menaquinol-cytochrome C reductase K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D ccrud_09605 menaquinol-cytochrome C reductase K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8]
D ccrud_09615 cytochrome C K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8]
D ccrud_07605 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D ccrud_09625 cytochrome-c oxidase K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9]
D ccrud_09620 cytochrome B K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D ccrud_11335 cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D ccrud_09630 cytochrome B K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D ccrud_07595 cytochrome B K02259 COX15; heme a synthase [EC:1.17.99.9]
D ccrud_05540 cytochrome BD ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D ccrud_05535 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D ccrud_05835 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D ccrud_05845 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D ccrud_05840 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D ccrud_05830 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D ccrud_05850 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D ccrud_05815 ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D ccrud_05825 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D ccrud_05820 ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D ccrud_12165 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D ccrud_04535 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D ccrud_12245 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:ccjz00680]
D ccrud_04895 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ccrud_04810 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ccrud_07655 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D ccrud_10585 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D ccrud_12490 class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D ccrud_04985 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D ccrud_06010 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D ccrud_05510 potassium transporter K18277 tmm; trimethylamine monooxygenase [EC:1.14.13.148]
D ccrud_12430 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D ccrud_12435 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ccrud_02815 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D ccrud_02810 hypothetical protein K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D ccrud_02115 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D ccrud_06135 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D ccrud_04080 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D ccrud_11330 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:ccjz00910]
D ccrud_05740 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D ccrud_05735 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D ccrud_05730 nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D ccrud_05720 respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D ccrud_13345 hypothetical protein K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D ccrud_04630 diguanylate cyclase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D ccrud_09095 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D ccrud_09755 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ccrud_09810 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ccrud_00975 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D ccrud_00980 gltD; glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D ccrud_12025 beta-hydroxylase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:ccjz00920]
D ccrud_07955 flavoprotein K00299 ssuE; FMN reductase [EC:1.5.1.38]
D ccrud_12645 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D ccrud_12650 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D ccrud_04165 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D ccrud_08610 exopolyphosphatase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D ccrud_12655 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D ccrud_12660 sulfite reductase K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D ccrud_06825 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D ccrud_03455 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D ccrud_12515 sulfultransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D ccrud_11520 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D ccrud_11515 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D ccrud_03280 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D ccrud_10955 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:ccjz00061]
D ccrud_03450 acetyl-/propionyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D ccrud_09930 acyl carrier protein K02078 acpP; acyl carrier protein
D ccrud_04120 type I polyketide synthase K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-]
D ccrud_11215 3-oxoacyl-ACP synthase K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-]
D ccrud_03540 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ccrud_12890 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ccrud_00430 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ccrud_02105 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D ccrud_10135 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:ccjz00071]
D ccrud_05630 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_10645 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_01485 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D ccrud_02105 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D ccrud_10135 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D ccrud_02795 ferredoxin K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D ccrud_12210 pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D ccrud_12620 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:ccjz00561]
D ccrud_08150 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D ccrud_09100 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_01705 alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D ccrud_13155 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D ccrud_06765 HAD family hydrolase K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D ccrud_09575 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D ccrud_13100 esterase K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122]
D ccrud_00445 acetyltransferase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D ccrud_00450 acetyltransferase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
C 00564 Glycerophospholipid metabolism [PATH:ccjz00564]
D ccrud_06440 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D ccrud_07960 glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D ccrud_09575 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D ccrud_06645 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D ccrud_13245 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D ccrud_08800 CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D ccrud_08070 phosphatidylglycerophosphate synthase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D ccrud_08490 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D ccrud_12380 cardiolipin synthase A K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
D ccrud_08040 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:ccjz00230]
D ccrud_11405 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ccrud_04665 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D ccrud_11650 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D ccrud_11725 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D ccrud_04250 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D ccrud_12465 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D ccrud_11670 phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D ccrud_11680 phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D ccrud_11675 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D ccrud_11645 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D ccrud_03505 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D ccrud_03520 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D ccrud_11710 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D ccrud_11715 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D ccrud_04255 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D ccrud_07995 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D ccrud_00095 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D ccrud_01700 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D ccrud_09935 HAD family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D ccrud_09430 laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D ccrud_12775 nucleoside hydrolase K01239 E3.2.2.1; purine nucleosidase [EC:3.2.2.1]
D ccrud_12150 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D ccrud_03075 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D ccrud_03080 inosine 5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D ccrud_10535 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D ccrud_11255 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D ccrud_03085 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D ccrud_07505 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D ccrud_12050 inosine 5-monophosphate dehydrogenase K26110 guaB1; GMP reductase [EC:1.7.1.7]
D ccrud_07760 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D ccrud_11355 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D ccrud_11340 class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D ccrud_10020 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D ccrud_07990 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D ccrud_04825 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D ccrud_02145 hypothetical protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D ccrud_01605 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D ccrud_12470 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D ccrud_00550 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D ccrud_02835 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D ccrud_08075 HIT family hydrolase K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D ccrud_12645 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D ccrud_12650 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D ccrud_00500 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D ccrud_00495 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D ccrud_00490 urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:ccjz00240]
D ccrud_01850 hypothetical protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D ccrud_07775 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D ccrud_07780 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D ccrud_07790 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D ccrud_07785 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D ccrud_07390 dihydroorotate dehydrogenase (quinone) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D ccrud_12505 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D ccrud_07770 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D ccrud_08810 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D ccrud_10535 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D ccrud_03475 septum formation inhibitor Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D ccrud_06795 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D ccrud_06840 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D ccrud_00095 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D ccrud_01700 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D ccrud_09935 HAD family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D ccrud_03400 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D ccrud_07795 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D ccrud_12845 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D ccrud_11355 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D ccrud_11340 class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D ccrud_03665 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D ccrud_08205 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ccrud_04160 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D ccrud_08555 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D ccrud_13620 malonic semialdehyde reductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:ccjz00250]
D ccrud_09380 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D ccrud_09635 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D ccrud_12830 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D ccrud_07295 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D ccrud_06710 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D ccrud_06715 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D ccrud_12470 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D ccrud_11715 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D ccrud_07790 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D ccrud_12230 gabD2; succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_04205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_00255 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_00975 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D ccrud_00980 gltD; glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D ccrud_09095 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D ccrud_00560 aldehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D ccrud_09755 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ccrud_09810 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ccrud_01850 hypothetical protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D ccrud_07775 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D ccrud_07780 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D ccrud_11140 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D ccrud_11675 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D ccrud_10005 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D ccrud_11650 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:ccjz00260]
D ccrud_01345 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D ccrud_01350 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D ccrud_05705 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D ccrud_05710 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D ccrud_09780 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D ccrud_04895 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ccrud_08150 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D ccrud_09100 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D ccrud_02115 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D ccrud_06135 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D ccrud_04080 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D ccrud_11330 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D ccrud_01945 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ccrud_07635 amino acid oxidase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1]
D ccrud_09300 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D ccrud_13710 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D ccrud_13705 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:ccjz00270]
D ccrud_11520 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D ccrud_11515 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D ccrud_10195 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D ccrud_07315 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D ccrud_05500 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D ccrud_09310 methionine synthase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D ccrud_07745 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D ccrud_12170 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D ccrud_12615 nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D ccrud_09430 laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D ccrud_03660 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D ccrud_01345 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D ccrud_01350 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D ccrud_05705 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D ccrud_03280 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D ccrud_10955 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D ccrud_03285 hypothetical protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D ccrud_09700 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ccrud_06825 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D ccrud_03455 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D ccrud_12515 sulfultransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D ccrud_13265 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ccrud_10585 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D ccrud_06135 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D ccrud_04080 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:ccjz00280]
D ccrud_09700 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ccrud_01945 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ccrud_03450 acetyl-/propionyl-CoA carboxylase subunit alpha K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D ccrud_05865 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D ccrud_07440 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D ccrud_07445 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D ccrud_00835 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_05620 succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D ccrud_10635 succinyl-CoA--3-ketoacid-CoA transferase K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D ccrud_05625 succinyl-CoA--3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D ccrud_10630 succinyl-CoA--3-ketoacid-CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D ccrud_13795 acetoacetate-CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D ccrud_05630 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_10645 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ccjz00290]
D ccrud_09300 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D ccrud_06415 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D ccrud_06420 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D ccrud_06145 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D ccrud_06105 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ccrud_06110 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ccrud_06115 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D ccrud_06090 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D ccrud_09700 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ccrud_12830 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D ccrud_01325 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:ccjz00300]
D ccrud_05705 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D ccrud_01345 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D ccrud_01350 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D ccrud_11935 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D ccrud_08550 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D ccrud_08560 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D ccrud_05340 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D ccrud_05350 succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D ccrud_06695 argD; acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D ccrud_04010 aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D ccrud_05355 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D ccrud_08390 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D ccrud_05700 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D ccrud_09340 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D ccrud_11815 diaminopimelate dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16]
D ccrud_09475 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D ccrud_09470 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:ccjz00310]
D ccrud_01945 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ccrud_01485 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D ccrud_05630 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_10645 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_12230 gabD2; succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_04205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_00255 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:ccjz00220]
D ccrud_06700 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D ccrud_06710 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D ccrud_06715 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D ccrud_00500 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D ccrud_00495 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D ccrud_00490 urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D ccrud_11140 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D ccrud_11675 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D ccrud_09755 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ccrud_09810 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ccrud_09095 glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D ccrud_12830 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D ccrud_06685 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D ccrud_12370 acetyltransferase K22476 K22476; N-acetylglutamate synthase [EC:2.3.1.1]
D ccrud_06690 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D ccrud_06680 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D ccrud_06695 argD; acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:ccjz00330]
D ccrud_12170 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_06390 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D ccrud_02155 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D ccrud_00560 aldehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D ccrud_10475 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D ccrud_10465 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00340 Histidine metabolism [PATH:ccjz00340]
D ccrud_07300 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D ccrud_07305 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D ccrud_09150 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D ccrud_09165 bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D ccrud_09170 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D ccrud_09155 imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D ccrud_09185 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D ccrud_01160 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ccrud_09190 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ccrud_03875 histidinol-phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D ccrud_09195 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:ccjz00350]
D ccrud_01160 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ccrud_09190 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ccrud_00470 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D ccrud_00480 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D ccrud_12620 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D ccrud_12230 gabD2; succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_04205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_00255 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_11060 alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D ccrud_13645 cupin K00450 E1.13.11.4; gentisate 1,2-dioxygenase [EC:1.13.11.4]
D ccrud_13635 maleylpyruvate isomerase K16163 K16163; maleylpyruvate isomerase [EC:5.2.1.4]
D ccrud_13640 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase K16164 K16164; acylpyruvate hydrolase [EC:3.7.1.5]
C 00360 Phenylalanine metabolism [PATH:ccjz00360]
D ccrud_01160 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ccrud_09190 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ccrud_11060 alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D ccrud_13610 amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D ccrud_06390 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D ccrud_02795 ferredoxin K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D ccrud_12210 pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
C 00380 Tryptophan metabolism [PATH:ccjz00380]
D ccrud_01945 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ccrud_01485 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D ccrud_05630 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_10645 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_06390 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D ccrud_01360 catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ccjz00400]
D ccrud_04870 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D ccrud_09550 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D ccrud_07840 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D ccrud_02205 type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D ccrud_02200 4-hydroxyphenylpyruvate dioxygenase K26400 quiC1; 3-dehydroshikimate dehydratase [EC:4.2.1.118]
D ccrud_02210 shikimate dehydrogenase K25901 qsuD; quinate/shikimate dehydrogenase (NAD+) [EC:1.1.1.24]
D ccrud_07845 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D ccrud_03720 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D ccrud_07850 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D ccrud_13685 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D ccrud_13690 anthranilate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D ccrud_13695 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D ccrud_09165 bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D ccrud_09140 indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D ccrud_13700 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D ccrud_13710 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D ccrud_13705 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D ccrud_04215 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D ccrud_01190 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D ccrud_13195 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D ccrud_01160 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ccrud_09190 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:ccjz00410]
D ccrud_00710 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D ccrud_10920 hypothetical protein K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_00630 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D ccrud_12105 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D ccrud_00835 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:ccjz00430]
D ccrud_04735 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D ccrud_10920 hypothetical protein K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]
D ccrud_12435 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D ccrud_12430 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:ccjz00450]
D ccrud_10955 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D ccrud_10195 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D ccrud_07315 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D ccrud_05500 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D ccrud_09310 methionine synthase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D ccrud_07555 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D ccrud_03430 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D ccrud_13905 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D ccrud_12645 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D ccrud_12650 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D ccrud_04410 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:ccjz00460]
D ccrud_01650 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D ccrud_04735 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D ccrud_09380 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D ccrud_04895 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:ccjz00470]
D ccrud_03000 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D ccrud_06445 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D ccrud_11140 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D ccrud_11675 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D ccrud_11270 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D ccrud_09460 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D ccrud_08390 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D ccrud_05700 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D ccrud_09340 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D ccrud_02370 2,5-dioxovalerate dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
D ccrud_13610 amino acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:ccjz00480]
D ccrud_04735 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D ccrud_04935 hypothetical protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D ccrud_12350 carboxylate--amine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D ccrud_09705 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D ccrud_10780 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D ccrud_03300 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D ccrud_07035 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D ccrud_07620 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D ccrud_11685 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D ccrud_12170 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:ccjz00515]
D ccrud_04395 dolichyl-phosphate-mannose--protein mannosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:ccjz00514]
D ccrud_04395 dolichyl-phosphate-mannose--protein mannosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:ccjz00542]
D ccrud_05805 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ccjz00541]
D ccrud_04355 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ccrud_01950 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D ccrud_01675 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ccrud_02865 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ccrud_08280 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D ccrud_13145 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D ccrud_02850 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D ccrud_12840 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D ccrud_01715 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D ccrud_01725 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D ccrud_01720 dTDP-4-dehydrorhamnose reductase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D ccrud_03645 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D ccrud_03635 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D ccrud_03410 phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D ccrud_04670 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D ccrud_11890 oxidoreductase K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
C 00550 Peptidoglycan biosynthesis [PATH:ccjz00550]
D ccrud_11500 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D ccrud_02095 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D ccrud_09445 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D ccrud_09460 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D ccrud_09475 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D ccrud_06445 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D ccrud_09470 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D ccrud_10070 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D ccrud_07375 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ccrud_13130 phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ccrud_09465 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D ccrud_09450 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D ccrud_09480 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D ccrud_00160 penicillin-binding protein K05364 pbpA; penicillin-binding protein A
D ccrud_03380 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ccrud_12160 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D ccrud_01310 UDP-N-acetylmuramyl peptide synthase K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D ccrud_01305 glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:ccjz00552]
D ccrud_07375 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ccrud_13130 phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ccrud_05805 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:ccjz00543]
D ccrud_05805 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D ccrud_11520 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:ccjz00730]
D ccrud_07090 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D ccrud_05915 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ccrud_05150 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ccrud_08875 glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19]
D ccrud_08190 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D ccrud_08885 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D ccrud_07095 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D ccrud_08870 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D ccrud_06455 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D ccrud_03715 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D ccrud_11040 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D ccrud_02835 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:ccjz00740]
D ccrud_07705 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D ccrud_07715 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D ccrud_07700 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D ccrud_07710 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D ccrud_08585 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D ccrud_07955 flavoprotein K00299 ssuE; FMN reductase [EC:1.5.1.38]
D ccrud_07095 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
C 00750 Vitamin B6 metabolism [PATH:ccjz00750]
D ccrud_04515 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D ccrud_13850 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D ccrud_04080 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D ccrud_09780 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D ccrud_03845 pyridoxal biosynthesis lyase PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D ccrud_03850 glutamine amidotransferase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:ccjz00760]
D ccrud_05160 quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D ccrud_05155 nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D ccrud_11310 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D ccrud_00095 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D ccrud_01700 bifunctional metallophosphatase/5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D ccrud_09935 HAD family hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D ccrud_10455 nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D ccrud_03790 NTP pyrophosphohydrolase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D ccrud_11375 NAD(+) synthase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D ccrud_08485 competence protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D ccrud_11175 nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D ccrud_03245 NAD-dependent protein deacylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D ccrud_06775 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D ccrud_12230 gabD2; succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_04205 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D ccrud_00255 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:ccjz00770]
D ccrud_06105 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D ccrud_06110 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D ccrud_06115 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D ccrud_06090 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D ccrud_00635 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D ccrud_05255 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D ccrud_00630 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D ccrud_12105 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D ccrud_04890 type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D ccrud_07750 phosphopantothenoylcysteine decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D ccrud_06485 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D ccrud_06550 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D ccrud_11195 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D ccrud_09700 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ccrud_00710 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:ccjz00780]
D ccrud_03540 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ccrud_12890 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ccrud_00430 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ccrud_00365 biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6]
D ccrud_03495 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:ccjz00785]
D ccrud_09720 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D ccrud_09725 lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D ccrud_05185 lipoate--protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D ccrud_01945 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ccrud_09895 pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D ccrud_09715 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D ccrud_05450 kgd; alpha-ketoglutarate decarboxylase K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
C 00790 Folate biosynthesis [PATH:ccjz00790]
D ccrud_12140 GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D ccrud_11040 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D ccrud_09965 phosphodiesterase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D ccrud_12130 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D ccrud_12125 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D ccrud_05365 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D ccrud_12135 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D ccrud_14620 dihydropteroate synthase K18824 sul2; dihydropteroate synthase type 2 [EC:2.5.1.15]
D ccrud_04155 diacylglycerol kinase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D ccrud_14595 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D ccrud_10560 dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D ccrud_07705 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D ccrud_04900 aminodeoxychorismate synthase, component I K13950 pabAB; para-aminobenzoate synthetase [EC:2.6.1.85]
D ccrud_11630 4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D ccrud_02415 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D ccrud_05775 cyclic pyranopterin phosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D ccrud_01125 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D ccrud_01115 molybdopterin converting factor K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D ccrud_01130 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D ccrud_04360 molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D ccrud_05770 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
C 00670 One carbon pool by folate [PATH:ccjz00670]
D ccrud_04155 diacylglycerol kinase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D ccrud_14595 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D ccrud_03260 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D ccrud_04895 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D ccrud_04250 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D ccrud_04255 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D ccrud_07730 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D ccrud_07315 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D ccrud_04160 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D ccrud_08555 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D ccrud_02055 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D ccrud_09515 methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D ccrud_04350 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:ccjz00860]
D ccrud_01245 tRNA glutamyl-Q synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ccrud_06180 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ccrud_02175 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D ccrud_02275 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D ccrud_02245 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D ccrud_02180 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D ccrud_02265 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D ccrud_02270 protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D ccrud_07480 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D ccrud_08175 hypothetical protein K00435 hemQ; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5]
D ccrud_02235 bifunctional uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D ccrud_08685 uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D ccrud_07605 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D ccrud_07595 cytochrome B K02259 COX15; heme a synthase [EC:1.17.99.9]
D ccrud_12640 hypothetical protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D ccrud_07190 hypothetical protein K02229 cobG; precorrin-3B synthase [EC:1.14.13.83]
D ccrud_07195 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D ccrud_11505 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D ccrud_09650 adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D ccrud_09660 adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D ccrud_09655 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D ccrud_09855 bifunctional RNase H/acid phosphatase K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
D ccrud_05095 magnesium chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
D ccrud_08680 magnesium chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ccjz00130]
D ccrud_02450 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D ccrud_06175 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
D ccrud_02430 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D ccrud_02425 O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D ccrud_02360 O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D ccrud_02410 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D ccrud_07040 thioesterase K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D ccrud_02350 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D ccrud_06580 NAD(P)-dependent oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:ccjz00900]
D ccrud_08190 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D ccrud_08770 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D ccrud_11985 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D ccrud_04505 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D ccrud_11980 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D ccrud_08760 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D ccrud_05015 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D ccrud_05630 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_10645 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_10175 isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D ccrud_03170 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D ccrud_09520 geranylgeranyl pyrophosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D ccrud_04875 isoprenyl transferase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D ccrud_10070 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:ccjz00906]
D ccrud_10810 phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D ccrud_07610 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:ccjz00523]
D ccrud_01715 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D ccrud_01725 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D ccrud_01720 dTDP-4-dehydrorhamnose reductase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D ccrud_06175 isochorismate synthase K02361 entC; isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D ccrud_01725 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:ccjz00946]
D ccrud_01650 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:ccjz00332]
D ccrud_10475 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D ccrud_10465 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:ccjz00261]
D ccrud_12645 sulfate adenylyltransferase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D ccrud_12650 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D ccrud_01345 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D ccrud_01350 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D ccrud_11935 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D ccrud_08550 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D ccrud_08560 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:ccjz00521]
D ccrud_11940 hypothetical protein K25026 glk; glucokinase [EC:2.7.1.2]
D ccrud_09580 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D ccrud_11405 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D ccrud_13545 inositol 1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D ccrud_08220 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D ccrud_09160 fructose 1,6-bisphosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D ccrud_00855 inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D ccrud_01715 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D ccrud_01725 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D ccrud_01720 dTDP-4-dehydrorhamnose reductase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D ccrud_11940 hypothetical protein K25026 glk; glucokinase [EC:2.7.1.2]
D ccrud_09580 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:ccjz00525]
D ccrud_01715 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D ccrud_01725 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:ccjz00401]
D ccrud_01190 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D ccrud_01160 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ccrud_09190 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D ccrud_13685 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D ccrud_13690 anthranilate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D ccrud_03540 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ccrud_12890 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ccrud_00430 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics [PATH:ccjz00998]
D ccrud_09930 acyl carrier protein K02078 acpP; acyl carrier protein
D ccrud_09345 2,3-diaminopropionate biosynthesis protein SbnA K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140]
C 00999 Biosynthesis of various plant secondary metabolites [PATH:ccjz00999]
D ccrud_07745 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D ccrud_01650 beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
D ccrud_09345 2,3-diaminopropionate biosynthesis protein SbnA K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:ccjz00362]
D ccrud_10700 benzoate 1,2-dioxygenase large subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-]
D ccrud_10705 benzoate 1,2-dioxygenase small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D ccrud_10710 benzene 1,2-dioxygenase K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D ccrud_10715 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-]
D ccrud_10695 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D ccrud_10690 chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D ccrud_10685 muconolactone delta-isomerase K03464 catC; muconolactone D-isomerase [EC:5.3.3.4]
D ccrud_10650 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D ccrud_09125 glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D ccrud_05575 hydroxyquinol 1,2-dioxygenase K04098 chqB; hydroxyquinol 1,2-dioxygenase [EC:1.13.11.37]
D ccrud_05570 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32]
D ccrud_10670 protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D ccrud_10675 protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
D ccrud_00965 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D ccrud_08910 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D ccrud_10665 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D ccrud_06365 carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D ccrud_10660 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D ccrud_05195 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D ccrud_13660 3-hydroxybenzoate 6-hydroxylase K22270 nagX; 3-hydroxybenzoate 6-monooxygenase [EC:1.14.13.24]
D ccrud_01485 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D ccrud_05630 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_10645 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:ccjz00627]
D ccrud_06390 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D ccrud_09010 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D ccrud_12070 phenol 2-monooxygenase K03380 E1.14.13.7; phenol 2-monooxygenase (NADPH) [EC:1.14.13.7]
D ccrud_10600 Rieske (2Fe-2S) protein K03862 vanA; vanillate monooxygenase [EC:1.14.13.82]
D ccrud_10605 flavodoxin K03863 vanB; vanillate monooxygenase ferredoxin subunit
C 00364 Fluorobenzoate degradation [PATH:ccjz00364]
D ccrud_10700 benzoate 1,2-dioxygenase large subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-]
D ccrud_10705 benzoate 1,2-dioxygenase small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D ccrud_10710 benzene 1,2-dioxygenase K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D ccrud_10715 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-]
D ccrud_10695 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D ccrud_10690 chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D ccrud_05570 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32]
C 00625 Chloroalkane and chloroalkene degradation [PATH:ccjz00625]
D ccrud_12620 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D ccrud_02785 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D ccrud_11055 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:ccjz00361]
D ccrud_10695 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D ccrud_05570 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32]
D ccrud_05575 hydroxyquinol 1,2-dioxygenase K04098 chqB; hydroxyquinol 1,2-dioxygenase [EC:1.13.11.37]
D ccrud_10690 chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D ccrud_09125 glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00623 Toluene degradation [PATH:ccjz00623]
D ccrud_12070 phenol 2-monooxygenase K03380 E1.14.13.7; phenol 2-monooxygenase (NADPH) [EC:1.14.13.7]
D ccrud_11060 alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D ccrud_10695 catechol 1,2-dioxygenase K03381 catA; catechol 1,2-dioxygenase [EC:1.13.11.1]
D ccrud_10690 chloromuconate cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1]
D ccrud_05570 maleylacetate reductase K00217 E1.3.1.32; maleylacetate reductase [EC:1.3.1.32]
C 00622 Xylene degradation [PATH:ccjz00622]
D ccrud_11060 alcohol dehydrogenase K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D ccrud_10700 benzoate 1,2-dioxygenase large subunit K05549 benA-xylX; benzoate/toluate 1,2-dioxygenase subunit alpha [EC:1.14.12.10 1.14.12.-]
D ccrud_10705 benzoate 1,2-dioxygenase small subunit K05550 benB-xylY; benzoate/toluate 1,2-dioxygenase subunit beta [EC:1.14.12.10 1.14.12.-]
D ccrud_10710 benzene 1,2-dioxygenase K05784 benC-xylZ; benzoate/toluate 1,2-dioxygenase reductase component [EC:1.18.1.-]
D ccrud_10715 benD; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase K05783 benD-xylL; dihydroxycyclohexadiene carboxylate dehydrogenase [EC:1.3.1.25 1.3.1.-]
D ccrud_09125 glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00633 Nitrotoluene degradation [PATH:ccjz00633]
D ccrud_07025 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:ccjz00643]
D ccrud_00470 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D ccrud_00480 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D ccrud_06390 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D ccrud_09125 glyoxalase K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00791 Atrazine degradation
D ccrud_00500 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D ccrud_00495 urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5]
D ccrud_00490 urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:ccjz00626]
D ccrud_12620 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
D ccrud_10670 protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
D ccrud_10675 protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
C 00365 Furfural degradation
C 00984 Steroid degradation
D ccrud_11780 FAD-binding protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
D ccrud_11775 23S rRNA methyltransferase K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:ccjz03020]
D ccrud_02550 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D ccrud_02555 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D ccrud_02900 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D ccrud_07755 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D ccrud_04020 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:ccjz03010]
D ccrud_06540 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D ccrud_08820 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D ccrud_02635 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D ccrud_02895 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D ccrud_02770 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D ccrud_13495 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D ccrud_02580 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D ccrud_02755 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D ccrud_02965 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D ccrud_02600 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D ccrud_02890 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D ccrud_02575 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D ccrud_02885 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D ccrud_04280 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D ccrud_08575 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D ccrud_08955 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D ccrud_02650 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D ccrud_04275 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D ccrud_02625 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D ccrud_10410 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D ccrud_02505 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D ccrud_02620 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D ccrud_02605 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D ccrud_02610 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D ccrud_02670 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D ccrud_02760 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D ccrud_02530 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D ccrud_13485 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D ccrud_02525 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D ccrud_02500 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D ccrud_02960 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D ccrud_02660 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D ccrud_02780 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D ccrud_02640 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D ccrud_02905 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D ccrud_02765 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D ccrud_08865 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D ccrud_06620 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D ccrud_10510 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D ccrud_02630 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D ccrud_02615 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D ccrud_02665 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D ccrud_04650 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D ccrud_10505 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D ccrud_04290 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D ccrud_02645 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D ccrud_02775 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D ccrud_04305 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D ccrud_04310 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D ccrud_04285 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D ccrud_13950 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D ccrud_06615 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D ccrud_11370 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D ccrud_11455 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_03995 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_13440 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_00375 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_06745 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_11495 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_06750 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_11450 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_00380 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_04000 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_11490 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_13435 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_00385 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_11485 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_13430 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_04005 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_06755 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_11445 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:ccjz00970]
D ccrud_00100 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ccrud_00080 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ccrud_11395 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ccrud_00110 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ccrud_05685 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ccrud_01170 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ccrud_11035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ccrud_01185 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ccrud_04140 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ccrud_09970 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D ccrud_09975 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D ccrud_11535 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D ccrud_11550 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D ccrud_08110 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D ccrud_06200 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D ccrud_06210 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D ccrud_06205 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ccrud_11555 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ccrud_06220 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ccrud_06215 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ccrud_10760 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ccrud_08100 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ccrud_12850 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ccrud_08115 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ccrud_08125 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ccrud_11045 tRNA-His K14226 tRNA-His; tRNA His
D ccrud_00105 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ccrud_00075 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ccrud_07415 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ccrud_11240 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ccrud_06525 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ccrud_00185 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ccrud_04830 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ccrud_07420 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ccrud_11115 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D ccrud_11120 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D ccrud_11570 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D ccrud_03855 tRNA-Met K14230 tRNA-Met; tRNA Met
D ccrud_09960 tRNA-Met K14230 tRNA-Met; tRNA Met
D ccrud_02480 tRNA-Met K14230 tRNA-Met; tRNA Met
D ccrud_03960 tRNA-Met K14230 tRNA-Met; tRNA Met
D ccrud_11530 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D ccrud_10750 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D ccrud_01430 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D ccrud_06945 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D ccrud_01165 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D ccrud_01090 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D ccrud_01255 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D ccrud_01210 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D ccrud_01615 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D ccrud_02470 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D ccrud_11830 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D ccrud_02475 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D ccrud_02485 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D ccrud_02465 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D ccrud_08105 tRNA-Val K14237 tRNA-Val; tRNA Val
D ccrud_08130 tRNA-Val K14237 tRNA-Val; tRNA Val
D ccrud_08120 tRNA-Val K14237 tRNA-Val; tRNA Val
D ccrud_09885 tRNA-Val K14237 tRNA-Val; tRNA Val
D ccrud_01245 tRNA glutamyl-Q synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ccrud_06180 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ccrud_05995 aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D ccrud_06050 aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D ccrud_05990 asparaginyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D ccrud_07900 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D ccrud_07915 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D ccrud_10045 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D ccrud_08080 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D ccrud_13170 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D ccrud_11910 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D ccrud_04410 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D ccrud_07730 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D ccrud_10565 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D ccrud_13625 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D ccrud_09405 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D ccrud_12100 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D ccrud_05695 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D ccrud_08665 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D ccrud_07965 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D ccrud_06655 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D ccrud_06660 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D ccrud_06740 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D ccrud_03365 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:ccjz03060]
D ccrud_02830 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D ccrud_02490 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D ccrud_07650 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D ccrud_08010 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D ccrud_08005 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D ccrud_08015 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D ccrud_13385 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ccrud_13940 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ccrud_03695 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ccrud_06960 accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ccrud_08975 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D ccrud_01260 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D ccrud_08995 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D ccrud_07235 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D ccrud_13760 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D ccrud_05415 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D ccrud_07230 twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D ccrud_08860 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D ccrud_09360 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:ccjz04122]
D ccrud_05915 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ccrud_05150 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ccrud_06825 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D ccrud_03455 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D ccrud_12515 sulfultransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D ccrud_05955 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D ccrud_01115 molybdopterin converting factor K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D ccrud_05775 cyclic pyranopterin phosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D ccrud_01145 molybdopterin synthase sulfur carrier subunit K03636 moaD; sulfur-carrier protein
D ccrud_01110 molybdopterin biosynthesis protein MoeB K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D ccrud_08890 thiazole biosynthesis adenylyltransferase ThiF K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D ccrud_01125 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D ccrud_08880 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
D ccrud_07265 proteasome ATPase K13527 mpa; proteasome-associated ATPase
C 03018 RNA degradation [PATH:ccjz03018]
D ccrud_10515 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D ccrud_04810 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ccrud_08570 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D ccrud_05565 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D ccrud_04415 recombinase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D ccrud_05785 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D ccrud_08545 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D ccrud_12605 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D ccrud_03050 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ccrud_12255 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ccrud_04535 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D ccrud_12245 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D ccrud_13880 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:ccjz03030]
D ccrud_05970 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_06160 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_01315 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_09245 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_14030 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_09315 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ccrud_01275 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ccrud_01610 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ccrud_10425 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ccrud_00015 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ccrud_13985 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ccrud_13480 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D ccrud_09990 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D ccrud_13490 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_14045 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_11025 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_09855 bifunctional RNase H/acid phosphatase K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
D ccrud_08855 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D ccrud_06530 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D ccrud_05975 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:ccjz03410]
D ccrud_01510 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D ccrud_06460 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D ccrud_12030 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D ccrud_00655 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D ccrud_09065 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D ccrud_13555 DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D ccrud_04175 endonuclease K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D ccrud_00760 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D ccrud_12795 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D ccrud_03335 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D ccrud_12375 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D ccrud_06530 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D ccrud_05975 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:ccjz03420]
D ccrud_04755 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D ccrud_06600 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D ccrud_06565 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D ccrud_07690 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D ccrud_03780 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ccrud_03795 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ccrud_04220 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ccrud_06320 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ccrud_06530 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D ccrud_05975 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D ccrud_04020 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03430 Mismatch repair [PATH:ccjz03430]
D ccrud_03780 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ccrud_03795 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ccrud_04220 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ccrud_06320 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ccrud_05010 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D ccrud_05005 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D ccrud_13490 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_14045 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_11025 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_09315 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ccrud_00015 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ccrud_13985 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ccrud_01275 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ccrud_10425 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ccrud_01610 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ccrud_05970 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_06160 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_01315 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_09245 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_14030 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_05975 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:ccjz03440]
D ccrud_13490 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_14045 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_11025 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_00020 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D ccrud_10075 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D ccrud_01285 recombination protein RecR K06187 recR; recombination protein RecR
D ccrud_08450 recombinase RecA K03553 recA; recombination protein RecA
D ccrud_06530 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D ccrud_08025 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D ccrud_08020 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D ccrud_08030 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D ccrud_06470 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D ccrud_14220 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D ccrud_09315 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ccrud_00015 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ccrud_13985 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ccrud_01275 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ccrud_10425 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ccrud_01610 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ccrud_05970 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_06160 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_01315 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_09245 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_14030 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_07740 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:ccjz03250]
D ccrud_00135 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:ccjz02010]
D ccrud_01140 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D ccrud_01135 molybdenum ABC transporter permease K02018 modB; molybdate transport system permease protein
D ccrud_02230 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D ccrud_00905 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D ccrud_02225 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D ccrud_00900 ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D ccrud_00910 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D ccrud_02220 Fe3+/spermidine/putrescine ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D ccrud_03585 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D ccrud_10840 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D ccrud_01150 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D ccrud_03580 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein
D ccrud_03570 ABC transporter permease K10237 thuF; trehalose/maltose transport system permease protein
D ccrud_03565 sugar ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein
D ccrud_06030 D-ribose ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D ccrud_06025 sugar ABC transporter permease K10440 rbsC; ribose transport system permease protein
D ccrud_06020 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D ccrud_06035 D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D ccrud_06635 ABC transporter substrate-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D ccrud_06625 glycerol-3-phosphate ABC transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D ccrud_06630 glycerol-3-phosphate ABC transporter permease K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D ccrud_06640 sn-glycerol-3-phosphate ABC transporter ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D ccrud_11605 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D ccrud_11600 phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D ccrud_11595 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D ccrud_11590 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D ccrud_07080 ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D ccrud_10230 phosphate starvation-inducible protein PhoH K02044 phnD; phosphonate transport system substrate-binding protein
D ccrud_07065 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D ccrud_07070 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D ccrud_10220 phosphonate ABC transporter permease K02042 phnE; phosphonate transport system permease protein
D ccrud_07075 phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D ccrud_10225 phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D ccrud_08430 glutamate-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D ccrud_08435 glutamate ABC transporter permease K10006 gluC; glutamate transport system permease protein
D ccrud_08440 glutamate ABC transporter permease K10007 gluD; glutamate transport system permease protein
D ccrud_08425 glutamate ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D ccrud_03220 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D ccrud_12730 metal ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D ccrud_03210 methionine ABC transporter ATP-binding protein K02072 metI; D-methionine transport system permease protein
D ccrud_12720 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein
D ccrud_03215 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D ccrud_12725 ABC transporter K02071 metN; D-methionine transport system ATP-binding protein
D ccrud_04600 urea ABC transporter substrate-binding protein K11959 urtA; urea transport system substrate-binding protein
D ccrud_04605 urea ABC transporter permease subunit UrtB K11960 urtB; urea transport system permease protein
D ccrud_04610 urea ABC transporter permease subunit UrtC K11961 urtC; urea transport system permease protein
D ccrud_04615 urea ABC transporter ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein
D ccrud_04620 urea ABC transporter ATP-binding subunit UrtE K11963 urtE; urea transport system ATP-binding protein
D ccrud_08645 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D ccrud_10570 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D ccrud_08650 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D ccrud_08655 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D ccrud_08660 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D ccrud_03325 ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D ccrud_03320 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein
D ccrud_03315 ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein
D ccrud_03310 iron dicitrate ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D ccrud_08460 biotin biosynthesis protein BioY K03523 bioY; biotin transport system substrate-specific component
D ccrud_08470 cobalt ABC transporter permease K16783 bioN; biotin transport system permease protein
D ccrud_08465 cobalt ABC transporter ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D ccrud_02735 cobalt ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein
D ccrud_05210 ABC transporter K16785 ecfT; energy-coupling factor transport system permease protein
D ccrud_12745 ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein
D ccrud_08965 ABC transporter permease K11051 cylB; multidrug/hemolysin transport system permease protein
D ccrud_08970 multidrug ABC transporter ATP-binding protein K11050 cylA; multidrug/hemolysin transport system ATP-binding protein
D ccrud_01070 sugar ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D ccrud_01065 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D ccrud_08750 ABC transporter permease K09813 hrtB; hemin transport system permease protein
D ccrud_08755 ABC transporter ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-]
D ccrud_03895 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D ccrud_03890 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D ccrud_04765 multidrug ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ccrud_04760 multidrug ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ccrud_05525 thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D ccrud_05530 ABC transporter permease K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D ccrud_06350 hypothetical protein K18230 tylC; macrolide transport system ATP-binding/permease protein
D ccrud_09370 ABC transporter ATP-binding protein K18230 tylC; macrolide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:ccjz02060]
D ccrud_08340 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D ccrud_08360 serine kinase K02784 ptsH; phosphocarrier protein HPr
D ccrud_11915 PTS beta-glucoside transporter subunit EIIBCA K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D ccrud_12205 PTS beta-glucoside transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D ccrud_12825 PTS beta-glucoside transporter subunit EIIBCA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D ccrud_06545 PTS beta-glucoside transporter subunit EIIBCA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D ccrud_10015 PTS mannose transporter subunit IIA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D ccrud_13720 PTS sugar transporter K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D ccrud_13715 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D ccrud_08355 PTS lactose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D ccrud_08335 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D ccrud_08350 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:ccjz03070]
D ccrud_08010 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D ccrud_08005 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D ccrud_02490 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D ccrud_07650 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D ccrud_02830 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D ccrud_08015 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D ccrud_13385 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ccrud_13940 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ccrud_03695 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ccrud_06960 accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ccrud_08995 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D ccrud_08975 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D ccrud_07235 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D ccrud_13760 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D ccrud_05415 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D ccrud_07230 twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:ccjz02020]
D ccrud_11040 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D ccrud_09965 phosphodiesterase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D ccrud_02120 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D ccrud_02125 DNA-binding response regulator K07776 regX3; two-component system, OmpR family, response regulator RegX3
D ccrud_11605 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D ccrud_14630 peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D ccrud_01785 transporter K07793 tctA; putative tricarboxylic transport membrane protein
D ccrud_08520 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein
D ccrud_12685 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein
D ccrud_08525 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein
D ccrud_12690 Tricarboxylate transport protein TctB K07794 tctB; putative tricarboxylic transport membrane protein
D ccrud_08530 tricarboxylic transporter K07795 tctC; putative tricarboxylic transport membrane protein
D ccrud_12695 tricarboxylic transporter K07795 tctC; putative tricarboxylic transport membrane protein
D ccrud_07595 cytochrome B K02259 COX15; heme a synthase [EC:1.17.99.9]
D ccrud_04320 two-component sensor histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D ccrud_04325 serine protease K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D ccrud_03675 two-component sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D ccrud_03670 DNA-binding response regulator K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D ccrud_00005 chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein
D ccrud_04260 citrate lyase subunit beta K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D ccrud_13585 malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D ccrud_05735 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D ccrud_05730 nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D ccrud_05720 respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D ccrud_05725 nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D ccrud_04695 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D ccrud_04700 DNA-binding response regulator K07693 desR; two-component system, NarL family, response regulator DesR
D ccrud_01550 ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D ccrud_01555 hypothetical protein K12510 tadB; tight adherence protein B
D ccrud_08980 glnD; [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D ccrud_08985 transcriptional regulator K04751 glnB; nitrogen regulatory protein P-II 1
D ccrud_09755 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ccrud_09810 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ccrud_05640 short-chain fatty acid transporter K02106 atoE; short-chain fatty acids transporter
D ccrud_05630 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_10645 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_04970 hypothetical protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D ccrud_12915 PAS domain-containing sensor histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D ccrud_01500 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D ccrud_11140 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D ccrud_05540 cytochrome BD ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D ccrud_05535 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D ccrud_01830 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D ccrud_09875 protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:ccjz02024]
D ccrud_13685 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D ccrud_13690 anthranilate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D ccrud_04870 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D ccrud_09550 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D ccrud_11005 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D ccrud_10995 hypothetical protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D ccrud_11000 hypothetical protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D ccrud_10990 spermidine/putrescine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D ccrud_01320 hypothetical protein K20276 bapA; large repetitive protein
D ccrud_02105 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D ccrud_10135 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D ccrud_01500 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D ccrud_07715 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D ccrud_05170 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D ccrud_08645 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D ccrud_10570 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D ccrud_08650 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D ccrud_08655 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D ccrud_08660 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D ccrud_11955 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ccrud_08000 peptide ABC transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ccrud_12935 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ccrud_12940 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ccrud_10275 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ccrud_10910 ABC transporter substrate binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ccrud_11960 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D ccrud_12945 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D ccrud_10905 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D ccrud_12950 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D ccrud_10285 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D ccrud_10900 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D ccrud_11965 ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ccrud_12955 glutathione ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ccrud_10290 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ccrud_10895 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ccrud_11970 ABC transporter K02032 ddpF; peptide/nickel transport system ATP-binding protein
D ccrud_13385 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ccrud_13940 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ccrud_02490 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D ccrud_07650 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D ccrud_02830 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D ccrud_08015 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D ccrud_03695 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ccrud_06960 accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ccrud_08995 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D ccrud_08975 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D ccrud_06030 D-ribose ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
C 02040 Flagellar assembly
D ccrud_08230 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D ccrud_04810 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:ccjz04980]
D ccrud_11505 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D ccrud_07435 ATPase/protein kinase K07588 MMAA; GTPase [EC:3.6.5.-]
D ccrud_07440 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D ccrud_07445 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D ccrud_07315 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:ccjz01501]
D ccrud_12970 beta-N-acetylglucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D ccrud_08645 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D ccrud_10570 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D ccrud_08650 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D ccrud_08655 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D ccrud_08660 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D ccrud_09480 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:ccjz01502]
D ccrud_06445 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D ccrud_03000 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D ccrud_09470 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D ccrud_09465 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D ccrud_09450 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ccjz01503]
D ccrud_13915 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ccrud_14630 peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D ccrud_00135 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:ccjz01000]
C 01001 Protein kinases [BR:ccjz01001]
D ccrud_12425 serine/threonine protein kinase K14949 pknG; serine/threonine-protein kinase PknG [EC:2.7.11.1]
D ccrud_00150 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D ccrud_00155 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D ccrud_09535 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D ccrud_05925 HipA-like protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D ccrud_01825 chromosome partitioning protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D ccrud_02120 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D ccrud_04320 two-component sensor histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D ccrud_03675 two-component sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D ccrud_11735 two-component sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ccrud_04695 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D ccrud_00345 histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D ccrud_12915 PAS domain-containing sensor histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:ccjz01009]
D ccrud_03660 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D ccrud_00545 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
D ccrud_00170 protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D ccrud_11330 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:ccjz01002]
D ccrud_09360 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D ccrud_07860 signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D ccrud_03085 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D ccrud_07505 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D ccrud_09590 hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D ccrud_07485 hydrolase K21473 ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-]
D ccrud_11650 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D ccrud_00975 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D ccrud_10005 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D ccrud_09635 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D ccrud_13215 class C sortase K07284 srtA; sortase A [EC:3.4.22.70]
D ccrud_13230 class C sortase K07284 srtA; sortase A [EC:3.4.22.70]
D ccrud_13380 class E sortase K07284 srtA; sortase A [EC:3.4.22.70]
D ccrud_13205 CAAX protease K07052 K07052; CAAX protease family protein
D ccrud_10780 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D ccrud_10155 peptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D ccrud_00805 peptidase M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D ccrud_09705 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D ccrud_05355 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D ccrud_12305 dipeptidase K23980 tpdA; cysteinylglycine-S-conjugate dipeptidase [EC:3.4.13.23]
D ccrud_02840 type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D ccrud_08730 type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D ccrud_12145 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D ccrud_00815 hypothetical protein K24131 prsW; protease PrsW [EC:3.4.-.-]
D ccrud_14630 peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D ccrud_04325 serine protease K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D ccrud_02930 type VII secretion-associated serine protease mycosin K14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-]
D ccrud_01755 prolyl oligopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D ccrud_11705 oligopeptidase B K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D ccrud_03380 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ccrud_12160 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D ccrud_10735 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D ccrud_10740 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D ccrud_03815 signal protein PDZ K07177 K07177; Lon-like protease
D ccrud_08325 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D ccrud_08860 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D ccrud_02420 peptidase K05995 pepE; dipeptidase E [EC:3.4.13.21]
D ccrud_04735 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
C 01003 Glycosyltransferases [BR:ccjz01003]
D ccrud_07170 polyprenol monophosphomannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D ccrud_04395 dolichyl-phosphate-mannose--protein mannosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D ccrud_08060 alpha-(1-2)-phosphatidylinositol mannosyltransferase K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]
D ccrud_09585 alpha-(1-2)-phosphatidylinositol mannosyltransferase K13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346]
D ccrud_02440 alpha-mannosyltransferase K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-]
D ccrud_05390 glycosyl transferase family 1 K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D ccrud_05805 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D ccrud_09560 hypothetical protein K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D ccrud_09525 alpha 1,6 mannopyranosyltransferase K14337 mptA; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D ccrud_07580 alpha 1,6 mannopyranosyltransferase K14339 mptB; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D ccrud_01000 arabinosyltransferase K11387 embC; arabinosyltransferase C [EC:2.4.2.-]
D ccrud_01005 hypothetical protein K13686 aftA; galactan 5-O-arabinofuranosyltransferase [EC:2.4.2.46]
D ccrud_13105 hypothetical protein K13687 aftB; arabinofuranosyltransferase [EC:2.4.2.-]
D ccrud_08165 arabinofuranosyl transferase K16647 aftC; arabinofuranan 3-O-arabinosyltransferase [EC:2.4.2.47]
D ccrud_12985 hypothetical protein K16648 aftD; arabinofuranan 3-O-arabinosyltransferase [EC:2.4.2.-]
D ccrud_02915 hypothetical protein K22902 K22902; D-galactosaminyltransferase
D ccrud_01055 glycosyl transferase K16649 glft1; rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,3/1,4-galactofuranosyltransferase [EC:2.4.1.287]
D ccrud_13120 glycosyl transferase K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
D ccrud_03610 alpha-D-GlcNAc-diphosphoryl polyprenol, alpha-3-L-rhamnosyl transferase K16870 wbbL; N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase [EC:2.4.1.289]
D ccrud_11845 trehalose-6-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D ccrud_05370 glucosyl-3-phosphoglycerate synthase K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:ccjz01005]
D ccrud_05805 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ccjz01011]
D ccrud_11500 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D ccrud_02095 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D ccrud_09445 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D ccrud_09460 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D ccrud_09475 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D ccrud_06445 D-alanine--D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D ccrud_03000 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D ccrud_11270 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D ccrud_09465 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D ccrud_09450 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D ccrud_07375 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ccrud_13130 phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D ccrud_13895 murein biosynthesis protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D ccrud_09480 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D ccrud_00160 penicillin-binding protein K05364 pbpA; penicillin-binding protein A
D ccrud_03380 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D ccrud_12160 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D ccrud_09590 hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D ccrud_07485 hydrolase K21473 ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-]
D ccrud_13215 class C sortase K07284 srtA; sortase A [EC:3.4.22.70]
D ccrud_13230 class C sortase K07284 srtA; sortase A [EC:3.4.22.70]
D ccrud_13380 class E sortase K07284 srtA; sortase A [EC:3.4.22.70]
D ccrud_07890 ABC transporter substrate-binding protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D ccrud_13915 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:ccjz01004]
D ccrud_04120 type I polyketide synthase K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-]
D ccrud_11215 3-oxoacyl-ACP synthase K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-]
D ccrud_03540 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ccrud_12890 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ccrud_00430 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D ccrud_08040 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D ccrud_13065 polyketide synthase K12437 pks13; polyketide synthase 13
D ccrud_13795 acetoacetate-CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D ccrud_02105 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D ccrud_10135 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D ccrud_13070 acyl-CoA synthase K12428 fadD32; fatty acid CoA ligase FadD32
D ccrud_09575 acyl-phosphate glycerol 3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:ccjz01006]
D ccrud_09520 geranylgeranyl pyrophosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D ccrud_03170 geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D ccrud_04875 isoprenyl transferase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D ccrud_10070 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D ccrud_10810 phytoene synthase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D ccrud_08395 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D ccrud_02350 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D ccrud_07605 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D ccrud_13110 phosphoribose diphosphate--decaprenyl-phosphate phosphoribosyltransferase K14136 K14136; decaprenyl-phosphate phosphoribosyltransferase [EC:2.4.2.45]
C 01007 Amino acid related enzymes [BR:ccjz01007]
D ccrud_01245 tRNA glutamyl-Q synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ccrud_06180 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ccrud_06740 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D ccrud_03365 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D ccrud_11910 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D ccrud_05695 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D ccrud_04410 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D ccrud_09405 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D ccrud_10565 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D ccrud_13625 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D ccrud_12100 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D ccrud_07915 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D ccrud_07965 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D ccrud_10045 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D ccrud_13170 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D ccrud_08665 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D ccrud_08080 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D ccrud_07900 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D ccrud_06655 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D ccrud_06660 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D ccrud_12830 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D ccrud_04010 aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D ccrud_01160 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ccrud_09190 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D ccrud_10195 aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D ccrud_06695 argD; acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D ccrud_02275 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D ccrud_09700 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D ccrud_04080 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450 [BR:ccjz00199]
C 00194 Photosynthesis proteins [BR:ccjz00194]
D ccrud_05850 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D ccrud_05845 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D ccrud_05840 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D ccrud_05835 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D ccrud_05830 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D ccrud_05825 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D ccrud_05820 ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D ccrud_05815 ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:ccjz03000]
D ccrud_01710 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D ccrud_08300 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D ccrud_06070 transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D ccrud_13335 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D ccrud_10295 hypothetical protein K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D ccrud_08330 D-beta-D-heptose 1-phosphate adenosyltransferase K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D ccrud_06015 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ccrud_11145 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ccrud_13175 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D ccrud_10240 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D ccrud_11015 hypothetical protein K03710 K03710; GntR family transcriptional regulator
D ccrud_13285 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D ccrud_03840 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D ccrud_09215 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D ccrud_07500 TetR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D ccrud_11510 helix-turn-helix transcriptional regulator K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism
D ccrud_10720 LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D ccrud_12220 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D ccrud_12590 MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D ccrud_10055 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D ccrud_13805 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D ccrud_10640 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D ccrud_01500 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D ccrud_05665 Crp/Fnr family transcriptional regulator K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
D ccrud_02330 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D ccrud_07325 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D ccrud_01970 Cro/Cl family transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D ccrud_03405 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D ccrud_08480 transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator
D ccrud_10595 PadR family transcriptional regulator K26740 vanR; PadR family transcriptional regulator, regulator of vanillate utilization
D ccrud_08275 toxin repressor K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D ccrud_03235 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D ccrud_03495 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D ccrud_14150 hypothetical protein K27097 espR; ESX-1-secreted protein regulator
D ccrud_06185 transcriptional regulator K07727 K07727; putative transcriptional regulator
D ccrud_00560 aldehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D ccrud_12195 hypothetical protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D ccrud_12815 transcription antiterminator BglG K03488 licT; beta-glucoside operon transcriptional antiterminator
D ccrud_03055 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D ccrud_03620 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D ccrud_03740 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D ccrud_01450 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D ccrud_02070 CopY family transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D ccrud_13925 cell division protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ccrud_11990 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D ccrud_06705 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D ccrud_10110 heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D ccrud_07795 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D ccrud_13875 hypothetical protein K07735 algH; putative transcriptional regulator
D ccrud_08315 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D ccrud_09495 cell division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:ccjz03021]
D ccrud_04020 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D ccrud_02900 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D ccrud_02550 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D ccrud_02555 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D ccrud_07755 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D ccrud_08230 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D ccrud_08270 RNA polymerase subunit sigma-70 K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D ccrud_03735 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D ccrud_03060 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D ccrud_01355 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D ccrud_05405 RNA polymerase sigma factor SigE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D ccrud_13900 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D ccrud_08630 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D ccrud_07815 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D ccrud_02495 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D ccrud_04850 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D ccrud_05785 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:ccjz03019]
D ccrud_10515 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D ccrud_09070 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D ccrud_08545 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D ccrud_09995 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D ccrud_11100 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D ccrud_05565 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D ccrud_04415 recombinase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D ccrud_04810 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ccrud_08570 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D ccrud_05785 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D ccrud_12605 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D ccrud_03050 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ccrud_12255 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ccrud_04535 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D ccrud_12245 polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D ccrud_13880 CCA tRNA nucleotidyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D ccrud_04575 regulator of ribonuclease activity K02553 rraA; regulator of ribonuclease activity A
D ccrud_07685 RNase adaptor protein RapZ K06958 rapZ; RNase adapter protein RapZ
D ccrud_07225 DEAD/DEAH box helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D ccrud_08310 ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D ccrud_00740 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:ccjz03011]
D ccrud_06540 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D ccrud_08820 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D ccrud_02635 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D ccrud_02895 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D ccrud_02770 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D ccrud_13495 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D ccrud_02580 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D ccrud_02755 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D ccrud_02965 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D ccrud_02600 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D ccrud_02890 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D ccrud_02575 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D ccrud_02885 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D ccrud_04280 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D ccrud_08575 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D ccrud_08955 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D ccrud_02650 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D ccrud_04275 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D ccrud_02625 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D ccrud_10410 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D ccrud_02505 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D ccrud_02620 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D ccrud_02605 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D ccrud_02610 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D ccrud_02670 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D ccrud_02760 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D ccrud_13485 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D ccrud_02525 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D ccrud_02500 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D ccrud_02530 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D ccrud_02960 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D ccrud_02660 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D ccrud_02780 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D ccrud_02640 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D ccrud_02905 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D ccrud_02765 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D ccrud_08865 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D ccrud_06620 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D ccrud_10510 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D ccrud_02630 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D ccrud_02615 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D ccrud_02665 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D ccrud_10505 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D ccrud_04290 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D ccrud_02645 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D ccrud_02775 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D ccrud_04305 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D ccrud_04310 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D ccrud_04285 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D ccrud_13950 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D ccrud_06615 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D ccrud_11370 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D ccrud_04650 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D ccrud_00385 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_11485 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_13430 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_04005 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_06755 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_11445 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_11455 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_03995 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_13440 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_00375 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_06745 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_11495 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_06750 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_11450 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_00380 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_04000 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_11490 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_13435 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:ccjz03009]
D ccrud_09070 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D ccrud_11100 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D ccrud_10080 GTPase Era K03595 era; GTPase
D ccrud_10480 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D ccrud_08630 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D ccrud_07815 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D ccrud_02495 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D ccrud_04500 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D ccrud_07725 MFS transporter K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D ccrud_06480 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D ccrud_10100 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D ccrud_13935 16S rRNA (guanine(527)-N(7))-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D ccrud_09490 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D ccrud_04400 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D ccrud_06770 16S/23S rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D ccrud_05380 SAM-dependent methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D ccrud_11905 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D ccrud_08790 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D ccrud_13415 23S rRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D ccrud_06835 MFS transporter K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D ccrud_01645 23S rRNA pseudouridine(955/2504/2580) synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D ccrud_09355 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D ccrud_03025 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D ccrud_08935 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D ccrud_10515 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D ccrud_07895 Holliday junction DNA helicase RuvA K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D ccrud_05565 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D ccrud_03715 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D ccrud_06845 ribosome biogenesis GTPase Der K03977 engA; GTPase
D ccrud_08375 GTPase HflX K03665 hflX; GTPase
D ccrud_05800 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D ccrud_07990 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D ccrud_08615 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D ccrud_08635 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D ccrud_00770 RNA-binding protein K14761 rlbA; ribosome-associated protein
D ccrud_10450 ribosome silencing factor K09710 ybeB; ribosome-associated protein
D ccrud_10090 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D ccrud_05040 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D ccrud_09075 DNA-binding protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:ccjz03016]
D ccrud_09995 ribonuclease K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D ccrud_13560 RNA-splicing ligase RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D ccrud_01245 tRNA glutamyl-Q synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ccrud_06180 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ccrud_08665 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D ccrud_09405 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D ccrud_13625 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D ccrud_04410 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D ccrud_05695 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D ccrud_12100 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D ccrud_07915 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D ccrud_07900 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D ccrud_10045 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D ccrud_08080 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D ccrud_13170 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D ccrud_11910 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D ccrud_10565 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D ccrud_07965 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D ccrud_06655 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D ccrud_06660 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D ccrud_06740 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D ccrud_03365 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D ccrud_08265 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D ccrud_07270 SAM-dependent methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D ccrud_13035 tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D ccrud_02910 tRNA pseudouridine(38,39,40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D ccrud_08590 tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D ccrud_05915 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ccrud_05150 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ccrud_05800 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D ccrud_08395 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D ccrud_04165 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D ccrud_13945 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D ccrud_09850 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D ccrud_11260 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D ccrud_08185 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D ccrud_10315 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D ccrud_01955 aminoacyl-tRNA deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D ccrud_01200 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D ccrud_08420 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D ccrud_08925 tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D ccrud_03255 rRNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D ccrud_06650 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D ccrud_13415 23S rRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D ccrud_05955 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D ccrud_11635 aminomethyltransferase K06980 ygfZ; tRNA-modifying protein YgfZ
D ccrud_01225 tRNA-guanine(34) transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D ccrud_12155 tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D ccrud_03020 tRNA N6-adenosine(37)-N6-threonylcarbamoyltransferase complex dimerization subunit TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D ccrud_03030 tRNA N6-adenosine(37)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D ccrud_03005 tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D ccrud_08570 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:ccjz03012]
D ccrud_08620 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D ccrud_06610 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D ccrud_08815 translation elongation factor Ts K02357 tsf; elongation factor Ts
D ccrud_02590 translation elongation factor Tu K02358 tuf; elongation factor Tu
D ccrud_02585 translation elongation factor G K02355 fusA; elongation factor G
D ccrud_05790 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D ccrud_08805 ribosome recycling factor K02838 frr; ribosome recycling factor
D ccrud_05795 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D ccrud_04625 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D ccrud_04645 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D ccrud_02880 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D ccrud_07820 elongation factor P K02356 efp; elongation factor P
D ccrud_03885 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D ccrud_04595 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:ccjz03110]
D ccrud_06330 hypothetical protein K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D ccrud_12535 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D ccrud_12045 NDP-hexose 4-ketoreductase K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D ccrud_10620 ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D ccrud_00545 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
D ccrud_12605 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D ccrud_03050 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ccrud_12255 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ccrud_12595 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D ccrud_10105 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D ccrud_12600 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D ccrud_09280 RNA-binding protein S4 K04762 hslR; ribosome-associated heat shock protein Hsp15
D ccrud_03045 co-chaperone GroES K04078 groES; chaperonin GroES
D ccrud_14630 peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D ccrud_12145 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D ccrud_05815 ATP synthase F0 subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D ccrud_08090 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D ccrud_02930 type VII secretion-associated serine protease mycosin K14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-]
D ccrud_00135 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D ccrud_07975 isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D ccrud_13460 thioredoxin K03671 TXN; thioredoxin
D ccrud_13910 thioredoxin K03671 TXN; thioredoxin
D ccrud_05875 co-chaperone YbbN K05838 ybbN; putative thioredoxin
C 04131 Membrane trafficking [BR:ccjz04131]
D ccrud_10535 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D ccrud_03270 flotillin K07192 FLOT; flotillin
D ccrud_04635 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ccrud_07670 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ccrud_02115 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D ccrud_13260 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ccrud_09130 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ccrud_00545 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
D ccrud_11765 hypothetical protein K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system [BR:ccjz04121]
D ccrud_07255 ubiquitin-like protein Pup K13570 pup; prokaryotic ubiquitin-like protein Pup
C 03051 Proteasome [BR:ccjz03051]
D ccrud_00545 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
D ccrud_07265 proteasome ATPase K13527 mpa; proteasome-associated ATPase
D ccrud_07250 Pup--protein ligase K13571 pafA; proteasome accessory factor A [EC:6.3.1.19]
D ccrud_07245 WYL domain-containing protein K13572 pafB; proteasome accessory factor B
D ccrud_07240 WYL domain-containing protein K13573 pafC; proteasome accessory factor C
D ccrud_07260 proteasome accessory factor PafA2 K20814 dop; Pup amidohydrolase [EC:3.5.1.119]
C 03032 DNA replication proteins [BR:ccjz03032]
D ccrud_00005 chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein
D ccrud_13480 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D ccrud_09990 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D ccrud_13490 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_14045 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_11025 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_09315 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ccrud_00015 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ccrud_13985 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ccrud_10425 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ccrud_01610 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ccrud_05970 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_06160 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_01315 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_09245 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_14030 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_01275 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ccrud_09855 bifunctional RNase H/acid phosphatase K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
D ccrud_08855 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D ccrud_06530 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D ccrud_05975 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D ccrud_00065 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D ccrud_00030 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D ccrud_01595 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:ccjz03036]
D ccrud_09070 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D ccrud_03270 flotillin K07192 FLOT; flotillin
D ccrud_00005 chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein
D ccrud_06070 transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D ccrud_09005 chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D ccrud_06815 segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D ccrud_06830 SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B
D ccrud_04815 septum formation initiator K05589 ftsB; cell division protein FtsB
D ccrud_03890 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D ccrud_09480 cell division protein FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D ccrud_08505 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D ccrud_14050 hypothetical protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D ccrud_09440 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D ccrud_09455 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D ccrud_03895 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D ccrud_09435 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D ccrud_13915 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D ccrud_09420 cell division protein SepF K09772 sepF; cell division inhibitor SepF
D ccrud_06810 chromosome partitioning protein K03496 parA; chromosome partitioning protein
D ccrud_13930 chromosome partitioning protein K03496 parA; chromosome partitioning protein
D ccrud_14240 hypothetical protein K03496 parA; chromosome partitioning protein
D ccrud_14750 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D ccrud_13925 cell division protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ccrud_13935 16S rRNA (guanine(527)-N(7))-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D ccrud_08830 recombinase XerC K03733 xerC; integrase/recombinase XerC
D ccrud_13975 hypothetical protein K03733 xerC; integrase/recombinase XerC
D ccrud_06805 site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D ccrud_05420 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning
D ccrud_07675 DNA-binding protein WhiA K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:ccjz03400]
D ccrud_13570 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D ccrud_03190 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D ccrud_06460 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D ccrud_00655 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D ccrud_12030 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D ccrud_01510 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D ccrud_04020 helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D ccrud_05165 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ccrud_05550 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ccrud_12410 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ccrud_08205 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ccrud_00755 DNA methylase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
D ccrud_00760 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D ccrud_12795 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D ccrud_09065 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D ccrud_13555 DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D ccrud_04175 endonuclease K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D ccrud_03335 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D ccrud_12375 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D ccrud_05975 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D ccrud_06530 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D ccrud_06600 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D ccrud_06565 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D ccrud_07690 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D ccrud_03780 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ccrud_03795 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ccrud_04220 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ccrud_06320 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D ccrud_02550 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D ccrud_02555 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D ccrud_02900 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D ccrud_07755 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D ccrud_04755 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D ccrud_05010 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D ccrud_05005 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D ccrud_09315 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D ccrud_00015 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ccrud_13985 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D ccrud_10425 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D ccrud_01610 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D ccrud_05970 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_06160 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_01315 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_09245 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_14030 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D ccrud_01275 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D ccrud_13490 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_14045 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_11025 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_08450 recombinase RecA K03553 recA; recombination protein RecA
D ccrud_08025 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D ccrud_08020 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D ccrud_08030 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D ccrud_07740 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D ccrud_14100 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
D ccrud_14105 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11
D ccrud_12010 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D ccrud_00020 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D ccrud_06470 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D ccrud_14220 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D ccrud_10075 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D ccrud_01285 recombination protein RecR K06187 recR; recombination protein RecR
D ccrud_06780 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D ccrud_00065 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D ccrud_00030 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D ccrud_01595 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D ccrud_04415 recombinase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D ccrud_09385 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D ccrud_08325 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D ccrud_08445 recombination regulator RecX K03565 recX; regulatory protein
D ccrud_11315 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D ccrud_04170 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D ccrud_06435 NTP pyrophosphohydrolase K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D ccrud_06800 ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D ccrud_11355 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D ccrud_11340 class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D ccrud_08610 exopolyphosphatase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:ccjz03029]
D ccrud_08620 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D ccrud_06610 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D ccrud_08815 translation elongation factor Ts K02357 tsf; elongation factor Ts
D ccrud_02590 translation elongation factor Tu K02358 tuf; elongation factor Tu
D ccrud_02585 translation elongation factor G K02355 fusA; elongation factor G
D ccrud_10080 GTPase Era K03595 era; GTPase
D ccrud_06740 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D ccrud_13625 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D ccrud_07915 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D ccrud_10045 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D ccrud_05695 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D ccrud_05995 aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D ccrud_06050 aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D ccrud_05990 asparaginyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D ccrud_13490 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_14045 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_11025 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D ccrud_12605 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D ccrud_12600 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D ccrud_03050 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ccrud_12255 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ccrud_03045 co-chaperone GroES K04078 groES; chaperonin GroES
D ccrud_12595 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D ccrud_10105 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D ccrud_05915 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ccrud_05150 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ccrud_05420 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning
D ccrud_07605 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D ccrud_07595 cytochrome B K02259 COX15; heme a synthase [EC:1.17.99.9]
D ccrud_13385 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ccrud_13940 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ccrud_00545 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:ccjz02000]
D ccrud_04765 multidrug ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D ccrud_04760 multidrug ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D ccrud_05455 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D ccrud_10145 iron ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D ccrud_05525 thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D ccrud_05530 ABC transporter permease K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D ccrud_06350 hypothetical protein K18230 tylC; macrolide transport system ATP-binding/permease protein
D ccrud_09370 ABC transporter ATP-binding protein K18230 tylC; macrolide transport system ATP-binding/permease protein
D ccrud_04510 glycerophosphodiester phosphodiesterase K15738 uup; ABC transport system ATP-binding/permease protein
D ccrud_06925 hypothetical protein K02021 ABC.MR; putative ABC transport system ATP-binding protein
D ccrud_07410 ABC transporter permease K02021 ABC.MR; putative ABC transport system ATP-binding protein
D ccrud_01140 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D ccrud_01135 molybdenum ABC transporter permease K02018 modB; molybdate transport system permease protein
D ccrud_02230 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D ccrud_00905 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D ccrud_02225 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D ccrud_00900 ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D ccrud_00910 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D ccrud_02220 Fe3+/spermidine/putrescine ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D ccrud_11005 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D ccrud_10995 hypothetical protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D ccrud_11000 hypothetical protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D ccrud_10990 spermidine/putrescine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D ccrud_02310 nitrate ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D ccrud_02305 nitrate ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D ccrud_02315 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D ccrud_03585 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D ccrud_10840 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D ccrud_01150 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D ccrud_03580 ABC transporter substrate-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein
D ccrud_03570 ABC transporter permease K10237 thuF; trehalose/maltose transport system permease protein
D ccrud_03565 sugar ABC transporter permease K10238 thuG; trehalose/maltose transport system permease protein
D ccrud_06030 D-ribose ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D ccrud_06025 sugar ABC transporter permease K10440 rbsC; ribose transport system permease protein
D ccrud_06020 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D ccrud_06635 ABC transporter substrate-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D ccrud_06625 glycerol-3-phosphate ABC transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D ccrud_06630 glycerol-3-phosphate ABC transporter permease K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D ccrud_06640 sn-glycerol-3-phosphate ABC transporter ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D ccrud_10875 hypothetical protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D ccrud_10870 hypothetical protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D ccrud_10865 hypothetical protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D ccrud_00115 sugar ABC transporter substrate-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D ccrud_00120 ribose ABC transporter permease K02057 ABC.SS.P; simple sugar transport system permease protein
D ccrud_00125 ABC transporter ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D ccrud_11605 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D ccrud_11600 phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D ccrud_11595 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D ccrud_11590 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D ccrud_07080 ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D ccrud_10230 phosphate starvation-inducible protein PhoH K02044 phnD; phosphonate transport system substrate-binding protein
D ccrud_07065 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D ccrud_07070 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D ccrud_10220 phosphonate ABC transporter permease K02042 phnE; phosphonate transport system permease protein
D ccrud_07075 phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D ccrud_10225 phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D ccrud_08430 glutamate-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D ccrud_08435 glutamate ABC transporter permease K10006 gluC; glutamate transport system permease protein
D ccrud_08440 glutamate ABC transporter permease K10007 gluD; glutamate transport system permease protein
D ccrud_08425 glutamate ABC transporter ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D ccrud_03220 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D ccrud_12730 metal ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D ccrud_03210 methionine ABC transporter ATP-binding protein K02072 metI; D-methionine transport system permease protein
D ccrud_12720 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein
D ccrud_03215 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D ccrud_12725 ABC transporter K02071 metN; D-methionine transport system ATP-binding protein
D ccrud_04600 urea ABC transporter substrate-binding protein K11959 urtA; urea transport system substrate-binding protein
D ccrud_04605 urea ABC transporter permease subunit UrtB K11960 urtB; urea transport system permease protein
D ccrud_04610 urea ABC transporter permease subunit UrtC K11961 urtC; urea transport system permease protein
D ccrud_04615 urea ABC transporter ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein
D ccrud_04620 urea ABC transporter ATP-binding subunit UrtE K11963 urtE; urea transport system ATP-binding protein
D ccrud_09910 sugar ABC transporter substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D ccrud_09905 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D ccrud_09900 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D ccrud_06510 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D ccrud_12420 ABC transporter K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D ccrud_06505 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D ccrud_06500 ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D ccrud_08645 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D ccrud_10570 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D ccrud_08650 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D ccrud_08655 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D ccrud_08660 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D ccrud_11955 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ccrud_08000 peptide ABC transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ccrud_12935 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ccrud_12940 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ccrud_10275 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ccrud_10910 ABC transporter substrate binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D ccrud_11960 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D ccrud_12945 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D ccrud_10905 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D ccrud_12950 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D ccrud_10285 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D ccrud_10900 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D ccrud_11965 ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ccrud_12955 glutathione ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ccrud_10290 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ccrud_10895 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D ccrud_11970 ABC transporter K02032 ddpF; peptide/nickel transport system ATP-binding protein
D ccrud_03325 ABC transporter substrate-binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D ccrud_03320 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein
D ccrud_03315 ABC transporter permease K23187 fepG; iron-siderophore transport system permease protein
D ccrud_03310 iron dicitrate ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D ccrud_03975 iron ABC transporter substrate-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D ccrud_03985 iron ABC transporter permease K25283 yclO; iron-siderophore transport system permease protein
D ccrud_03980 iron ABC transporter permease K25284 yclN; iron-siderophore transport system permease protein
D ccrud_03990 iron ABC transporter ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D ccrud_07875 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D ccrud_07870 ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein
D ccrud_05890 iron ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D ccrud_10960 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D ccrud_07880 histidinol phosphatase K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D ccrud_03350 ABC transporter substrate-binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D ccrud_09235 ABC transporter substrate-binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D ccrud_09230 ABC transporter permease K25027 btuC; cobalamin transport system permease protein
D ccrud_03360 ABC transporter permease K25027 btuC; cobalamin transport system permease protein
D ccrud_09225 cobalamin/Fe3+-siderophores ABC transporter ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D ccrud_03355 cobalamin/Fe3+-siderophore ABC transporter ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D ccrud_08460 biotin biosynthesis protein BioY K03523 bioY; biotin transport system substrate-specific component
D ccrud_08470 cobalt ABC transporter permease K16783 bioN; biotin transport system permease protein
D ccrud_08465 cobalt ABC transporter ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D ccrud_12750 glycosyl transferase family 9 K16923 qrtT; energy-coupling factor transport system substrate-specific component
D ccrud_02725 ABC transporter permease K16927 cbrT; energy-coupling factor transport system substrate-specific component
D ccrud_02735 cobalt ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein
D ccrud_05210 ABC transporter K16785 ecfT; energy-coupling factor transport system permease protein
D ccrud_12745 ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein
D ccrud_02730 cobalt ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D ccrud_05205 ABC transporter ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D ccrud_05200 hypothetical protein K16925 ykoE; energy-coupling factor transport system permease protein
D ccrud_11865 ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D ccrud_11875 helicase K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D ccrud_11870 ABC transporter ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D ccrud_08965 ABC transporter permease K11051 cylB; multidrug/hemolysin transport system permease protein
D ccrud_08970 multidrug ABC transporter ATP-binding protein K11050 cylA; multidrug/hemolysin transport system ATP-binding protein
D ccrud_01070 sugar ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D ccrud_01065 ABC transporter ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D ccrud_08750 ABC transporter permease K09813 hrtB; hemin transport system permease protein
D ccrud_08755 ABC transporter ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-]
D ccrud_13730 ABC transporter permease K25149 narB; polyether ionophore transport system permease protein
D ccrud_13725 multidrug ABC transporter ATP-binding protein K25150 narA; polyether ionophore transport system ATP-binding protein
D ccrud_03895 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D ccrud_03890 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D ccrud_04690 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D ccrud_07055 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D ccrud_07590 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D ccrud_12400 multidrug ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D ccrud_08780 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D ccrud_06890 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ccrud_04685 multidrug ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ccrud_07050 multidrug ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ccrud_07585 spermidine/putrescine ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ccrud_12405 ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ccrud_08785 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D ccrud_04225 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D ccrud_02135 peptide ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D ccrud_11435 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D ccrud_03205 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ccrud_04230 macrolide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ccrud_11440 peptide ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D ccrud_07560 Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D ccrud_13745 hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D ccrud_01180 carboxylate transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D ccrud_00960 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D ccrud_08135 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D ccrud_12390 sodium:phosphate symporter K14683 SLC34A; solute carrier family 34 (sodium-dependent phosphate cotransporter)
D ccrud_08605 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D ccrud_00930 MFS transporter K06609 iolT; MFS transporter, SP family, major inositol transporter
D ccrud_00415 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D ccrud_13820 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D ccrud_13295 MFS transporter K08172 shiA; MFS transporter, MHS family, shikimate and dehydroshikimate transport protein
D ccrud_10725 MFS transporter K05548 benK; MFS transporter, AAHS family, benzoate transport protein
D ccrud_10610 MFS transporter K26744 vanK; MFS transporter, AAHS family, vanillate permease
D ccrud_13800 MFS transporter K26744 vanK; MFS transporter, AAHS family, vanillate permease
D ccrud_13655 MFS transporter K26749 genK; MFS transporter, AAHS family, 2,5-dihydroxybenzoate transporter
D ccrud_04195 cyanate permease K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D ccrud_04375 cyanate permease K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D ccrud_05740 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D ccrud_12385 Bcr/CflA family drug resistance efflux transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D ccrud_03330 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D ccrud_04995 arabinose transporter permease K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D ccrud_11755 hypothetical protein K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D ccrud_12075 multidrug MFS transporter K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D ccrud_12090 MFS transporter permease K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D ccrud_11200 MFS transporter permease K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D ccrud_12525 multidrug transporter K18833 cmr; MFS transporter, DHA3 family, multidrug efflux protein
D ccrud_13340 hypothetical protein K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D ccrud_11765 hypothetical protein K06902 UMF1; MFS transporter, UMF1 family
D ccrud_13470 hypothetical protein K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D ccrud_08340 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D ccrud_08360 serine kinase K02784 ptsH; phosphocarrier protein HPr
D ccrud_11915 PTS beta-glucoside transporter subunit EIIBCA K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D ccrud_12205 PTS beta-glucoside transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D ccrud_12825 PTS beta-glucoside transporter subunit EIIBCA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D ccrud_06545 PTS beta-glucoside transporter subunit EIIBCA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D ccrud_08355 PTS lactose transporter subunit IIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D ccrud_10015 PTS mannose transporter subunit IIA K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D ccrud_13720 PTS sugar transporter K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D ccrud_13715 PTS ascorbate transporter subunit IIC K03475 ulaA; ascorbate PTS system EIIC component
D ccrud_03785 Ion channel protein K10716 kch; voltage-gated potassium channel
D ccrud_07645 ammonia channel protein K03320 amt; ammonium transporter, Amt family
D ccrud_08990 ammonium transporter K03320 amt; ammonium transporter, Amt family
D ccrud_06725 magnesium chelatase K07114 yfbK; Ca-activated chloride channel homolog
D ccrud_04340 mechanosensitive ion channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D ccrud_06100 hypothetical protein K22044 ybiO; moderate conductance mechanosensitive channel
D ccrud_01175 magnesium transporter K06213 mgtE; magnesium transporter
D ccrud_00310 magnesium transporter K03284 corA; magnesium transporter
D ccrud_11410 fluoride ion transporter CrcB K06199 crcB; fluoride exporter
D ccrud_07005 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ccrud_05755 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ccrud_07010 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ccrud_05760 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ccrud_10085 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ccrud_11160 glucuronide carrier protein K16139 uidB; glucuronide carrier protein
D ccrud_02445 D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D ccrud_05345 amino acid transporter K16237 aroP; aromatic amino acid permease
D ccrud_04780 lysine transporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D ccrud_06120 cobalt-zinc-cadmium resistance protein K16264 czcD; cobalt-zinc-cadmium efflux system protein
D ccrud_06935 zinc transporter ZupT K07238 TC.ZIP; zinc transporter, ZIP family
D ccrud_13045 RND transporter K20470 mmpL3; trehalose monomycolate/heme transporter
D ccrud_09390 multidrug DMT transporter permease K11939 rhtA; inner membrane transporter RhtA
D ccrud_09320 protein rarD K05786 rarD; chloramphenicol-sensitive protein RarD
D ccrud_05170 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D ccrud_13090 gluconate permease K16321 gntP; high-affinity gluconate transporter
D ccrud_13255 permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D ccrud_11125 high-affinity choline transporter BetT K02168 betT; choline/glycine/proline betaine transport protein
D ccrud_05220 calcium:proton antiporter K07300 chaA; Ca2+:H+ antiporter
D ccrud_05590 sodium/proline symporter K11928 putP; sodium/proline symporter
D ccrud_04105 cation acetate symporter K14393 actP; cation/acetate symporter
D ccrud_12540 sodium:glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D ccrud_06940 sodium:proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D ccrud_10485 uracil-xanthine permease K24206 uacT; uric acid transporter
D ccrud_04060 MFS transporter K06901 pbuG; adenine/guanine/hypoxanthine permease
D ccrud_09845 benzoate transporter K05782 benE; benzoate membrane transport protein
D ccrud_10730 benzoate transporter K05782 benE; benzoate membrane transport protein
D ccrud_00320 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D ccrud_10970 chromate transporter K07240 chrA; chromate transporter
D ccrud_07145 sodium-independent anion transporter K03321 TC.SULP; sulfate permease, SulP family
D ccrud_05075 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family
D ccrud_04295 MFS transporter K03321 TC.SULP; sulfate permease, SulP family
D ccrud_04970 hypothetical protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D ccrud_04450 hypothetical protein K21395 yiaO; TRAP-type transport system periplasmic protein
D ccrud_07330 arsenical-resistance protein K03325 ACR3; arsenite transporter
D ccrud_07130 arsenic resistance protein K03325 ACR3; arsenite transporter
D ccrud_01400 cation:proton antiporter K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D ccrud_12315 Na+/H+ antiporter subunit A K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D ccrud_01395 cation:proton antiporter K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D ccrud_12320 Na(+)/H(+) antiporter subunit C K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D ccrud_01390 cation:proton antiporter K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D ccrud_12325 Na+/H+ antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D ccrud_01385 cation:proton antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D ccrud_12330 Na+/H+ antiporter subunit E K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D ccrud_01380 cation:proton antiporter K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D ccrud_12335 cation:proton antiporter K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D ccrud_01375 Na+/H+ antiporter subunit G K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D ccrud_12340 cation:proton antiporter K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D ccrud_13895 murein biosynthesis protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D ccrud_10250 permease K13936 mdcF; malonate transporter and related proteins
D ccrud_10615 permease K13936 mdcF; malonate transporter and related proteins
D ccrud_03510 potassium transporter Kup K03549 kup; KUP system potassium uptake protein
D ccrud_06065 lysine transporter LysE K06895 lysE; L-lysine exporter family protein LysE/ArgO
D ccrud_10415 lysine transporter LysE K05835 rhtC; threonine efflux protein
D ccrud_00765 threonine transporter K05835 rhtC; threonine efflux protein
D ccrud_13870 branched-chain amino acid ABC transporter permease K26605 azlC; branched chain amino acid efflux pump
D ccrud_13865 branched-chain amino acid ABC transporter permease K26606 azlD; branched chain amino acid efflux pump
D ccrud_01785 transporter K07793 tctA; putative tricarboxylic transport membrane protein
D ccrud_08520 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein
D ccrud_12685 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein
D ccrud_08525 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein
D ccrud_12690 Tricarboxylate transport protein TctB K07794 tctB; putative tricarboxylic transport membrane protein
D ccrud_08530 tricarboxylic transporter K07795 tctC; putative tricarboxylic transport membrane protein
D ccrud_12695 tricarboxylic transporter K07795 tctC; putative tricarboxylic transport membrane protein
D ccrud_01230 hypothetical protein K09125 yhhQ; queuosine precursor transporter
D ccrud_10065 rubrerythrin family protein K22736 VIT; vacuolar iron transporter family protein
D ccrud_09455 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D ccrud_07125 hypothetical protein K23242 mntP; manganese efflux pump family protein
D ccrud_02290 cytochrome C biogenesis protein ResC K06196 ccdA; cytochrome c-type biogenesis protein
D ccrud_05735 nitrate reductase subunit alpha K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D ccrud_05730 nitrate reductase subunit beta K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D ccrud_05720 respiratory nitrate reductase subunit gamma K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D ccrud_01825 chromosome partitioning protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D ccrud_00325 hypothetical protein K03811 pnuC; nicotinamide mononucleotide transporter
D ccrud_13050 hypothetical protein K20468 K20468; putative heme transporter
C 02044 Secretion system [BR:ccjz02044]
D ccrud_07860 signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D ccrud_01550 ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D ccrud_01555 hypothetical protein K12510 tadB; tight adherence protein B
D ccrud_09415 hypothetical protein K02221 yggT; YggT family protein
D ccrud_10435 transporter K02237 comEA; competence protein ComEA
D ccrud_02940 type VII secretion protein EccC K27086 eccC; ESX secretion system protein EccC
D ccrud_02935 type VII secretion integral membrane protein EccD K27087 eccD; ESX secretion system protein EccD
D ccrud_02930 type VII secretion-associated serine protease mycosin K14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-]
D ccrud_02950 hypothetical protein K14956 esx; ESAT-6 family protein
D ccrud_02955 secretion protein K14956 esx; ESAT-6 family protein
D ccrud_03695 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ccrud_06960 accessory Sec system translocase SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D ccrud_08010 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D ccrud_02490 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D ccrud_08005 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D ccrud_07650 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D ccrud_02830 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D ccrud_08975 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D ccrud_08995 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D ccrud_08015 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D ccrud_13385 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ccrud_13940 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D ccrud_07235 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D ccrud_13760 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D ccrud_05415 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D ccrud_07230 twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:ccjz02042]
D ccrud_07005 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ccrud_05755 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ccrud_07010 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ccrud_05760 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ccrud_10085 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D ccrud_11665 hypothetical protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:ccjz02022]
D ccrud_02120 two-component sensor histidine kinase K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D ccrud_02125 DNA-binding response regulator K07776 regX3; two-component system, OmpR family, response regulator RegX3
D ccrud_04320 two-component sensor histidine kinase K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D ccrud_03675 two-component sensor histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D ccrud_03670 DNA-binding response regulator K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D ccrud_11735 two-component sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D ccrud_01410 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D ccrud_11740 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D ccrud_11995 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D ccrud_04695 histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D ccrud_04700 DNA-binding response regulator K07693 desR; two-component system, NarL family, response regulator DesR
D ccrud_00345 histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D ccrud_00350 two-component system response regulator K02475 K02475; two-component system, CitB family, response regulator
D ccrud_12915 PAS domain-containing sensor histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:ccjz02035]
D ccrud_07860 signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D ccrud_01550 ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:ccjz04812]
D ccrud_09435 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D ccrud_06810 chromosome partitioning protein K03496 parA; chromosome partitioning protein
D ccrud_13930 chromosome partitioning protein K03496 parA; chromosome partitioning protein
D ccrud_14240 hypothetical protein K03496 parA; chromosome partitioning protein
D ccrud_14750 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D ccrud_13925 cell division protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:ccjz04147]
D ccrud_00545 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
D ccrud_04810 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D ccrud_04635 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ccrud_07670 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D ccrud_07665 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D ccrud_13260 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ccrud_09130 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D ccrud_00135 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D ccrud_03270 flotillin K07192 FLOT; flotillin
D ccrud_03050 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ccrud_12255 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D ccrud_12605 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D ccrud_04200 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D ccrud_03075 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D ccrud_03080 inosine 5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D ccrud_02590 translation elongation factor Tu K02358 tuf; elongation factor Tu
D ccrud_13265 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D ccrud_13745 hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D ccrud_02105 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D ccrud_10135 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D ccrud_12390 sodium:phosphate symporter K14683 SLC34A; solute carrier family 34 (sodium-dependent phosphate cotransporter)
D ccrud_05630 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_10645 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D ccrud_03660 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D ccrud_02835 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D ccrud_07995 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D ccrud_06715 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D ccrud_06710 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D ccrud_00480 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2]
D ccrud_09830 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D ccrud_05880 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D ccrud_13155 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D ccrud_09755 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ccrud_09810 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D ccrud_02245 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D ccrud_02415 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D ccrud_11040 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D ccrud_06135 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D ccrud_04255 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D ccrud_01945 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D ccrud_05910 electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit
D ccrud_07620 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D ccrud_07660 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D ccrud_02115 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D ccrud_03180 lipocalin K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:ccjz02048]
D ccrud_06310 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D ccrud_06305 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D ccrud_06300 type I restriction-modification system subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D ccrud_01995 restriction endonuclease K07448 mrr; restriction system protein
D ccrud_02005 hypothetical protein K06218 relE; mRNA interferase RelE/StbE
D ccrud_05925 HipA-like protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D ccrud_03965 hypothetical protein K07341 doc; death on curing protein
D ccrud_07285 addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D ccrud_07345 addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D ccrud_13630 addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D ccrud_09435 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D ccrud_01245 tRNA glutamyl-Q synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ccrud_06180 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D ccrud_05915 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D ccrud_05150 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:ccjz01504]
D ccrud_14540 AAC(3) family aminoglycoside 3-N-acetyltransferase K19276 aac3-IV; aminoglycoside 3-N-acetyltransferase IV [EC:2.3.1.81]
D ccrud_14555 APH(3') family aminoglycoside O-phosphotransferase K19272 aph3-I; aminoglycoside 3'-phosphotransferase I [EC:2.7.1.95]
D ccrud_14575 APH(3'') family aminoglycoside O-phosphotransferase K10673 strA; streptomycin 3"-kinase [EC:2.7.1.87]
D ccrud_14660 APH(3'') family aminoglycoside O-phosphotransferase K10673 strA; streptomycin 3"-kinase [EC:2.7.1.87]
D ccrud_14720 APH(3'') family aminoglycoside O-phosphotransferase K10673 strA; streptomycin 3"-kinase [EC:2.7.1.87]
D ccrud_14530 hypothetical protein K18817 hph; hygromycin-B 4-O-kinase [EC:2.7.1.163]
D ccrud_14580 aminoglycoside O-phosphotransferase APH(6)-Id K04343 strB; streptomycin 6-kinase [EC:2.7.1.72]
D ccrud_14665 aminoglycoside O-phosphotransferase APH(6)-Id K04343 strB; streptomycin 6-kinase [EC:2.7.1.72]
D ccrud_14725 aminoglycoside O-phosphotransferase APH(6)-Id K04343 strB; streptomycin 6-kinase [EC:2.7.1.72]
D ccrud_06350 hypothetical protein K18230 tylC; macrolide transport system ATP-binding/permease protein
D ccrud_09370 ABC transporter ATP-binding protein K18230 tylC; macrolide transport system ATP-binding/permease protein
D ccrud_12525 multidrug transporter K18833 cmr; MFS transporter, DHA3 family, multidrug efflux protein
D ccrud_14620 dihydropteroate synthase K18824 sul2; dihydropteroate synthase type 2 [EC:2.5.1.15]
D ccrud_11755 hypothetical protein K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ccjz00537]
D ccrud_11040 alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:ccjz03100]
D ccrud_00100 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ccrud_00080 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ccrud_11395 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ccrud_00110 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D ccrud_05685 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ccrud_01170 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ccrud_11035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ccrud_01185 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ccrud_04140 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D ccrud_09970 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D ccrud_09975 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D ccrud_11535 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D ccrud_11550 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D ccrud_08110 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D ccrud_06200 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D ccrud_06210 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D ccrud_06205 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ccrud_11555 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ccrud_06220 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ccrud_06215 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D ccrud_10760 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ccrud_08100 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ccrud_12850 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ccrud_08115 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ccrud_08125 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D ccrud_11045 tRNA-His K14226 tRNA-His; tRNA His
D ccrud_00105 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ccrud_00075 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D ccrud_07415 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ccrud_11240 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ccrud_06525 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ccrud_00185 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ccrud_04830 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ccrud_07420 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D ccrud_11115 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D ccrud_11120 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D ccrud_11570 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D ccrud_03855 tRNA-Met K14230 tRNA-Met; tRNA Met
D ccrud_09960 tRNA-Met K14230 tRNA-Met; tRNA Met
D ccrud_02480 tRNA-Met K14230 tRNA-Met; tRNA Met
D ccrud_03960 tRNA-Met K14230 tRNA-Met; tRNA Met
D ccrud_11530 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D ccrud_10750 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D ccrud_01430 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D ccrud_06945 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D ccrud_01165 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D ccrud_01090 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D ccrud_01255 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D ccrud_01210 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D ccrud_01615 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D ccrud_02470 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D ccrud_11830 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D ccrud_02475 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D ccrud_02485 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D ccrud_02465 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D ccrud_08105 tRNA-Val K14237 tRNA-Val; tRNA Val
D ccrud_08130 tRNA-Val K14237 tRNA-Val; tRNA Val
D ccrud_08120 tRNA-Val K14237 tRNA-Val; tRNA Val
D ccrud_09885 tRNA-Val K14237 tRNA-Val; tRNA Val
D ccrud_11455 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_03995 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_13440 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_00375 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_06745 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_11495 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D ccrud_06750 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_11450 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_00380 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_04000 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_11490 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_13435 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D ccrud_00385 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_11485 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_13430 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_04005 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_06755 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_11445 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D ccrud_01260 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA
D ccrud_09850 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA
D ccrud_03910 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D ccrud_01655 S-(hydroxymethyl)mycothiol dehydrogenase K00153 E1.1.1.306; S-(hydroxymethyl)mycothiol dehydrogenase [EC:1.1.1.306]
D ccrud_10815 histidinol dehydrogenase K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308]
D ccrud_10880 histidinol dehydrogenase K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308]
D ccrud_01010 short-chain dehydrogenase K16652 dprE2; decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase [EC:1.1.1.333]
D ccrud_10490 2,5-diketo-D-gluconic acid reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D ccrud_06060 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D ccrud_01015 decaprenylphosphoryl-beta-D-ribose oxidase K16653 dprE1; decaprenylphospho-beta-D-ribofuranose 2-oxidase [EC:1.1.98.3]
D ccrud_02455 FAD-linked oxidoreductase K21401 menJ; menaquinone-9 beta-reductase [EC:1.3.99.38]
D ccrud_06055 diguanylate cyclase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D ccrud_12810 hypothetical protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D ccrud_03420 NAD(P)H-quinone dehydrogenase K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D ccrud_07600 NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D ccrud_13575 NADPH:quinone reductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D ccrud_13840 NADPH:quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D ccrud_08710 mycothione reductase K17883 mtr; mycothione reductase [EC:1.8.1.15]
D ccrud_13325 peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D ccrud_08170 peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D ccrud_06075 glutathione-dependent reductase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D ccrud_08085 peroxidase K15733 E1.11.1.19; dye decolorizing peroxidase [EC:1.11.1.19]
D ccrud_11185 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D ccrud_05240 lipid hydroperoxide peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D ccrud_10525 pirin K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D ccrud_12930 taurine catabolism dioxygenase K22303 atsK; alkyl sulfatase [EC:1.14.11.77]
D ccrud_12800 hemin transporter K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D ccrud_12910 acyl-CoA dehydrogenase K22027 iacA; indole-3-acetate monooxygenase [EC:1.14.13.235]
D ccrud_13535 antibiotic biosynthesis monooxygenase K21481 mhuD; heme oxygenase (mycobilin-producing) [EC:1.14.99.57]
D ccrud_11345 ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D ccrud_00210 fumarate reductase K27500 chcC1; 4-oxocyclohexanecarboxylate 2-dehydrogenase [EC:1.17.3.5]
D ccrud_12440 pyridine nucleotide-disulfide oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D ccrud_12665 pyridine nucleotide-disulfide oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D ccrud_05280 arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D ccrud_04150 glutaredoxin-like protein K18917 mrx1; mycoredoxin [EC:1.20.4.3]
D ccrud_07105 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D ccrud_00750 galactoside O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D ccrud_11610 mycothiol synthase K15520 mshD; mycothiol synthase [EC:2.3.1.189]
D ccrud_07175 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D ccrud_05935 GCN5 family acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D ccrud_12990 acyltransferase K27307 tmaT; acetyltransferase [EC:2.3.1.-]
D ccrud_04050 glutamine cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D ccrud_02110 D-inositol-3-phosphate glycosyltransferase K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]
D ccrud_11080 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate carboxylase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D ccrud_09135 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D ccrud_03140 ubiA; prenyltransferase K23155 crtEb; lycopene elongase/hydratase (flavuxanthin-forming) [EC:2.5.1.149]
D ccrud_06465 kinase K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D ccrud_09805 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D ccrud_12015 DNA integrity scanning protein DisA K07067 disA; diadenylate cyclase [EC:2.7.7.85]
D ccrud_08690 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D ccrud_07335 arsenate-mycothiol transferase K18701 arsC; arsenate-mycothiol transferase [EC:2.8.4.2]
D ccrud_05470 carboxylesterase K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D ccrud_13075 carbohydrate esterase K27360 cut6; phospholipase A/thioesterase [EC:3.1.1.-]
D ccrud_02395 thioesterase K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29]
D ccrud_10980 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D ccrud_10445 histidine phosphatase K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D ccrud_00605 phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D ccrud_04490 DNAase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D ccrud_05860 endonuclease K07503 nucS; endonuclease [EC:3.1.-.-]
D ccrud_07735 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D ccrud_12365 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D ccrud_05310 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase K15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103]
D ccrud_04860 mycothiol conjugate amidase Mca K18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115]
D ccrud_12570 amidohydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D ccrud_00795 translation initiation inhibitor K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D ccrud_03035 NAD(P)H-hydrate epimerase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D ccrud_11075 TIGR00268 family protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D ccrud_11085 TIGR00299 family protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D ccrud_11090 hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D ccrud_07370 cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase K15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13]
D ccrud_04095 acetyl-CoA carboxylase carboxyl transferase subunit alpha/beta K04104 accD3; acyl-CoA carboxylase subunit beta [EC:6.4.1.-]
D ccrud_13060 methylmalonyl-CoA carboxyltransferase K27093 accD4; long chain acyl-CoA carboxylase carboxyl transferase subunit beta 4 [EC:6.4.1.- 2.1.3.-]
D ccrud_03485 methylmalonyl-CoA carboxyltransferase K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.- 2.1.3.-]
D ccrud_03490 methylmalonyl-CoA carboxyltransferase K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.- 2.1.3.-]
D ccrud_05675 HAD family hydrolase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D ccrud_00860 protein iolH K06605 iolH; myo-inositol catabolism protein IolH
C 99982 Energy metabolism
D ccrud_02705 sufurtransferase FdhD K02379 fdhD; FdhD protein
D ccrud_02800 ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D ccrud_07550 SUF system NifU family Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D ccrud_08535 tricarballylate dehydrogenase K13796 cobZ; tricarballylate dehydrogenase
D ccrud_05905 electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit
D ccrud_13605 pyridine nucleotide-disulfide oxidoreductase K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
C 99983 Lipid metabolism
D ccrud_03480 acyl-CoA carboxylase subunit epsilon K27095 accE5; propionyl-/long chain acyl-CoA carboxylase epsilon subunit
D ccrud_11095 short-chain dehydrogenase K27306 cmrA; mycolic acid reductase
C 99984 Nucleotide metabolism
D ccrud_11360 ribonucleotide reductase assembly protein NrdI K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D ccrud_09425 YggS family pyridoxal phosphate enzyme K06997 yggS; PLP dependent protein
D ccrud_06040 amino acid acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D ccrud_04035 Resuscitation-promoting factor Rpf1 K21687 rpfA; resuscitation-promoting factor RpfA
D ccrud_04495 Resuscitation-promoting factor Rpf2 K21688 rpfB; resuscitation-promoting factor RpfB
D ccrud_01685 glycosyl transferase K22907 ppgS; polyprenyl-phospho-N-acetylgalactosaminyl synthase
C 99987 Cofactor metabolism
D ccrud_08675 magnesium chelatase K13580 K13580; magnesium chelatase subunit ChlD-like protein
D ccrud_00570 P-aminobenzoyl-glutamate transporter K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
D ccrud_11820 polyhydroxybutyrate depolymerase K03932 lpqC; polyhydroxybutyrate depolymerase
C 99999 Others
D ccrud_02365 hypothetical protein K15977 K15977; putative oxidoreductase
D ccrud_04380 hypothetical protein K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D ccrud_01585 cold-shock protein K03704 cspA; cold shock protein
D ccrud_04040 cold-shock protein K03704 cspA; cold shock protein
D ccrud_05045 cold-shock protein K03704 cspA; cold shock protein
D ccrud_08895 RNA-binding transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D ccrud_11300 ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D ccrud_10745 trigger factor K03545 tig; trigger factor
D ccrud_00505 urease accessory protein UreE K03187 ureE; urease accessory protein
D ccrud_00510 urease accessory protein UreF K03188 ureF; urease accessory protein
D ccrud_00515 urease accessory protein UreG K03189 ureG; urease accessory protein
D ccrud_00520 urease accessory protein UreD K03190 ureD; urease accessory protein
D ccrud_03900 SsrA-binding protein K03664 smpB; SsrA-binding protein
D ccrud_11365 NrdH-redoxin K06191 nrdH; glutaredoxin-like protein NrdH
D ccrud_08840 ATPase K07391 comM; magnesium chelatase family protein
D ccrud_02295 cytochrome C biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein
C 99976 Replication and repair
D ccrud_06315 hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D ccrud_08845 hypothetical protein K07460 yraN; putative endonuclease
D ccrud_07280 exodeoxyribonuclease V subunit beta K07465 K07465; putative RecB family exonuclease
D ccrud_08835 DNA protecting protein DprA K04096 smf; DNA processing protein
D ccrud_07905 AAA family ATPase K07478 ycaJ; putative ATPase
D ccrud_00880 transposase K18320 IS15; transposase, IS6 family
D ccrud_14545 transposase K18320 IS15; transposase, IS6 family
D ccrud_14560 transposase K18320 IS15; transposase, IS6 family
D ccrud_14625 transposase K18320 IS15; transposase, IS6 family
D ccrud_14525 transposase K18320 IS15; transposase, IS6 family
D ccrud_14680 transposase K18320 IS15; transposase, IS6 family
D ccrud_06895 ABC transporter permease K07483 K07483; transposase
D ccrud_00235 transposase K07483 K07483; transposase
D ccrud_12185 hypothetical protein K07483 K07483; transposase
D ccrud_14650 transposase K07483 K07483; transposase
D ccrud_14710 transposase K07483 K07483; transposase
D ccrud_06855 XRE family transcriptional regulator K07486 K07486; transposase
D ccrud_00230 integrase K07497 K07497; putative transposase
D ccrud_01900 integrase K07497 K07497; putative transposase
D ccrud_07830 integrase catalytic subunit K07497 K07497; putative transposase
D ccrud_12180 hypothetical protein K07497 K07497; putative transposase
D ccrud_14655 integrase K07497 K07497; putative transposase
D ccrud_14715 integrase K07497 K07497; putative transposase
D ccrud_13290 serine/threonine protein phosphatase K07498 K07498; putative transposase
C 99979 Viral proteins
C 99998 Others
D ccrud_08475 hypothetical protein K03969 pspA; phage shock protein A
D ccrud_01280 transcriptional regulator K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D ccrud_11480 sugar (glycoside-pentoside-Hexuronide) transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D ccrud_05560 proY; proline-specific permease ProY K03293 TC.AAT; amino acid transporter, AAT family
D ccrud_00340 citrate:proton symporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D ccrud_10300 citrate transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D ccrud_13765 MFS transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D ccrud_02405 inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D ccrud_05035 SNF family Na(+)-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D ccrud_01100 sodium:alanine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D ccrud_10200 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D ccrud_06045 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D ccrud_10325 Na+-dependent transporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D ccrud_08905 permease K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D ccrud_03010 transporter K07085 K07085; putative transport protein
D ccrud_09735 transporter K07085 K07085; putative transport protein
C 99978 Cell growth
C 99993 Cell motility
C 99995 Signaling proteins
D ccrud_03290 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D ccrud_05300 GTP-binding protein TypA K06207 typA; GTP-binding protein
D ccrud_10095 phosphate starvation-inducible protein PhoH K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D ccrud_00330 ATP-binding protein K07175 phoH2; PhoH-like ATPase
D ccrud_06155 histidine kinase K07182 K07182; CBS domain-containing protein
C 99992 Structural proteins
D ccrud_01680 hypothetical protein K09153 K09153; small membrane protein
C 99994 Others
D ccrud_11585 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D ccrud_08500 tellurium resistance protein TerC K05794 terC; tellurite resistance protein TerC
D ccrud_13140 FAD-dependent oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport
B
B 09194 Poorly characterized
C 99996 General function prediction only
D ccrud_12445 acetyltransferase K02348 elaA; ElaA protein
D ccrud_01580 DEAD/DEAH box helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D ccrud_10655 helix-turn-helix transcriptional regulator K06886 glbN; hemoglobin
D ccrud_10965 hemin receptor K06886 glbN; hemoglobin
D ccrud_01220 multidrug RND transporter K06994 K06994; putative drug exporter of the RND superfamily
D ccrud_03165 hypothetical protein K06994 K06994; putative drug exporter of the RND superfamily
D ccrud_04570 multidrug RND transporter K06994 K06994; putative drug exporter of the RND superfamily
D ccrud_00670 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D ccrud_01855 hypothetical protein K07025 K07025; putative hydrolase of the HAD superfamily
D ccrud_13275 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D ccrud_07570 Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D ccrud_07565 Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D ccrud_04705 hypothetical protein K07058 K07058; membrane protein
D ccrud_03370 inner membrane protein YhjD K07058 K07058; membrane protein
D ccrud_07180 membrane protein FxsA K07113 fxsA; UPF0716 protein FxsA
D ccrud_13370 hypothetical protein K07146 K07146; UPF0176 protein
D ccrud_13540 hypothetical protein K07146 K07146; UPF0176 protein
D ccrud_05190 glyoxalase K04750 phnB; PhnB protein
D ccrud_12675 glyoxalase K04750 phnB; PhnB protein
D ccrud_10940 hypothetical protein K03975 dedA; membrane-associated protein
D ccrud_07930 hypothetical protein K01421 yhgE; putative membrane protein
D ccrud_00580 hypothetical protein K00389 yidH; putative membrane protein
D ccrud_01790 hypothetical protein K00389 yidH; putative membrane protein
D ccrud_01155 hypothetical protein K08972 K08972; putative membrane protein
D ccrud_06520 DUF368 domain-containing protein K08974 K08974; putative membrane protein
D ccrud_03230 hypothetical protein K08981 K08981; putative membrane protein
D ccrud_13845 hypothetical protein K08987 K08987; putative membrane protein
D ccrud_06950 hypothetical protein K09858 K09858; SEC-C motif domain protein
D ccrud_05125 phosphonoacetate hydrolase K06193 phnA; protein PhnA
C 99997 Function unknown
D ccrud_13040 NYN domain-containing protein K06860 K06860; putative heme uptake system protein
D ccrud_10125 hypothetical protein K06867 K06867; uncharacterized protein
D ccrud_10420 hypothetical protein K06867 K06867; uncharacterized protein
D ccrud_00695 permease K06867 K06867; uncharacterized protein
D ccrud_10545 acetyltransferase K06975 K06975; uncharacterized protein
D ccrud_11525 acetyltransferase K06975 K06975; uncharacterized protein
D ccrud_11695 DUF2334 domain-containing protein K06986 K06986; uncharacterized protein
D ccrud_00775 glyoxalase K06996 K06996; uncharacterized protein
D ccrud_05085 glyoxalase K06996 K06996; uncharacterized protein
D ccrud_11690 nuclease K07004 K07004; uncharacterized protein
D ccrud_11385 pyridoxamine 5-phosphate oxidase K07005 K07005; uncharacterized protein
D ccrud_04655 lactoylglutathione lyase K07032 K07032; uncharacterized protein
D ccrud_01480 4-hydroxyphenyl-beta-ketoacyl-CoA hydrolase K07045 K07045; uncharacterized protein
D ccrud_13810 4-hydroxyphenyl-beta-ketoacyl-CoA hydrolase K07045 K07045; uncharacterized protein
D ccrud_07920 metalloprotease K07054 K07054; uncharacterized protein
D ccrud_05635 hypothetical protein K07068 K07068; uncharacterized protein
D ccrud_07800 TIGR01777 family protein K07071 K07071; uncharacterized protein
D ccrud_06490 permease K07090 K07090; uncharacterized protein
D ccrud_00270 hypothetical protein K07090 K07090; uncharacterized protein
D ccrud_00730 hypothetical protein K07090 K07090; uncharacterized protein
D ccrud_12635 permease K07090 K07090; uncharacterized protein
D ccrud_01435 metallophosphoesterase K07098 K07098; uncharacterized protein
D ccrud_07115 phosphoribosyltransferase K07101 K07101; uncharacterized protein
D ccrud_01730 hypothetical protein K07112 K07112; uncharacterized protein
D ccrud_00720 ammonia monooxygenase K07120 K07120; uncharacterized protein
D ccrud_01300 hypothetical protein K07148 K07148; uncharacterized protein
D ccrud_00040 hypothetical protein K07149 K07149; uncharacterized protein
D ccrud_09860 hypothetical protein K07164 K07164; uncharacterized protein
D ccrud_06975 hypothetical protein K08999 K08999; uncharacterized protein
D ccrud_04820 septum formation initiator family protein K09009 K09009; uncharacterized protein
D ccrud_01440 glutamyl-tRNA amidotransferase K09117 K09117; uncharacterized protein
D ccrud_03835 hypothetical protein K09118 K09118; uncharacterized protein
D ccrud_05290 DUF402 domain-containing protein K09146 K09146; uncharacterized protein
D ccrud_13750 hypothetical protein K09164 K09164; uncharacterized protein
D ccrud_03225 hypothetical protein K09167 K09167; uncharacterized protein
D ccrud_13835 AAA family ATPase K09384 K09384; uncharacterized protein
D ccrud_11790 hypothetical protein K09780 K09780; uncharacterized protein
D ccrud_08495 hypothetical protein K09780 K09780; uncharacterized protein
D ccrud_05250 ABC transporter K09781 K09781; uncharacterized protein
D ccrud_06735 tetraacyldisaccharide 4'-kinase K09791 K09791; uncharacterized protein
D ccrud_08670 hypothetical protein K09861 K09861; uncharacterized protein
D ccrud_05260 DUF2218 domain-containing protein K09956 K09956; uncharacterized protein
D ccrud_08625 DNA-binding protein K07742 ylxR; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 12, 2024